Prupe.7G183600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009943
Physical Location & Seq
Forward (+)
17822186 .. 17825164
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G183600.1

Sequence Viewer

Length: 1137 bp
ATGGAGGCTAACATATGTGATGTCAATCATTTGGATGCCGATGTCTTATTGCCTCCACGAAAGCGTCTGCTTGCTGGATTGAAGAAACAGAGTCCGGATGGTGATGGATCTTCATGGCTGTCTCTAGTTGCTTCTTCAGCTTCAGCATCAGCTTCGGCATCTGCATCTTCCTCTTCATCGCCTTCTTCAAGTGACTTTAACACACGTCTTAACAATATATTGAGTTCTCATAACCCTAACCTTTCACCTGAGGAGCTGGTAGAGATCTCAAATTCAGCTGCTGCTGCTGCAGCTAAGGCTGCAGAGGATGCAAGAGCTGCGGCTGAAGAGAAAGCTGGCATAGCTGCAAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGAATTGGTTGCCTCTTTTTCTGAAGATGTAGGCTGTAAGGAAAAATACCTGAAAAAGAACAAGCTCAAGAAGCATGTTCCAGTTCAGCTTTTGTACAAAAAATACCAACCAATTGAGAATTGCAAGAAAGATGAAGAGTTGGCCCGAAAGTTGCATAGAGCTATAAATAGCTCCCCGAGAATCTCAAAGAATTCATCAAGTACTGACTCGAAAGGTCATAAACACAAGAAGCCTAAAATCGTGCACAGTTCTGAGAAAGTTAGGGTTTCCAATGGGGGTATTGAGTTGGAACAAAACCCTGAACCTGCTTGCAATGGACATGCAGTAGCAGGTAAGGTCAATGTTGAAGGCACCATTCTAGAGTTGTACAAAAACAAAGCCGAAGAAAAAGCTTATAGACATGATAAAACTGGTCGATTGGAGATGGATAATGCAGAAGCAGAATCAAGTCAGATGAAGGAAAAAAGTTGGGATGATGTGTGTACTAGTGGTAAAAAGAGGGGAAGAGTGAAGCTAAAAAAGTTGCCTTTAAGCATTTGCACATTCAGGGATCAAGCAAATCCCAAAGAAGAAATGGATGCAAGAGGCTCTCCATTGACTGTCATAAACAGGGGCAATCCTACTGCTGGAAAGAAGCCTTTGTTTCCTGTGGAGTCTTCTGCTGATAGTATGCTGCCAATTGAGGCCACACCAGTGTGGAAATACCAGGATTTCAAGGCGCCTGCGTGTGTGAAACAAAATAAAGTCATGCAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

40.87

Weight (kDa)

