Rroxscaffold_2G00144990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009943
Physical Location & Seq
Forward (+)
82856963 .. 82859403
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144990.1

Sequence Viewer

Length: 861 bp
ATGGCTGTCTCTAGTGTCAGCAACGGCTTCGGCTTCGGGCTTCTGCTTTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTTTAAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCCGAGGAGTTGGTAGAGGTCTCAAAATCGGCTGCTACTGCTGCAGTTAAGGCTGCAGAAGATGCGAGAGCTGCAGCTGAAGAGAAAGCTGCAATAGCTGCAAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTCTCGGACGAAATAGCCAGCAAGGAGAAACACCTGAAAAAGAACAAGCTCAAGAAACATGTCCCAGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTGTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGAGCTATTAATAGCTCACCACGAATCTCAAAGAATCCATCAGGTTCTGACTCTAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCTGAGGTAGCTAGGGTTTCCAATGGAAGTACAGTATTGGATCAAGACCCTCCATCTGCTTGCAATGGTCATGCTGTGGCAGGTAAGCTTGATTTTGAAGACACCATCCTTGACATGTACAAAAATAAAGCAGCTGAAAAAGCATATAGAAATGATAAATCTGATCGATCGGAGATGGATAATGGGGAAGCAGAATCAAGTCAAACAAAAGAGAAAAATTGGGACGATATGCCTACTAGTGGTAAAAAAAGGGGCCGAGTGAAGCTAAAAAAGTTGCCTTTAAGTGTTTGCACTTTTAGGGATCAGGCAAATCCTAAAGAAGATGTGGGTGCAAGAAGCTCCCCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

30.95

Weight (kDa)

