Rh2CG115200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009943
Physical Location & Seq
Reverse (-)
10138259 .. 10140994
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG115200.1

Sequence Viewer

Length: 1131 bp
ATGGAGGGTAACTTATGTGATGTCAACCATTTGGATGCTGATGTCCTTTTACCCCCGAGAAAGCGTCTGCTTGCTGGGTTGAAGAAACAGAGTCCGGATGGTGATAGTAGTTCATGGCTGTCTCTAGTGTCAGCAACAGCTTCGGCTTCGGCTTCTGCTTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTTTAAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCCGAGGAGTTGGTAGAGGTCTCAAAATCGGCTGCTACTGCTGCAGTTAAGGCTGCAGAAGATGCGAGAGCTGCAGCTGAAGAGAAAGCTGCAATAGCTGCAAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTCTCGGACGAAATAGCTAGCAAGGAGAAACACCTGAAAAAGAACAAGCTCAAGAAACATGTCCCAGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTGTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGAGCTATTAATAGCTCACCACGAATCTCAAAGAATCCATCAGGTTCTGACTCTAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCTGAGGTAGCTAGGGTTTCTAATGGAAGTACAGTAATGGATCAAGACCCTGCATCTGCTTGCAATGGTCATGCTGTGGCAGGTAAGCTCGATTTTGAAGACACCATCCTTGACATGTACAAAAATAAAGCAGCTGAAAAAGCATATAGAAATGATAAATCTGGTCGATTGGAGATGGATAATGGGGAAGCAGAATCAAGTCAAACAAAAGAGAAAAATTGGGACGATATGCCTACTAGTGGTAAAAAAAGGGGCCGAGTGAAGCTAAAAAAGTTGCCCTTAAGTGTTTGCACTTTTAGGGATCAGGCAAATCCTAAAGAAGATGTGGGTGCAAGAAGCTCCCCACTAACTGATATGAACATGGGAAATCCAACTGCTGGAAACAAGCCTTTGTTTCCTGCAGAGTCTTCTGCTGATAGTATGCTGCCTATTGAGCCCACACCGGTGTGGAAATGCCAGGAGTTCAAGGCACCTGCATGTGTGAAGCAAAATAAAGTCATGCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

40.53

Weight (kDa)

