Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0009943

Physical Location & Seq

Genomic Coordinates Reverse (-)

9317161 .. 9319599

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1114600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGGCAAACATCTGTGACGTCAATCATTTGGATGCTGATGTCCTTCTGCCTCCTCGAAAACGTCTGCTTGCTGGTTTGAAGAAACAGAGCCCGGATGGTGATAGTGTTGCATGGCTGTCTCTAGTTGCTACTTCAGCTGCAGCTGCAGATTCAGCATCAGCTTCAGCTTCAGCTTCTGCATCTTCTTCTTCATCACATTCTTCAAGTGAATTTAACACCCGCCTTAACAATATATTGAGTTCTCATAACTCTAACCTTTCGCCGGAGCAGCTAGTAGAGGTCTCGAATTCAGCTGCTACTGCTGCAGTGAAGGCTGCAGAGGTTGCGAGAGCTGCAGCTGAAGAGAAAGCCGCAATAGCTGCGAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTTTCGGAAGAAACAGCAGGCAAGGAAAAACACCTGAAAAAGAACAAGTTCAAGAAGCACGTTCCAGTTCAACTCTTGTACAAAAAATACCGACCGATTGAAAATTGTAAGAAGGACGAAGAGTTGGCCCGAAAGTTGCACAGAGCTATAAATAGCTCTCCAAGAATCATAAAGAATTCATCAAGTGCTGACGGAAAGGGTCATAAAAACAAGAGGCCTAAAATCTCACATGGTTCCGAGAAAGTTAGGGTTCCCAATGGGGGCATTGTTTTGGAACAAAACCCGGCATCTACTTGCAATGGACATTCTATGGCAGATAAGGTCAATGTCGAAGGCACCATCCAAGACTTGTACGAAAATGGTAGACCTGATAACGTGGGTCAAATGGAAATGGATAATGGAGAAGCAGAATCAAGTCATATGAAGGAGAAAACTTGGGATGCTGTGAGTACCACTGGTAAAAAGAGGGGAAGAGTGAAGCTAAAAAAGTTGCCGTTGAGCAATTGCACCTTCAGGGATCAAGCAAATCTGAAAGAAGAAACAGATGCGAGAGGCTCCCCATTGACAGACATGAACATGGGTAACCCAAATGCCGGAAAGAAGCCTTTGTTTCCTGTGGAGTCTTCAGCCGATAGTATGCCACCAATTGAGGCTGCACCGGTGTGGAAATGCAAGGATTTCAAGGCTCCAGCATGCGGGAAACAAAGTAAAGTCGTGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

40.4

Weight (kDa)

