Rw2G008640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009943
Physical Location & Seq
Reverse (-)
8672779 .. 8674967
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G008640.1

Sequence Viewer

Length: 1137 bp
ATGGAGGGTAACTTATGTGATGTCAACCATTTGGATGCTGATGTCCTTTTACCCCCGAGAAAGCGTCTGCTTGCTGGGTTGAAGAAACAGAGTCCGGAGGGTGATAGTAGTTCATGGCTGTCTCTAGTGTCAGCAACAGCTTCGGCTTCGGCTTCTGCTTCTGCTTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTTTAAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCCGAGGAGTTGGTAGAGGTCTCAAAATCGGCTGCTACTGCTGCAGTTAAGGCTGCAGAAGATGCAAGAGCTGCAGCTGAAGAGAAAGCTGCAATAGCTGCAAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTCTCGGACGAAATAGCCAGCAAGGAGAAACACCTGAAAAAGAACAAGCTCAAGAAACATGTCCCAGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTGTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGAGCTATTAATAGCTCACCACGAATCTCAAAGAATCCATCAGGTTCTGACTCTAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCAGAGGTAGCTAGGGTTTCCAATGGAAGTACAGTATTGGATCAAGACCCTGCATCTGGTTGCAATGGTCATGCTGTGGCAGGTAAGCTCGATTTTGAAGACACCATCCTTGACATGTACAAAAATAAAGCAGCTGAAAAAGCATATAGAAATGATAAATCTGGTCGATCGGAGATGGATAATGGGGAAGCAGAATCAAGTCAAACAAAAGAGAAAAATTGGGACGATATGCCTACTAGTGGTAAAAAAAGGGGCCGAGTGAAGCTAAAAAAGTTGCCCTTAAGTGTTTGCACTTTTAGGGATCAGGCAAATCCTAAAGAAGATGTGGGTGCAAGAAGCTCCCCACTAACTGATATGAACATGGGAAATCCAACCGCTGGAAACAAGCCTTTGTTTCCTGCAGAGTCGTCTGCTGATAGTATGCTGCCTATTGAGCCCACACCGGTGTGGAAATGCCAGGAGTTCAAGGCACCTGCATGTGTGAAGCAAAATAAAGTCATGCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

40.64

Weight (kDa)

