RLG00000016701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0009943
Physical Location & Seq
Reverse (-)
9243745 .. 9244875
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016701

Sequence Viewer

Length: 1131 bp
ATGGAGGGTAACTTATGTGATGTCAACCATTTGGATGCTGATGTCCTTTTACCTCCGAGAAAGCGTCTGCTTGCTGGGTTGAAGAAACAGAGTCCGGAGGGTGATAGTAGTTCATGGCTGTCTCTAGTGTCAGCAACAGCTTCAGCTTCGGCTTCTGCTTCTTCTTCTTCATCGCCTTCTTCAAGTGAACTCAACACACGTTTAAACAGAATATTGACTTCTCATGATCCTAATCTTTCACCTGAGGAGTTGGTAGAGGTCTCAAAGTCGGCTGCTACTGCTGCAGTTAAGGCTGCAGAAGATGCGAGAGCTGCAGCTGAAGAGAAAGCCGCAATAGCTGCAAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTCTCGGACGAAATAGCCAGCAAGGAGAAACACCTGAAAAAGAACAAGCTCAAGAAACATGTCCCGGTTCAGCTCTTGTACAAAAAATATCAGCCAATTGAGAATTGTAAGAAAGATGAAGAGTTGGCCCGGAAGTTGCATAGGGCTATTAATAGCTCACCACGAATCTCAAAGAATCCATCAGGTTCTGACTCTAAGGGTCACAAACACAAGAAGCCTAAAATCTCACAGAGTTCTGAGGTAGTTAGGGTTTCCAATGGAAGTACAGTATTGGATCAAGACCCTGCATCTGCTTGCAATGGTCATGCTGTGGCAGGTAAGCTCGATTTTGAAGACACCATCCTTGACATGTACAAAAATAAAGCAGCTGAAAAAGCATATAGAAATGATAAATCTGGTCGATCGGAGATGGATAATGGGGAAGCAGAATCAAGTCAAACAAAAGAGAAAAATTGGGATGATATGCCTACTAGTGGTAAAAAAAGGGGCAGAGTGAAGCTAAAAAAGTTGCCTTTAAGTGTTTGCACTTTTAGGGATCAGGCAAATCCTAAAGAAGATGTGGGTGCAAGAAGCTCCCCACTAACTGATATGAACATGGGAAATCCGACTGCTGGAAACAAGCCTTTGTTTCCTGCGGAGTCTTCTGCTGATAGTATGCTGCCTATTGAGCCCACACCGGTGTGGAAATGCCAGGAGTTCAAGGCACCCGCATGTGTGAAGCAAAATAAAGTCATGCAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

40.53

Weight (kDa)