9.24

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 691, 698
AccB1I GGYRCC 2 cut(s) 728, 1096
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 1 cut(s) 320
AclWI GGATC 2 cut(s) 115, 936
AcsI RAATTY 2 cut(s) 271, 568
AcuI CTGAAG 4 cut(s) 120, 126, 345, 420
AcyI GRCGYC 1 cut(s) 1097
AfaI GTAC 4 cut(s) 473, 580, 746, 862
AfiI CCNNNNNNNGG 1 cut(s) 1004
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 4 cut(s) 82, 189, 725, 1093
AhlI ACTAGT 1 cut(s) 863
AjiI CACGTC 1 cut(s) 206
AjnI CCWGG 1 cut(s) 1083
AleI CACNNNNGTG 2 cut(s) 1070, 1072
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 620
AlwI GGATC 2 cut(s) 115, 936
AlwNI CAGNNNCTG 2 cut(s) 281, 359
Ama87I CYCGRG 1 cut(s) 553
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 519, 1062
ApaLI GTGCAC 1 cut(s) 620
ApoI RAATTY 2 cut(s) 271, 568
AspLEI GCGC 1 cut(s) 1099
AspS9I GGNCC 1 cut(s) 520
AsuHPI GGTGA 2 cut(s) 113, 237
AvaI CYCGRG 1 cut(s) 553
AxyI CCTNAGG 1 cut(s) 249
BaeGI GKGCMC 1 cut(s) 624
BanI GGYRCC 2 cut(s) 728, 1096
BbsI GAAGAC 1 cut(s) 1026
Bbv12I GWGCWC 1 cut(s) 624
BccI CCATC 3 cut(s) 92, 98, 796
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BciT130I CCWGG 1 cut(s) 1085
BcoDI GTCTC 1 cut(s) 126
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 3 cut(s) 125, 737, 864
BfmI CTRYAG 3 cut(s) 288, 300, 360
BfoI RGCGCY 1 cut(s) 1100
BfuAI ACCTGC 2 cut(s) 691, 698
BglII AGATCT 1 cut(s) 264
BmcAI AGTACT 1 cut(s) 580
Bme1390I CCNGG 1 cut(s) 1085
BmeT110I CYCGRG 1 cut(s) 553
BmgBI CACGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 520
BmiI GGNNCC 2 cut(s) 730, 1098
BmrFI CCNGG 1 cut(s) 1085
BmsI GCATC 6 cut(s) 25, 155, 167, 173, 298, 946
BpiI GAAGAC 1 cut(s) 1026
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 24
BsaHI GRCGYC 1 cut(s) 1097
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 1004
Bse1I ACTGG 3 cut(s) 458, 793, 1070
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 697
Bse8I GATNNNNATC 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 1 cut(s) 1085
BseGI GGATG 5 cut(s) 40, 103, 313, 856, 961
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 1004
BseMI GCAATG 1 cut(s) 697
BseMII CTCAG 2 cut(s) 240, 621
BseNI ACTGG 3 cut(s) 458, 793, 1070
BseRI GAGGAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 624
BshFI GGCC 2 cut(s) 521, 1064
BshNI GGYRCC 2 cut(s) 728, 1096
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 1 cut(s) 1004
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 2 cut(s) 521, 1064
BsoBI CYCGRG 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 471, 744
Bsp143I GATC 3 cut(s) 107, 264, 928
BspACI CCGC 1 cut(s) 320
BspANI GGCC 2 cut(s) 521, 1064
BspCNI CTCAG 2 cut(s) 241, 622
BspEI TCCGGA 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 730, 1098
BspMAI CTGCAG 3 cut(s) 292, 304, 364
BspMI ACCTGC 2 cut(s) 691, 698
BspPI GGATC 2 cut(s) 115, 936
BspT107I GGYRCC 2 cut(s) 728, 1096
BsrDI GCAATG 1 cut(s) 697
BsrGI TGTACA 2 cut(s) 471, 744
BsrI ACTGG 3 cut(s) 458, 793, 1070
BssMI GATC 3 cut(s) 107, 264, 928
BssNI GRCGYC 1 cut(s) 1097
Bst2UI CCWGG 1 cut(s) 1085
Bst4CI ACNGT 2 cut(s) 626, 979
Bst6I CTCTTC 4 cut(s) 178, 321, 507, 877
BstACI GRCGYC 1 cut(s) 1097
BstAPI GCANNNNNTGC 3 cut(s) 308, 317, 359
BstAUI TGTACA 2 cut(s) 471, 744
BstC8I GCNNGC 4 cut(s) 72, 337, 688, 1101
BstDEI CTNAG 3 cut(s) 249, 294, 630
BstF5I GGATG 5 cut(s) 40, 103, 313, 856, 961
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 1 cut(s) 1099
BstKTI GATC 3 cut(s) 110, 267, 931
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 3 cut(s) 107, 264, 928
BstNI CCWGG 1 cut(s) 1085
BstNSI RCATGY 2 cut(s) 455, 701
BstSCI CCNGG 1 cut(s) 1083
BstSFI CTRYAG 3 cut(s) 288, 300, 360
BstSLI GKGCMC 1 cut(s) 624
BstV2I GAAGAC 1 cut(s) 1026
BstX2I RGATCY 2 cut(s) 107, 264
BstYI RGATCY 2 cut(s) 107, 264
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 2 cut(s) 521, 1064
BtgZI GCGATG 1 cut(s) 162