9.39

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 581
AclWI GGATC 3 cut(s) 110, 558, 819
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 3 cut(s) 356, 541, 629
AfiI CCNNNNNNNGG 1 cut(s) 749
AflIII ACRYGT 3 cut(s) 86, 334, 624
AgsI TTSAA 2 cut(s) 72, 608
AhlI ACTAGT 1 cut(s) 746
Alw26I GTCTC 2 cut(s) 13, 154
AlwI GGATC 3 cut(s) 110, 558, 819
AlwNI CAGNNNCTG 2 cut(s) 242, 464
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 402, 763
AseI ATTAAT 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 403, 763
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 120, 426
AvaI CYCGRG 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 615
BccI CCATC 4 cut(s) 463, 571, 623, 679
BceAI ACGGC 1 cut(s) 40
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 13, 154
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 3 cut(s) 12, 522, 747
BfmI CTRYAG 4 cut(s) 171, 183, 201, 243
BfuAI ACCTGC 1 cut(s) 581
Bme1390I CCNGG 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 403, 763
BmiI GGNNCC 1 cut(s) 764
BmrFI CCNGG 1 cut(s) 406
BmrI ACTGGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 181
BmuI ACTGGG 1 cut(s) 335
BpiI GAAGAC 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 676
BsaBI GATNNNNATC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 580
Bse8I GATNNNNATC 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 1 cut(s) 615
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 749
BseMI GCAATG 1 cut(s) 580
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 149
Bsh1285I CGRYCG 1 cut(s) 680
BshFI GGCC 2 cut(s) 404, 765
BshVI ATCGAT 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 680
BsiHKCI CYCGRG 1 cut(s) 131
BsiSI CCGG 1 cut(s) 406
BslFI GGGAC 2 cut(s) 323, 746
BslI CCNNNNNNNGG 1 cut(s) 749
BsmAI GTCTC 2 cut(s) 13, 154
BsmFI GGGAC 2 cut(s) 323, 746
BsnI GGCC 2 cut(s) 404, 765
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 1 cut(s) 131
Bsp1407I TGTACA 2 cut(s) 354, 627
Bsp143I GATC 5 cut(s) 115, 550, 673, 677, 811
BspANI GGCC 2 cut(s) 404, 765
BspCNI CTCAG 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 676
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 764
BspMAI CTGCAG 4 cut(s) 175, 187, 205, 247
BspMI ACCTGC 1 cut(s) 581
BspPI GGATC 3 cut(s) 110, 558, 819
BspTNI GGTCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 580
BsrGI TGTACA 2 cut(s) 354, 627
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 5 cut(s) 115, 550, 673, 677, 811
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 2 cut(s) 204, 390
BstAPI GCANNNNNTGC 3 cut(s) 191, 227, 242
BstAUI TGTACA 2 cut(s) 354, 627
BstC8I GCNNGC 2 cut(s) 295, 571
BstDEI CTNAG 2 cut(s) 471, 513
BstF5I GGATG 1 cut(s) 615
BstKTI GATC 5 cut(s) 118, 553, 676, 680, 814
BstMAI GTCTC 2 cut(s) 13, 154
BstMBI GATC 5 cut(s) 115, 550, 673, 677, 811
BstMCI CGRYCG 1 cut(s) 680
BstNSI RCATGY 2 cut(s) 338, 628
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 4 cut(s) 171, 183, 201, 243
BstV2I GAAGAC 1 cut(s) 615
Bsu15I ATCGAT 1 cut(s) 676
BsuRI GGCC 2 cut(s) 404, 765
BsuTUI ATCGAT 1 cut(s) 676
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 615
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 2 cut(s) 295, 571
CaiI CAGNNNCTG 2 cut(s) 242, 464
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 403, 763
ClaI ATCGAT 1 cut(s) 676
Csp6I GTAC 3 cut(s) 355, 540, 628
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviAII CATG 4 cut(s) 113, 335, 581, 625
CviQI GTAC 3 cut(s) 355, 540, 628
DdeI CTNAG 2 cut(s) 471, 513
DpnI GATC 5 cut(s) 117, 552, 675, 679, 813
DpnII GATC 5 cut(s) 115, 550, 673, 677, 811
DraI TTTAAA 1 cut(s) 93
Eam1104I CTCTTC 2 cut(s) 204, 390
EarI CTCTTC 2 cut(s) 204, 390
Eco31I GGTCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 131
FaeI CATG 4 cut(s) 116, 338, 584, 628
FaiI YATR 8 cut(s) 114, 336, 417, 582, 626, 655, 657, 740
FaqI GGGAC 2 cut(s) 323, 746
FatI CATG 4 cut(s) 112, 334, 580, 624
FokI GGATG 1 cut(s) 602
FspBI CTAG 3 cut(s) 12, 522, 747
HaeIII GGCC 2 cut(s) 404, 765
HapII CCGG 1 cut(s) 406
Hin1II CATG 4 cut(s) 116, 338, 584, 628
HindIII AAGCTT 1 cut(s) 596
HinfI GANTC 4 cut(s) 441, 451, 467, 704
HpaII CCGG 1 cut(s) 406
HphI GGTGA 2 cut(s) 120, 426
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 5 cut(s) 283, 466, 514, 673, 682
Hpy188III TCNNGA 3 cut(s) 113, 328, 554
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 75
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 1 cut(s) 88
HpyF3I CTNAG 2 cut(s) 471, 513
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 4 cut(s) 116, 338, 584, 628
Kzo9I GATC 5 cut(s) 115, 550, 673, 677, 811
LmnI GCTCC 1 cut(s) 854
LpnPI CCDG 7 cut(s) 307, 323, 354, 419, 444, 576, 800
LweI GCATC 1 cut(s) 181
MaeI CTAG 3 cut(s) 12, 522, 747
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 476
MalI GATC 5 cut(s) 117, 552, 675, 679, 813
MboI GATC 5 cut(s) 115, 550, 673, 677, 811
MboII GAAGA 9 cut(s) 42, 45, 48, 60, 200, 221, 407, 620, 842
MfeI CAATTG 1 cut(s) 372
MluCI AATT 3 cut(s) 372, 379, 727
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 5 cut(s) 127, 139, 283, 508, 570
MseI TTAA 4 cut(s) 92, 177, 426, 791
MspA1I CMGCKG 2 cut(s) 206, 644
MspI CCGG 1 cut(s) 406
MspR9I CCNGG 1 cut(s) 406
MssI GTTTAAAC 1 cut(s) 93
MunI CAATTG 1 cut(s) 372
NciI CCSGG 1 cut(s) 406
NdeII GATC 5 cut(s) 115, 550, 673, 677, 811
NlaIII CATG 4 cut(s) 116, 338, 584, 628
NlaIV GGNNCC 1 cut(s) 764
NmeAIII GCCGAG 1 cut(s) 791
NmuCI GTSAC 1 cut(s) 476
NspI RCATGY 2 cut(s) 338, 628
PagI TCATGA 1 cut(s) 112
PciI ACATGT 2 cut(s) 334, 624
PfeI GAWTC 3 cut(s) 441, 451, 704
Ple19I CGATCG 1 cut(s) 680
PleI GAGTC 1 cut(s) 461
PmeI GTTTAAAC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 461
PscI ACATGT 2 cut(s) 334, 624
PshBI ATTAAT 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 764
PspPI GGNCC 2 cut(s) 403, 763
PstI CTGCAG 4 cut(s) 175, 187, 205, 247
PstNI CAGNNNCTG 2 cut(s) 242, 464
PvuI CGATCG 1 cut(s) 680
PvuII CAGCTG 2 cut(s) 206, 644
RsaI GTAC 3 cut(s) 356, 541, 629
RsaNI GTAC 3 cut(s) 355, 540, 628
SaqAI TTAA 4 cut(s) 92, 177, 426, 791
Sau3AI GATC 5 cut(s) 115, 550, 673, 677, 811
Sau96I GGNCC 2 cut(s) 403, 763
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 406
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 4 cut(s) 171, 183, 201, 243
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 3 cut(s) 372, 379, 727
SspI AATATT 1 cut(s) 102
SspMI CTAG 3 cut(s) 12, 522, 747
StyD4I CCNGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 676
TasI AATT 3 cut(s) 372, 379, 727
TatI WGTACW 3 cut(s) 354, 539, 627
TfiI GAWTC 3 cut(s) 441, 451, 704
Tru1I TTAA 4 cut(s) 92, 177, 426, 791
Tru9I TTAA 4 cut(s) 92, 177, 426, 791
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 2 cut(s) 48, 408
TspRI CASTG 1 cut(s) 243
VspI ATTAAT 1 cut(s) 426
XceI RCATGY 2 cut(s) 338, 628
XspI CTAG 3 cut(s) 12, 522, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.