9.18

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 1090
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 3 cut(s) 330, 1022, 1095
AclWI GGATC 3 cut(s) 221, 669, 930
AcuI CTGAAG 2 cut(s) 126, 339
AfaI GTAC 3 cut(s) 467, 652, 740
AfiI CCNNNNNNNGG 2 cut(s) 860, 998
AflIII ACRYGT 3 cut(s) 197, 445, 735
AgeI ACCGGT 1 cut(s) 1063
AgsI TTSAA 4 cut(s) 82, 183, 719, 1087
AhlI ACTAGT 1 cut(s) 857
AjnI CCWGG 1 cut(s) 1077
AleI CACNNNNGTG 2 cut(s) 1064, 1066
Alw26I GTCTC 2 cut(s) 126, 265
AlwI GGATC 3 cut(s) 221, 669, 930
AlwNI CAGNNNCTG 2 cut(s) 353, 575
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 1 cut(s) 513
AseI ATTAAT 1 cut(s) 537
AsiGI ACCGGT 1 cut(s) 1063
AspS9I GGNCC 1 cut(s) 514
AsuC2I CCSGG 2 cut(s) 452, 517
AsuHPI GGTGA 3 cut(s) 113, 231, 537
AxyI CCTNAGG 1 cut(s) 243
BanI GGYRCC 1 cut(s) 1090
BanII GRGCYC 1 cut(s) 1059
BbsI GAAGAC 2 cut(s) 726, 1020
BccI CCATC 3 cut(s) 574, 734, 790
BciT130I CCWGG 1 cut(s) 1079
BcnI CCSGG 2 cut(s) 452, 517
BcoDI GTCTC 2 cut(s) 126, 265
BcuI ACTAGT 1 cut(s) 857
BfaI CTAG 2 cut(s) 125, 858
BfmI CTRYAG 4 cut(s) 282, 294, 312, 354
BfuAI ACCTGC 1 cut(s) 692
Bme1390I CCNGG 3 cut(s) 452, 517, 1079
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 1092
BmrFI CCNGG 3 cut(s) 452, 517, 1079
BmsI GCATC 3 cut(s) 25, 292, 683
BpiI GAAGAC 2 cut(s) 726, 1020
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 452, 517
BsaBI GATNNNNATC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 94, 1063
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 998
Bse118I RCCGGY 1 cut(s) 1063
Bse21I CCTNAGG 1 cut(s) 243
Bse3DI GCAATG 1 cut(s) 691
Bse8I GATNNNNATC 1 cut(s) 231
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1079
BseGI GGATG 3 cut(s) 40, 726, 850
BseJI GATNNNNATC 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 860, 998
BseMI GCAATG 1 cut(s) 691
BseMII CTCAG 2 cut(s) 234, 615
BseRI GAGGAG 1 cut(s) 260
BseYI CCCAGC 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 791
BshFI GGCC 1 cut(s) 515
BshNI GGYRCC 1 cut(s) 1090
BshTI ACCGGT 1 cut(s) 1063
BsiEI CGRYCG 1 cut(s) 791
BsiSI CCGG 4 cut(s) 95, 452, 517, 1064
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 860, 998
BsmAI GTCTC 2 cut(s) 126, 265
BsmFI GGGAC 1 cut(s) 434
BsnI GGCC 1 cut(s) 515
Bso31I GGTCTC 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 1059
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 465, 738
Bsp143I GATC 4 cut(s) 226, 661, 788, 922
BspACI CCGC 3 cut(s) 330, 1022, 1095
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 235, 616
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 2 cut(s) 223, 1127
BspLI GGNNCC 1 cut(s) 1092
BspMAI CTGCAG 4 cut(s) 286, 298, 316, 358
BspMI ACCTGC 1 cut(s) 692
BspPI GGATC 3 cut(s) 221, 669, 930
BspT107I GGYRCC 1 cut(s) 1090
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 691
BsrFI RCCGGY 1 cut(s) 1063
BsrGI TGTACA 2 cut(s) 465, 738
BssAI RCCGGY 1 cut(s) 1063
BssMI GATC 4 cut(s) 226, 661, 788, 922
Bst2UI CCWGG 1 cut(s) 1079
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 2 cut(s) 315, 501
BstAPI GCANNNNNTGC 3 cut(s) 302, 338, 353
BstAUI TGTACA 2 cut(s) 465, 738
BstC8I GCNNGC 3 cut(s) 72, 406, 682
BstDEI CTNAG 3 cut(s) 243, 582, 624
BstF5I GGATG 3 cut(s) 40, 726, 850
BstKTI GATC 4 cut(s) 229, 664, 791, 925
BstMAI GTCTC 2 cut(s) 126, 265
BstMBI GATC 4 cut(s) 226, 661, 788, 922
BstMCI CGRYCG 1 cut(s) 791
BstNI CCWGG 1 cut(s) 1079
BstNSI RCATGY 3 cut(s) 449, 739, 1101
BstSCI CCNGG 3 cut(s) 450, 515, 1077
BstSFI CTRYAG 4 cut(s) 282, 294, 312, 354
BstV2I GAAGAC 2 cut(s) 726, 1020
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 1 cut(s) 515
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 40, 726, 850
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 692
Cac8I GCNNGC 3 cut(s) 72, 406, 682
CaiI CAGNNNCTG 2 cut(s) 353, 575
CciI TCATGA 2 cut(s) 223, 1127
Cfr10I RCCGGY 1 cut(s) 1063
Cfr13I GGNCC 1 cut(s) 514
CseI GACGC 1 cut(s) 53
Csp6I GTAC 3 cut(s) 466, 651, 739
CspAI ACCGGT 1 cut(s) 1063
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 9 cut(s) 114, 224, 446, 692, 736, 982, 1098, 1120, 1128
CviQI GTAC 3 cut(s) 466, 651, 739
DdeI CTNAG 3 cut(s) 243, 582, 624