9.18

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1108
Acc36I ACCTGC 2 cut(s) 698, 1108
AccB1I GGYRCC 1 cut(s) 1096
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 1002
AclWI GGATC 3 cut(s) 227, 675, 936
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 3 cut(s) 473, 658, 746
AfiI CCNNNNNNNGG 3 cut(s) 683, 866, 1004
AflII CTTAAG 1 cut(s) 907
AflIII ACRYGT 3 cut(s) 203, 451, 741
AgeI ACCGGT 1 cut(s) 1069
AgsI TTSAA 4 cut(s) 82, 189, 725, 1093
AhlI ACTAGT 1 cut(s) 863
AjnI CCWGG 1 cut(s) 1083
AleI CACNNNNGTG 2 cut(s) 1070, 1072
Alw26I GTCTC 2 cut(s) 126, 271
AlwI GGATC 3 cut(s) 227, 675, 936
AlwNI CAGNNNCTG 2 cut(s) 359, 581
Ama87I CYCGRG 2 cut(s) 55, 248
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 519, 880
AseI ATTAAT 1 cut(s) 543
AsiGI ACCGGT 1 cut(s) 1069
AspS9I GGNCC 2 cut(s) 520, 880
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 3 cut(s) 113, 237, 543
AvaI CYCGRG 2 cut(s) 55, 248
BanI GGYRCC 1 cut(s) 1096
BanII GRGCYC 1 cut(s) 1065
BbsI GAAGAC 1 cut(s) 732
BccI CCATC 3 cut(s) 580, 740, 796
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 1085
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 2 cut(s) 126, 271
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 3 cut(s) 125, 639, 864
BfmI CTRYAG 5 cut(s) 288, 300, 318, 360, 1026
BfrI CTTAAG 1 cut(s) 907
BfuAI ACCTGC 2 cut(s) 698, 1108
Bme1390I CCNGG 2 cut(s) 523, 1085
BmeT110I CYCGRG 2 cut(s) 55, 248
BmgT120I GGNCC 2 cut(s) 520, 880
BmiI GGNNCC 2 cut(s) 881, 1098
BmrFI CCNGG 2 cut(s) 523, 1085
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 3 cut(s) 25, 298, 689
BmuI ACTGGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 237
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 94, 1069
Bsc4I CCNNNNNNNGG 3 cut(s) 683, 866, 1004
Bse118I RCCGGY 1 cut(s) 1069
Bse1I ACTGG 1 cut(s) 458
Bse3DI GCAATG 1 cut(s) 697
Bse8I GATNNNNATC 1 cut(s) 237
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1085
BseDI CCNNGG 1 cut(s) 249
BseGI GGATG 2 cut(s) 40, 732
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 3 cut(s) 683, 866, 1004
BseMI GCAATG 1 cut(s) 697
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 797
BshFI GGCC 2 cut(s) 521, 882
BshNI GGYRCC 1 cut(s) 1096
BshTI ACCGGT 1 cut(s) 1069
BsiEI CGRYCG 1 cut(s) 797
BsiHKCI CYCGRG 2 cut(s) 55, 248
BsiSI CCGG 3 cut(s) 95, 523, 1070
BslFI GGGAC 2 cut(s) 440, 863
BslI CCNNNNNNNGG 3 cut(s) 683, 866, 1004
BsmAI GTCTC 2 cut(s) 126, 271
BsmFI GGGAC 2 cut(s) 440, 863
BsnI GGCC 2 cut(s) 521, 882
Bso31I GGTCTC 1 cut(s) 271
BsoBI CYCGRG 2 cut(s) 55, 248
Bsp1286I GDGCHC 1 cut(s) 1065
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 471, 744
Bsp143I GATC 4 cut(s) 232, 667, 794, 928
BspACI CCGC 1 cut(s) 1002
BspANI GGCC 2 cut(s) 521, 882
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 2 cut(s) 229, 1133
BspLI GGNNCC 2 cut(s) 881, 1098
BspMAI CTGCAG 5 cut(s) 292, 304, 322, 364, 1030
BspMI ACCTGC 2 cut(s) 698, 1108
BspPI GGATC 3 cut(s) 227, 675, 936
BspT107I GGYRCC 1 cut(s) 1096
BspTI CTTAAG 1 cut(s) 907
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 697
BsrFI RCCGGY 1 cut(s) 1069
BsrGI TGTACA 2 cut(s) 471, 744
BsrI ACTGG 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 1069
BssECI CCNNGG 1 cut(s) 249
BssMI GATC 4 cut(s) 232, 667, 794, 928
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 2 cut(s) 321, 507
BstAFI CTTAAG 1 cut(s) 907
BstAPI GCANNNNNTGC 4 cut(s) 308, 317, 344, 359
BstAUI TGTACA 2 cut(s) 471, 744
BstC8I GCNNGC 2 cut(s) 72, 412
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 2 cut(s) 40, 732
BstKTI GATC 4 cut(s) 235, 670, 797, 931
BstMAI GTCTC 2 cut(s) 126, 271
BstMBI GATC 4 cut(s) 232, 667, 794, 928
BstMCI CGRYCG 1 cut(s) 797
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 3 cut(s) 455, 745, 1107
BstSCI CCNGG 2 cut(s) 521, 1083
BstSFI CTRYAG 5 cut(s) 288, 300, 318, 360, 1026
BstV2I GAAGAC 1 cut(s) 732
BsuRI GGCC 2 cut(s) 521, 882
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 40, 732
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 2 cut(s) 698, 1108
Cac8I GCNNGC 2 cut(s) 72, 412
CaiI CAGNNNCTG 2 cut(s) 359, 581
CciI TCATGA 2 cut(s) 229, 1133
Cfr10I RCCGGY 1 cut(s) 1069
Cfr13I GGNCC 2 cut(s) 520, 880
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 472, 657, 745
CspAI ACCGGT 1 cut(s) 1069
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 9 cut(s) 114, 230, 452, 698, 742, 988, 1104, 1126, 1134