9.28

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca	FvH4_1g10260
malus_domestica	MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica	Prupe.7G183600_v2.0.a1
pyrus_communis	pycom02g08950 pycom15g20540
rosa_chinensis	RchiOBHm_Chr2g0097081
rosa_laevigata	RLG00000016701
rosa_multiflora	Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii	Rroxscaffold_2G00144990
rosa_rugosa	Rorug02G0063500
rosa_samantha	Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana	Rw2G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	746
AccI	GTMKAC	1 cut(s)	775
AciI	CCGC	3 cut(s)	223, 354, 1107
AclWI	GGATC	1 cut(s)	936
AcsI	RAATTY	3 cut(s)	212, 289, 586
AcuI	CTGAAG	6 cut(s)	120, 150, 156, 363, 907, 1020
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	491, 764, 862
AfiI	CCNNNNNNNGG	4 cut(s)	265, 671, 1004, 1106
AgeI	ACCGGT	1 cut(s)	1069
AgsI	TTSAA	6 cut(s)	82, 207, 463, 482, 512, 1093
AleI	CACNNNNGTG	1 cut(s)	1072
Alw26I	GTCTC	2 cut(s)	126, 289
AlwI	GGATC	1 cut(s)	936
AlwNI	CAGNNNCTG	2 cut(s)	179, 377
AoxI	GGCC	2 cut(s)	537, 626
ApoI	RAATTY	3 cut(s)	212, 289, 586
AsiGI	ACCGGT	1 cut(s)	1069
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	538
AsuC2I	CCSGG	2 cut(s)	95, 695
AsuHPI	GGTGA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	1026
BccI	CCATC	2 cut(s)	92, 758
BceAI	ACGGC	1 cut(s)	889
BcnI	CCSGG	2 cut(s)	95, 695
BcoDI	GTCTC	2 cut(s)	126, 289
BfaI	CTAG	2 cut(s)	125, 275
BfmI	CTRYAG	6 cut(s)	141, 147, 306, 318, 336, 378
Bme1390I	CCNGG	2 cut(s)	95, 695
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	5 cut(s)	646, 663, 748, 967, 1098
BmrFI	CCNGG	2 cut(s)	95, 695
BmsI	GCATC	6 cut(s)	25, 167, 191, 707, 841, 946
BpiI	GAAGAC	1 cut(s)	1026
BpmI	CTGGAG	1 cut(s)	1083
BpuMI	CCSGG	2 cut(s)	95, 695
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	1069
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 671, 1004, 1106
Bse118I	RCCGGY	1 cut(s)	1069
Bse1I	ACTGG	2 cut(s)	476, 871
Bse3DI	GCAATG	1 cut(s)	715
BseGI	GGATG	4 cut(s)	40, 103, 750, 856
BseLI	CCNNNNNNNGG	4 cut(s)	265, 671, 1004, 1106
BseMI	GCAATG	1 cut(s)	715
BseNI	ACTGG	2 cut(s)	476, 871
BseRI	GAGGAG	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	1050
Bsh1285I	CGRYCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	539, 628
BshNI	GGYRCC	1 cut(s)	746
BshTI	ACCGGT	1 cut(s)	1069
BsiEI	CGRYCG	1 cut(s)	506
BsiSI	CCGG	5 cut(s)	95, 266, 695, 1005, 1070
BslI	CCNNNNNNNGG	4 cut(s)	265, 671, 1004, 1106
BsmAI	GTCTC	2 cut(s)	126, 289
BsnI	GGCC	2 cut(s)	539, 628
Bso31I	GGTCTC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	1 cut(s)	928
BspACI	CCGC	3 cut(s)	223, 354, 1107
BspANI	GGCC	2 cut(s)	539, 628
BspLI	GGNNCC	5 cut(s)	646, 663, 748, 967, 1098
BspMAI	CTGCAG	6 cut(s)	145, 151, 310, 322, 340, 382
BspPI	GGATC	1 cut(s)	936
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	289
BsrDI	GCAATG	1 cut(s)	715
BsrFI	RCCGGY	1 cut(s)	1069
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	2 cut(s)	476, 871
BssAI	RCCGGY	1 cut(s)	1069
BssMI	GATC	1 cut(s)	928
BssNI	GRCGYC	1 cut(s)	21
Bst6I	CTCTTC	3 cut(s)	339, 525, 877
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	3 cut(s)	326, 362, 377
BstAUI	TGTACA	1 cut(s)	489
BstC8I	GCNNGC	3 cut(s)	72, 430, 1105
BstEII	GGTNACC	1 cut(s)	992
BstF5I	GGATG	4 cut(s)	40, 103, 750, 856
BstKTI	GATC	1 cut(s)	931
BstMAI	GTCTC	2 cut(s)	126, 289
BstMBI	GATC	1 cut(s)	928
BstMCI	CGRYCG	1 cut(s)	506
BstNSI	RCATGY	1 cut(s)	1107
BstPI	GGTNACC	1 cut(s)	992
BstSCI	CCNGG	2 cut(s)	93, 693
BstSFI	CTRYAG	6 cut(s)	141, 147, 306, 318, 336, 378
BstV2I	GAAGAC	1 cut(s)	1026
BsuRI	GGCC	2 cut(s)	539, 628
BtsCI	GGATG	4 cut(s)	40, 103, 750, 856
BtsI	GCAGTG	2 cut(s)	315, 378
BtsIMutI	CAGTG	3 cut(s)	315, 378, 864
Cac8I	GCNNGC	3 cut(s)	72, 430, 1105
CaiI	CAGNNNCTG	2 cut(s)	179, 377
Cfr10I	RCCGGY	1 cut(s)	1069
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	3 cut(s)	490, 763, 861
CspAI	ACCGGT	1 cut(s)	1069
CviAII	CATG	5 cut(s)	114, 641, 982, 988, 1104
CviQI	GTAC	3 cut(s)	490, 763, 861
DpnI	GATC	1 cut(s)	930
DpnII	GATC	1 cut(s)	928