9.18

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1102
Acc36I ACCTGC 2 cut(s) 692, 1102
AccB1I GGYRCC 1 cut(s) 1090
AccB7I CCANNNNNTGG 1 cut(s) 998
AccIII TCCGGA 1 cut(s) 94
AclWI GGATC 3 cut(s) 221, 669, 930
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 467, 652, 740
AfiI CCNNNNNNNGG 2 cut(s) 860, 998
AflII CTTAAG 1 cut(s) 901
AflIII ACRYGT 3 cut(s) 197, 445, 735
AgeI ACCGGT 1 cut(s) 1063
AgsI TTSAA 4 cut(s) 82, 183, 719, 1087
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 1 cut(s) 1077
AleI CACNNNNGTG 2 cut(s) 1064, 1066
Alw26I GTCTC 2 cut(s) 126, 265
AlwI GGATC 3 cut(s) 221, 669, 930
AlwNI CAGNNNCTG 2 cut(s) 353, 575
Ama87I CYCGRG 2 cut(s) 55, 242
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 513, 874
AseI ATTAAT 1 cut(s) 537
AsiGI ACCGGT 1 cut(s) 1063
AspS9I GGNCC 2 cut(s) 514, 874
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 113, 231, 537
AsuNHI GCTAGC 1 cut(s) 404
AvaI CYCGRG 2 cut(s) 55, 242
BanI GGYRCC 1 cut(s) 1090
BanII GRGCYC 1 cut(s) 1059
BbsI GAAGAC 2 cut(s) 726, 1020
BccI CCATC 4 cut(s) 92, 574, 734, 790
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 1079
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 126, 265
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 4 cut(s) 125, 405, 633, 858
BfmI CTRYAG 5 cut(s) 282, 294, 312, 354, 1020
BfrI CTTAAG 1 cut(s) 901
BfuAI ACCTGC 2 cut(s) 692, 1102
Bme1390I CCNGG 2 cut(s) 517, 1079
BmeT110I CYCGRG 2 cut(s) 55, 242
BmgT120I GGNCC 2 cut(s) 514, 874
BmiI GGNNCC 2 cut(s) 875, 1092
BmrFI CCNGG 2 cut(s) 517, 1079
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 25, 292, 683
BmtI GCTAGC 1 cut(s) 408
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 2 cut(s) 726, 1020
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 2 cut(s) 94, 1063
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 998
Bse118I RCCGGY 1 cut(s) 1063
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1079
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 3 cut(s) 40, 103, 726
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 860, 998
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 2 cut(s) 515, 876
BshNI GGYRCC 1 cut(s) 1090
BshTI ACCGGT 1 cut(s) 1063
BsiHKCI CYCGRG 2 cut(s) 55, 242
BsiSI CCGG 3 cut(s) 95, 517, 1064
BslFI GGGAC 2 cut(s) 434, 857
BslI CCNNNNNNNGG 2 cut(s) 860, 998
BsmAI GTCTC 2 cut(s) 126, 265
BsmFI GGGAC 2 cut(s) 434, 857
BsnI GGCC 2 cut(s) 515, 876
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 2 cut(s) 55, 242
Bsp1286I GDGCHC 1 cut(s) 1059
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 465, 738
Bsp143I GATC 3 cut(s) 226, 661, 922
BspANI GGCC 2 cut(s) 515, 876
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 2 cut(s) 223, 1127
BspLI GGNNCC 2 cut(s) 875, 1092
BspMAI CTGCAG 5 cut(s) 286, 298, 316, 358, 1024
BspMI ACCTGC 2 cut(s) 692, 1102
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 3 cut(s) 221, 669, 930
BspT107I GGYRCC 1 cut(s) 1090
BspTI CTTAAG 1 cut(s) 901
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 1 cut(s) 1063
BsrGI TGTACA 2 cut(s) 465, 738
BsrI ACTGG 1 cut(s) 452
BssAI RCCGGY 1 cut(s) 1063
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 3 cut(s) 226, 661, 922
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 315, 501
BstAFI CTTAAG 1 cut(s) 901
BstAPI GCANNNNNTGC 3 cut(s) 302, 338, 353
BstAUI TGTACA 2 cut(s) 465, 738
BstC8I GCNNGC 3 cut(s) 72, 406, 682
BstDEI CTNAG 2 cut(s) 582, 624
BstF5I GGATG 3 cut(s) 40, 103, 726
BstKTI GATC 3 cut(s) 229, 664, 925
BstMAI GTCTC 2 cut(s) 126, 265
BstMBI GATC 3 cut(s) 226, 661, 922
BstNI CCWGG 1 cut(s) 1079
BstNSI RCATGY 3 cut(s) 449, 739, 1101
BstSCI CCNGG 2 cut(s) 515, 1077
BstSFI CTRYAG 5 cut(s) 282, 294, 312, 354, 1020
BstV2I GAAGAC 2 cut(s) 726, 1020
BsuRI GGCC 2 cut(s) 515, 876
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 40, 103, 726
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 692, 1102
Cac8I GCNNGC 3 cut(s) 72, 406, 682
CaiI CAGNNNCTG 2 cut(s) 353, 575
CciI TCATGA 2 cut(s) 223, 1127
Cfr10I RCCGGY 1 cut(s) 1063
Cfr13I GGNCC 2 cut(s) 514, 874
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 466, 651, 739
CspAI ACCGGT 1 cut(s) 1063
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 9 cut(s) 114, 224, 446, 692, 736, 982, 1098, 1120, 1128
