Rmu_co8013720.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8013720.1
OG0009943
Physical Location & Seq
Reverse (-)
116 .. 511
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8013720.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
atgtacaaaaataaagcagctgaaaaagcatatagaaatgataaatctggtcgatcggagctggataatggggaagcagaatcaagtcaaacaaaagagaaaaattgggacgatatgcctactagtggtaaaaaaaggggccgagtgaagctaaaaaagttgcccttaagtgtttgcacttttagggatcaggcaaatcctaaagaagatgtgggtgcaagaagctccccactaactgatatgaacatgggaaatccaactgctggaaacaagcctttgtttcctgcagagtcttctgctgatagtatgctgcctattgagcccacaccggtgtggaaatgccaggagttcaaggcacctgcatgtgtgaagcaaaataaagtcatgcaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.52

Weight (kDa)

9.28

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 1 cut(s) 355
AccB7I CCANNNNNTGG 1 cut(s) 263
AclWI GGATC 1 cut(s) 195
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 125, 263
AflII CTTAAG 1 cut(s) 166
AgeI ACCGGT 1 cut(s) 328
AgsI TTSAA 1 cut(s) 352
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 1 cut(s) 342
AleI CACNNNNGTG 2 cut(s) 329, 331
AluBI AGCT 4 cut(s) 20, 61, 151, 225
AluI AGCT 4 cut(s) 20, 61, 151, 225
AlwI GGATC 1 cut(s) 195
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 2 cut(s) 17, 310
AsiGI ACCGGT 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 29, 297
BciT130I CCWGG 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 285
BfrI CTTAAG 1 cut(s) 166
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 2 cut(s) 18, 311
BlsI GCNGC 2 cut(s) 19, 312
Bme1390I CCNGG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 140, 357
BmrFI CCNGG 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 263
Bse118I RCCGGY 1 cut(s) 328
BseBI CCWGG 1 cut(s) 344
BseLI CCNNNNNNNGG 2 cut(s) 125, 263
BseXI GCAGC 2 cut(s) 29, 297
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 141
BshNI GGYRCC 1 cut(s) 355
BshTI ACCGGT 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 329
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 125, 263
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 324
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 53, 187
BspANI GGCC 1 cut(s) 141
BspHI TCATGA 1 cut(s) 392
BspLI GGNNCC 2 cut(s) 140, 357
BspMAI CTGCAG 1 cut(s) 289
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 195
BspT107I GGYRCC 1 cut(s) 355
BspTI CTTAAG 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 328
BsrGI TGTACA 1 cut(s) 3
BssAI RCCGGY 1 cut(s) 328
BssMI GATC 2 cut(s) 53, 187
Bst2UI CCWGG 1 cut(s) 344
BstAFI CTTAAG 1 cut(s) 166
BstAUI TGTACA 1 cut(s) 3
BstKTI GATC 2 cut(s) 56, 190
BstMBI GATC 2 cut(s) 53, 187
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 26, 319
BstNI CCWGG 1 cut(s) 344
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 342
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 2 cut(s) 29, 297
BstV2I GAAGAC 1 cut(s) 285
BsuRI GGCC 1 cut(s) 141
BveI ACCTGC 1 cut(s) 367
CciI TCATGA 1 cut(s) 392
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 328
CviAII CATG 4 cut(s) 247, 363, 385, 393
CviJI RGCY 7 cut(s) 20, 61, 141, 151, 225, 274, 322
CviKI_1 RGCY 7 cut(s) 20, 61, 141, 151, 225, 274, 322
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 55, 189
DpnII GATC 2 cut(s) 53, 187
Eco24I GRGCYC 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 324
FaeI CATG 4 cut(s) 250, 366, 388, 396
FaiI YATR 9 cut(s) 31, 33, 116, 242, 248, 308, 364, 386, 394
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 122
FatI CATG 4 cut(s) 246, 362, 384, 392
Fnu4HI GCNGC 2 cut(s) 18, 311
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 18, 311
FspBI CTAG 1 cut(s) 123
GluI GCNGC 2 cut(s) 18, 311
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 329
Hin1II CATG 4 cut(s) 250, 366, 388, 396
HinfI GANTC 2 cut(s) 80, 290
HpaII CCGG 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 393
HpyCH4V TGCA 5 cut(s) 177, 218, 287, 362, 388
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 319
Hsp92II CATG 4 cut(s) 250, 366, 388, 396
Kzo9I GATC 2 cut(s) 53, 187
LmnI GCTCC 2 cut(s) 58, 230
LpnPI CCDG 9 cut(s) 33, 47, 176, 249, 297, 329, 342, 356, 372
Lsp1109I GCAGC 2 cut(s) 29, 297
MaeI CTAG 1 cut(s) 123
MalI GATC 2 cut(s) 55, 189
MboI GATC 2 cut(s) 53, 187
MboII GAAGA 2 cut(s) 218, 285
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 281
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 3 cut(s) 329, 331, 361
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 1 cut(s) 166
MspI CCGG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 344
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 26, 319
NdeII GATC 2 cut(s) 53, 187
NlaIII CATG 4 cut(s) 250, 366, 388, 396
NlaIV GGNNCC 2 cut(s) 140, 357
NmeAIII GCCGAG 1 cut(s) 167
NspI RCATGY 1 cut(s) 366
OliI CACNNNNGTG 2 cut(s) 329, 331
PagI TCATGA 1 cut(s) 392
PaqCI CACCTGC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 328
PkrI GCNGC 2 cut(s) 19, 312
Ple19I CGATCG 1 cut(s) 56
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 342
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 140, 357
PspPI GGNCC 1 cut(s) 139
PstI CTGCAG 1 cut(s) 289
PvuI CGATCG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 3 cut(s) 329, 331, 361
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 2 cut(s) 18, 311
Sau3AI GATC 2 cut(s) 53, 187
Sau96I GGNCC 1 cut(s) 139
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 324
SetI ASST 5 cut(s) 22, 63, 153, 227, 361
SfcI CTRYAG 1 cut(s) 285
SgrAI CRCCGGYG 1 cut(s) 328
SmiMI CAYNNNNRTG 3 cut(s) 329, 331, 361
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 1 cut(s) 103
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 342
TaqI TCGA 1 cut(s) 52
TasI AATT 1 cut(s) 103
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseI GCWGC 2 cut(s) 17, 310
TspDTI ATGAA 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 263
Vha464I CTTAAG 1 cut(s) 166
XceI RCATGY 1 cut(s) 366
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.