Eam1104I	CTCTTC	3 cut(s)	339, 525, 877
EarI	CTCTTC	3 cut(s)	339, 525, 877
Eco147I	AGGCCT	1 cut(s)	628
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	289
Eco57I	CTGAAG	6 cut(s)	120, 150, 156, 363, 907, 1020
Eco91I	GGTNACC	1 cut(s)	992
EcoO65I	GGTNACC	1 cut(s)	992
EcoRI	GAATTC	2 cut(s)	289, 586
EcoT38I	GRGCYC	1 cut(s)	95
FaeI	CATG	5 cut(s)	117, 644, 985, 991, 1107
FatI	CATG	5 cut(s)	113, 640, 981, 987, 1103
FauI	CCCGC	2 cut(s)	230, 1100
FauNDI	CATATG	1 cut(s)	831
FblI	GTMKAC	1 cut(s)	775
FokI	GGATG	4 cut(s)	47, 110, 737, 863
FriOI	GRGCYC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	125, 275
GsuI	CTGGAG	1 cut(s)	1083
HaeIII	GGCC	2 cut(s)	539, 628
HapII	CCGG	5 cut(s)	95, 266, 695, 1005, 1070
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	117, 644, 985, 991, 1107
HinfI	GANTC	4 cut(s)	152, 576, 821, 1031
HpaII	CCGG	5 cut(s)	95, 266, 695, 1005, 1070
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188I	TCNGA	3 cut(s)	418, 649, 942
Hpy188III	TCNNGA	3 cut(s)	286, 463, 1134
Hpy8I	GTNNAC	1 cut(s)	776
HpyAV	CCTTC	7 cut(s)	56, 307, 361, 517, 737, 829, 931
HpyCH4IV	ACGT	4 cut(s)	21, 64, 471, 786
HpySE526I	ACGT	4 cut(s)	21, 64, 471, 786
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	117, 644, 985, 991, 1107
Kzo9I	GATC	1 cut(s)	928
LmnI	GCTCC	3 cut(s)	268, 971, 1102
LweI	GCATC	6 cut(s)	25, 167, 191, 707, 841, 946
MaeI	CTAG	2 cut(s)	125, 275
MaeII	ACGT	4 cut(s)	21, 64, 471, 786
MaeIII	GTNAC	2 cut(s)	17, 992
MalI	GATC	1 cut(s)	930
MboI	GATC	1 cut(s)	928
MfeI	CAATTG	2 cut(s)	913, 1056
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	6 cut(s)	212, 289, 514, 586, 913, 1056
MlyI	GAGTC	1 cut(s)	1040
MnlI	CCTC	9 cut(s)	63, 66, 274, 316, 418, 618, 870, 956, 1054
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	2 cut(s)	216, 228
MslI	CAYNNNNRTG	3 cut(s)	33, 986, 1072
MspA1I	CMGCKG	4 cut(s)	140, 146, 296, 341
MspI	CCGG	5 cut(s)	95, 266, 695, 1005, 1070
MspR9I	CCNGG	2 cut(s)	95, 695
MunI	CAATTG	2 cut(s)	913, 1056
NciI	CCSGG	2 cut(s)	95, 695
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	1 cut(s)	928
NlaIII	CATG	5 cut(s)	117, 644, 985, 991, 1107
NlaIV	GGNNCC	5 cut(s)	646, 663, 748, 967, 1098
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	1107
OliI	CACNNNNGTG	1 cut(s)	1072
PaeI	GCATGC	1 cut(s)	1107
PceI	AGGCCT	1 cut(s)	628
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	3 cut(s)	152, 576, 821
PinAI	ACCGGT	1 cut(s)	1069
PleI	GAGTC	1 cut(s)	1039
PpsI	GAGTC	1 cut(s)	1039
PspEI	GGTNACC	1 cut(s)	992
PspN4I	GGNNCC	5 cut(s)	646, 663, 748, 967, 1098
PspPI	GGNCC	1 cut(s)	538
PstI	CTGCAG	6 cut(s)	145, 151, 310, 322, 340, 382
PstNI	CAGNNNCTG	2 cut(s)	179, 377
PvuII	CAGCTG	4 cut(s)	140, 146, 296, 341
RsaI	GTAC	3 cut(s)	491, 764, 862
RsaNI	GTAC	3 cut(s)	490, 763, 861
RseI	CAYNNNNRTG	3 cut(s)	33, 986, 1072
SaqAI	TTAA	2 cut(s)	216, 228
Sau3AI	GATC	1 cut(s)	928
Sau96I	GGNCC	1 cut(s)	538
SchI	GAGTC	1 cut(s)	1040
ScrFI	CCNGG	2 cut(s)	95, 695
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	6 cut(s)	25, 167, 191, 707, 841, 946
SfcI	CTRYAG	6 cut(s)	141, 147, 306, 318, 336, 378
SgrAI	CRCCGGYG	1 cut(s)	1069
SmiMI	CAYNNNNRTG	3 cut(s)	33, 986, 1072
SphI	GCATGC	1 cut(s)	1107
Sse9I	AATT	6 cut(s)	212, 289, 514, 586, 913, 1056
SseBI	AGGCCT	1 cut(s)	628
SsiI	CCGC	3 cut(s)	223, 354, 1107
SspMI	CTAG	2 cut(s)	125, 275
StuI	AGGCCT	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	93, 693
TaiI	ACGT	4 cut(s)	24, 67, 474, 789
TaqI	TCGA	3 cut(s)	58, 287, 741
TaqII	GACCGA	1 cut(s)	520
TasI	AATT	6 cut(s)	212, 289, 514, 586, 913, 1056
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	3 cut(s)	152, 576, 821
Tru1I	TTAA	2 cut(s)	216, 228
Tru9I	TTAA	2 cut(s)	216, 228
TscAI	CASTG	3 cut(s)	315, 378, 871
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	183, 579, 848, 998
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	3 cut(s)	315, 378, 871
XapI	RAATTY	3 cut(s)	212, 289, 586
XceI	RCATGY	1 cut(s)	1107
XmiI	GTMKAC	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	2 cut(s)	125, 275
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.