CviQI GTAC 3 cut(s) 466, 651, 739
DdeI CTNAG 2 cut(s) 582, 624
DpnI GATC 3 cut(s) 228, 663, 924
DpnII GATC 3 cut(s) 226, 661, 922
DraI TTTAAA 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 315, 501
EarI CTCTTC 2 cut(s) 315, 501
Eco24I GRGCYC 1 cut(s) 1059
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 55, 242
EcoRII CCWGG 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 1059
FaeI CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
FalI AAGNNNNNCTT 2 cut(s) 884, 916
FaqI GGGAC 2 cut(s) 434, 857
FatI CATG 9 cut(s) 113, 223, 445, 691, 735, 981, 1097, 1119, 1127
FokI GGATG 3 cut(s) 47, 110, 713
FriOI GRGCYC 1 cut(s) 1059
FspBI CTAG 4 cut(s) 125, 405, 633, 858
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 515, 876
HapII CCGG 3 cut(s) 95, 517, 1064
HgaI GACGC 1 cut(s) 53
Hin1II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 6 cut(s) 91, 552, 562, 578, 815, 1025
HpaII CCGG 3 cut(s) 95, 517, 1064
HphI GGTGA 3 cut(s) 113, 231, 537
Hpy166II GTNNAC 2 cut(s) 25, 188
Hpy188I TCNGA 3 cut(s) 394, 577, 625
Hpy188III TCNNGA 5 cut(s) 95, 224, 439, 665, 1128
Hpy8I GTNNAC 2 cut(s) 25, 188
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 582, 624
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 226, 661, 922
LmnI GCTCC 1 cut(s) 965
LweI GCATC 3 cut(s) 25, 292, 683
MaeI CTAG 4 cut(s) 125, 405, 633, 858
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 8, 587
MalI GATC 3 cut(s) 228, 663, 924
MboI GATC 3 cut(s) 226, 661, 922
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 1059
MluCI AATT 3 cut(s) 483, 490, 838
MlyI GAGTC 3 cut(s) 100, 572, 1034
MmeI TCCRAC 1 cut(s) 1016
MnlI CCTC 4 cut(s) 238, 250, 394, 619
MroI TCCGGA 1 cut(s) 94
MseI TTAA 4 cut(s) 203, 288, 537, 902
MslI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
MspA1I CMGCKG 2 cut(s) 317, 755
MspCI CTTAAG 1 cut(s) 901
MspI CCGG 3 cut(s) 95, 517, 1064
MspR9I CCNGG 2 cut(s) 517, 1079
MssI GTTTAAAC 1 cut(s) 204
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 1079
NciI CCSGG 1 cut(s) 517
NdeII GATC 3 cut(s) 226, 661, 922
NheI GCTAGC 1 cut(s) 404
NlaIII CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
NlaIV GGNNCC 2 cut(s) 875, 1092
NmeAIII GCCGAG 1 cut(s) 902
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 3 cut(s) 449, 739, 1101
OliI CACNNNNGTG 2 cut(s) 1064, 1066
PagI TCATGA 2 cut(s) 223, 1127
PaqCI CACCTGC 1 cut(s) 1102
PciI ACATGT 2 cut(s) 445, 735
PfeI GAWTC 3 cut(s) 552, 562, 815
PflMI CCANNNNNTGG 1 cut(s) 998
PinAI ACCGGT 1 cut(s) 1063
PleI GAGTC 3 cut(s) 99, 572, 1033
PmeI GTTTAAAC 1 cut(s) 204
PpsI GAGTC 3 cut(s) 99, 572, 1033
PscI ACATGT 2 cut(s) 445, 735
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 1077
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 1077
PspN4I GGNNCC 2 cut(s) 875, 1092
PspPI GGNCC 2 cut(s) 514, 874
PstI CTGCAG 5 cut(s) 286, 298, 316, 358, 1024
PstNI CAGNNNCTG 2 cut(s) 353, 575
PvuII CAGCTG 2 cut(s) 317, 755
RsaI GTAC 3 cut(s) 467, 652, 740
RsaNI GTAC 3 cut(s) 466, 651, 739
RseI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
SaqAI TTAA 4 cut(s) 203, 288, 537, 902
Sau3AI GATC 3 cut(s) 226, 661, 922
Sau96I GGNCC 2 cut(s) 514, 874
SchI GAGTC 3 cut(s) 100, 572, 1034
ScrFI CCNGG 2 cut(s) 517, 1079
SduI GDGCHC 1 cut(s) 1059
SfaNI GCATC 3 cut(s) 25, 292, 683
SfcI CTRYAG 5 cut(s) 282, 294, 312, 354, 1020
SgrAI CRCCGGYG 1 cut(s) 1063
SmiMI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
SmlI CTYRAG 2 cut(s) 437, 901
SmoI CTYRAG 2 cut(s) 437, 901
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 3 cut(s) 483, 490, 838
SspI AATATT 1 cut(s) 213
SspMI CTAG 4 cut(s) 125, 405, 633, 858
StyD4I CCNGG 2 cut(s) 515, 1077
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 711, 787
TasI AATT 3 cut(s) 483, 490, 838
TatI WGTACW 3 cut(s) 465, 650, 738
TfiI GAWTC 3 cut(s) 552, 562, 815
Tru1I TTAA 4 cut(s) 203, 288, 537, 902
Tru9I TTAA 4 cut(s) 203, 288, 537, 902
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 4 cut(s) 102, 159, 519, 992
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 998
Vha464I CTTAAG 1 cut(s) 901
VspI ATTAAT 1 cut(s) 537
XceI RCATGY 3 cut(s) 449, 739, 1101
XspI CTAG 4 cut(s) 125, 405, 633, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.