CviQI GTAC 3 cut(s) 472, 657, 745
DdeI CTNAG 1 cut(s) 588
DpnI GATC 4 cut(s) 234, 669, 796, 930
DpnII GATC 4 cut(s) 232, 667, 794, 928
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 321, 507
EarI CTCTTC 2 cut(s) 321, 507
Eco24I GRGCYC 1 cut(s) 1065
Eco31I GGTCTC 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 2 cut(s) 55, 248
EcoRII CCWGG 1 cut(s) 1083
EcoT38I GRGCYC 1 cut(s) 1065
FaeI CATG 9 cut(s) 117, 233, 455, 701, 745, 991, 1107, 1129, 1137
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 2 cut(s) 440, 863
FatI CATG 9 cut(s) 113, 229, 451, 697, 741, 987, 1103, 1125, 1133
FokI GGATG 2 cut(s) 47, 719
FriOI GRGCYC 1 cut(s) 1065
FspBI CTAG 3 cut(s) 125, 639, 864
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 521, 882
HapII CCGG 3 cut(s) 95, 523, 1070
HgaI GACGC 1 cut(s) 53
Hin1II CATG 9 cut(s) 117, 233, 455, 701, 745, 991, 1107, 1129, 1137
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 6 cut(s) 91, 558, 568, 584, 821, 1031
HpaII CCGG 3 cut(s) 95, 523, 1070
HphI GGTGA 3 cut(s) 113, 237, 543
Hpy166II GTNNAC 2 cut(s) 25, 194
Hpy188I TCNGA 4 cut(s) 400, 583, 631, 799
Hpy188III TCNNGA 5 cut(s) 95, 230, 445, 671, 1134
Hpy8I GTNNAC 2 cut(s) 25, 194
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 9 cut(s) 117, 233, 455, 701, 745, 991, 1107, 1129, 1137
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 232, 667, 794, 928
LmnI GCTCC 1 cut(s) 971
LweI GCATC 3 cut(s) 25, 298, 689
MaeI CTAG 3 cut(s) 125, 639, 864
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 8, 593
MalI GATC 4 cut(s) 234, 669, 796, 930
MboI GATC 4 cut(s) 232, 667, 794, 928
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 1065
MluCI AATT 3 cut(s) 489, 496, 844
MlyI GAGTC 3 cut(s) 100, 578, 1040
MmeI TCCRAC 1 cut(s) 1022
MnlI CCTC 5 cut(s) 91, 244, 256, 400, 625
MroI TCCGGA 1 cut(s) 94
MseI TTAA 4 cut(s) 209, 294, 543, 908
MslI CAYNNNNRTG 4 cut(s) 33, 1070, 1072, 1102
MspA1I CMGCKG 3 cut(s) 323, 761, 1004
MspCI CTTAAG 1 cut(s) 907
MspI CCGG 3 cut(s) 95, 523, 1070
MspR9I CCNGG 2 cut(s) 523, 1085
MssI GTTTAAAC 1 cut(s) 210
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 1085
NciI CCSGG 1 cut(s) 523
NdeII GATC 4 cut(s) 232, 667, 794, 928
NlaIII CATG 9 cut(s) 117, 233, 455, 701, 745, 991, 1107, 1129, 1137
NlaIV GGNNCC 2 cut(s) 881, 1098
NmeAIII GCCGAG 1 cut(s) 908
NmuCI GTSAC 1 cut(s) 593
NspI RCATGY 3 cut(s) 455, 745, 1107
OliI CACNNNNGTG 2 cut(s) 1070, 1072
PagI TCATGA 2 cut(s) 229, 1133
PaqCI CACCTGC 1 cut(s) 1108
PciI ACATGT 2 cut(s) 451, 741
PfeI GAWTC 3 cut(s) 558, 568, 821
PflMI CCANNNNNTGG 1 cut(s) 1004
PinAI ACCGGT 1 cut(s) 1069
Ple19I CGATCG 1 cut(s) 797
PleI GAGTC 3 cut(s) 99, 578, 1039
PmeI GTTTAAAC 1 cut(s) 210
PpsI GAGTC 3 cut(s) 99, 578, 1039
PscI ACATGT 2 cut(s) 451, 741
PshBI ATTAAT 1 cut(s) 543
Psp6I CCWGG 1 cut(s) 1083
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 2 cut(s) 881, 1098
PspPI GGNCC 2 cut(s) 520, 880
PstI CTGCAG 5 cut(s) 292, 304, 322, 364, 1030
PstNI CAGNNNCTG 2 cut(s) 359, 581
PvuI CGATCG 1 cut(s) 797
PvuII CAGCTG 2 cut(s) 323, 761
RsaI GTAC 3 cut(s) 473, 658, 746
RsaNI GTAC 3 cut(s) 472, 657, 745
RseI CAYNNNNRTG 4 cut(s) 33, 1070, 1072, 1102
SaqAI TTAA 4 cut(s) 209, 294, 543, 908
Sau3AI GATC 4 cut(s) 232, 667, 794, 928
Sau96I GGNCC 2 cut(s) 520, 880
SchI GAGTC 3 cut(s) 100, 578, 1040
ScrFI CCNGG 2 cut(s) 523, 1085
SduI GDGCHC 1 cut(s) 1065
SfaNI GCATC 3 cut(s) 25, 298, 689
SfcI CTRYAG 5 cut(s) 288, 300, 318, 360, 1026
SgrAI CRCCGGYG 1 cut(s) 1069
SmiMI CAYNNNNRTG 4 cut(s) 33, 1070, 1072, 1102
SmlI CTYRAG 2 cut(s) 443, 907
SmoI CTYRAG 2 cut(s) 443, 907
SpeI ACTAGT 1 cut(s) 863
Sse9I AATT 3 cut(s) 489, 496, 844
SsiI CCGC 1 cut(s) 1002
SspI AATATT 1 cut(s) 219
SspMI CTAG 3 cut(s) 125, 639, 864
StyD4I CCNGG 2 cut(s) 521, 1083
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 717, 793
TasI AATT 3 cut(s) 489, 496, 844
TatI WGTACW 3 cut(s) 471, 656, 744
TfiI GAWTC 3 cut(s) 558, 568, 821
Tru1I TTAA 4 cut(s) 209, 294, 543, 908
Tru9I TTAA 4 cut(s) 209, 294, 543, 908
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 593
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 4 cut(s) 102, 165, 525, 998
TspRI CASTG 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 1004
Vha464I CTTAAG 1 cut(s) 907
VspI ATTAAT 1 cut(s) 543
XceI RCATGY 3 cut(s) 455, 745, 1107
XspI CTAG 3 cut(s) 125, 639, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.