DpnI GATC 4 cut(s) 228, 663, 790, 924
DpnII GATC 4 cut(s) 226, 661, 788, 922
DraI TTTAAA 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 315, 501
EarI CTCTTC 2 cut(s) 315, 501
Eco24I GRGCYC 1 cut(s) 1059
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 126, 339
Eco81I CCTNAGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 1077
EcoT38I GRGCYC 1 cut(s) 1059
FaeI CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
FaqI GGGAC 1 cut(s) 434
FatI CATG 9 cut(s) 113, 223, 445, 691, 735, 981, 1097, 1119, 1127
FauI CCCGC 1 cut(s) 1102
FokI GGATG 3 cut(s) 47, 713, 857
FriOI GRGCYC 1 cut(s) 1059
FspBI CTAG 2 cut(s) 125, 858
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 515
HapII CCGG 4 cut(s) 95, 452, 517, 1064
HgaI GACGC 1 cut(s) 53
Hin1II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 6 cut(s) 91, 552, 562, 578, 815, 1025
HpaII CCGG 4 cut(s) 95, 452, 517, 1064
HphI GGTGA 3 cut(s) 113, 231, 537
Hpy166II GTNNAC 2 cut(s) 25, 188
Hpy188I TCNGA 6 cut(s) 57, 394, 577, 625, 793, 993
Hpy188III TCNNGA 5 cut(s) 95, 224, 439, 665, 1128
Hpy8I GTNNAC 2 cut(s) 25, 188
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 1 cut(s) 199
HpyF3I CTNAG 3 cut(s) 243, 582, 624
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 226, 661, 788, 922
LmnI GCTCC 1 cut(s) 965
LweI GCATC 3 cut(s) 25, 292, 683
MaeI CTAG 2 cut(s) 125, 858
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 8, 587
MalI GATC 4 cut(s) 228, 663, 790, 924
MboI GATC 4 cut(s) 226, 661, 788, 922
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 1059
MluCI AATT 3 cut(s) 483, 490, 838
MlyI GAGTC 3 cut(s) 100, 572, 1034
MmeI TCCRAC 1 cut(s) 1016
MnlI CCTC 6 cut(s) 63, 91, 238, 250, 394, 619
MroI TCCGGA 1 cut(s) 94
MseI TTAA 4 cut(s) 203, 288, 537, 902
MslI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
MspA1I CMGCKG 2 cut(s) 317, 755
MspI CCGG 4 cut(s) 95, 452, 517, 1064
MspR9I CCNGG 3 cut(s) 452, 517, 1079
MssI GTTTAAAC 1 cut(s) 204
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 1079
NciI CCSGG 2 cut(s) 452, 517
NdeII GATC 4 cut(s) 226, 661, 788, 922
NlaIII CATG 9 cut(s) 117, 227, 449, 695, 739, 985, 1101, 1123, 1131
NlaIV GGNNCC 1 cut(s) 1092
NmuCI GTSAC 1 cut(s) 587
NspI RCATGY 3 cut(s) 449, 739, 1101
OliI CACNNNNGTG 2 cut(s) 1064, 1066
PagI TCATGA 2 cut(s) 223, 1127
PciI ACATGT 2 cut(s) 445, 735
PfeI GAWTC 3 cut(s) 552, 562, 815
PinAI ACCGGT 1 cut(s) 1063
Ple19I CGATCG 1 cut(s) 791
PleI GAGTC 3 cut(s) 99, 572, 1033
PmeI GTTTAAAC 1 cut(s) 204
PpsI GAGTC 3 cut(s) 99, 572, 1033
PscI ACATGT 2 cut(s) 445, 735
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 1077
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 1077
PspN4I GGNNCC 1 cut(s) 1092
PspPI GGNCC 1 cut(s) 514
PstI CTGCAG 4 cut(s) 286, 298, 316, 358
PstNI CAGNNNCTG 2 cut(s) 353, 575
PvuI CGATCG 1 cut(s) 791
PvuII CAGCTG 2 cut(s) 317, 755
RsaI GTAC 3 cut(s) 467, 652, 740
RsaNI GTAC 3 cut(s) 466, 651, 739
RseI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
SaqAI TTAA 4 cut(s) 203, 288, 537, 902
Sau3AI GATC 4 cut(s) 226, 661, 788, 922
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 3 cut(s) 100, 572, 1034
ScrFI CCNGG 3 cut(s) 452, 517, 1079
SduI GDGCHC 1 cut(s) 1059
SfaNI GCATC 3 cut(s) 25, 292, 683
SfcI CTRYAG 4 cut(s) 282, 294, 312, 354
SgrAI CRCCGGYG 1 cut(s) 1063
SmiMI CAYNNNNRTG 4 cut(s) 33, 1064, 1066, 1096
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 857
Sse9I AATT 3 cut(s) 483, 490, 838
SsiI CCGC 3 cut(s) 330, 1022, 1095
SspI AATATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 125, 858
StyD4I CCNGG 3 cut(s) 450, 515, 1077
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 711, 787
TasI AATT 3 cut(s) 483, 490, 838
TatI WGTACW 3 cut(s) 465, 650, 738
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 3 cut(s) 552, 562, 815
Tru1I TTAA 4 cut(s) 203, 288, 537, 902
Tru9I TTAA 4 cut(s) 203, 288, 537, 902
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 587
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 4 cut(s) 102, 159, 519, 992
TspRI CASTG 1 cut(s) 354
VspI ATTAAT 1 cut(s) 537
XceI RCATGY 3 cut(s) 449, 739, 1101
XspI CTAG 2 cut(s) 125, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.