BtrI CACGTC 1 cut(s) 206
BtsCI GGATG 5 cut(s) 40, 103, 313, 856, 961
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 360, 1077
BveI ACCTGC 2 cut(s) 691, 698
Cac8I GCNNGC 4 cut(s) 72, 337, 688, 1101
CaiI CAGNNNCTG 2 cut(s) 281, 359
CfoI GCGC 1 cut(s) 1099
Cfr13I GGNCC 1 cut(s) 520
CseI GACGC 1 cut(s) 53
Csp6I GTAC 4 cut(s) 472, 579, 745, 861
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 5 cut(s) 114, 452, 698, 779, 1126
CviQI GTAC 4 cut(s) 472, 579, 745, 861
DdeI CTNAG 3 cut(s) 249, 294, 630
DinI GGCGCC 1 cut(s) 1098
DpnI GATC 3 cut(s) 109, 266, 930
DpnII GATC 3 cut(s) 107, 264, 928
Eam1104I CTCTTC 4 cut(s) 178, 321, 507, 877
EarI CTCTTC 4 cut(s) 178, 321, 507, 877
Eco57I CTGAAG 4 cut(s) 120, 126, 345, 420
Eco81I CCTNAGG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 1083
EgeI GGCGCC 1 cut(s) 1098
EheI GGCGCC 1 cut(s) 1098
FaeI CATG 5 cut(s) 117, 455, 701, 782, 1129
FatI CATG 5 cut(s) 113, 451, 697, 778, 1125
FauNDI CATATG 1 cut(s) 14
FokI GGATG 5 cut(s) 47, 110, 320, 863, 968
FspBI CTAG 3 cut(s) 125, 737, 864
GlaI GCGC 1 cut(s) 1098
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 2 cut(s) 521, 1064
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 1099
Hin1I GRCGYC 1 cut(s) 1097
Hin1II CATG 5 cut(s) 117, 455, 701, 782, 1129
Hin6I GCGC 1 cut(s) 1097
HinP1I GCGC 1 cut(s) 1097
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 5 cut(s) 91, 558, 584, 821, 1031
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 113, 237
Hpy166II GTNNAC 2 cut(s) 622, 861
Hpy188I TCNGA 3 cut(s) 400, 631, 831
Hpy188III TCNNGA 3 cut(s) 95, 445, 737
Hpy8I GTNNAC 2 cut(s) 622, 861
HpyAV CCTTC 3 cut(s) 192, 719, 829
HpyCH4III ACNGT 2 cut(s) 626, 979
HpyCH4IV ACGT 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 249, 294, 630
HpySE526I ACGT 1 cut(s) 205
Hsp92I GRCGYC 1 cut(s) 1097
Hsp92II CATG 5 cut(s) 117, 455, 701, 782, 1129
HspAI GCGC 1 cut(s) 1097
KasI GGCGCC 1 cut(s) 1096
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 107, 264, 928
LmnI GCTCC 2 cut(s) 253, 554
LweI GCATC 6 cut(s) 25, 155, 167, 173, 298, 946
MaeI CTAG 3 cut(s) 125, 737, 864
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 191
MalI GATC 3 cut(s) 109, 266, 930
MboI GATC 3 cut(s) 107, 264, 928
MfeI CAATTG 2 cut(s) 489, 1056
MflI RGATCY 2 cut(s) 107, 264
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 6 cut(s) 271, 380, 489, 496, 568, 1056
Mly113I GGCGCC 1 cut(s) 1097
MlyI GAGTC 3 cut(s) 100, 578, 1040
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 63, 181, 244, 298, 400, 870, 956, 1054
MroI TCCGGA 1 cut(s) 94
MseI TTAA 3 cut(s) 198, 210, 908
MslI CAYNNNNRTG 3 cut(s) 33, 1070, 1072
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 1085
MunI CAATTG 2 cut(s) 489, 1056
MvaI CCWGG 1 cut(s) 1085
NarI GGCGCC 1 cut(s) 1097
NdeI CATATG 1 cut(s) 14
NdeII GATC 3 cut(s) 107, 264, 928
NlaIII CATG 5 cut(s) 117, 455, 701, 782, 1129
NlaIV GGNNCC 2 cut(s) 730, 1098
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 2 cut(s) 455, 701
OliI CACNNNNGTG 2 cut(s) 1070, 1072
PfeI GAWTC 2 cut(s) 558, 821
PleI GAGTC 3 cut(s) 99, 578, 1039
PluTI GGCGCC 1 cut(s) 1100
PpsI GAGTC 3 cut(s) 99, 578, 1039
Psp6I CCWGG 1 cut(s) 1083
PspGI CCWGG 1 cut(s) 1083
PspN4I GGNNCC 2 cut(s) 730, 1098
PspPI GGNCC 1 cut(s) 520
PstI CTGCAG 3 cut(s) 292, 304, 364
PstNI CAGNNNCTG 2 cut(s) 281, 359
PsuI RGATCY 2 cut(s) 107, 264
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 4 cut(s) 473, 580, 746, 862
RsaNI GTAC 4 cut(s) 472, 579, 745, 861
RseI CAYNNNNRTG 3 cut(s) 33, 1070, 1072
SaqAI TTAA 3 cut(s) 198, 210, 908
Sau3AI GATC 3 cut(s) 107, 264, 928
Sau96I GGNCC 1 cut(s) 520
ScaI AGTACT 1 cut(s) 580
SchI GAGTC 3 cut(s) 100, 578, 1040
ScrFI CCNGG 1 cut(s) 1085
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 6 cut(s) 25, 155, 167, 173, 298, 946
SfcI CTRYAG 3 cut(s) 288, 300, 360
SfoI GGCGCC 1 cut(s) 1098
SmiMI CAYNNNNRTG 3 cut(s) 33, 1070, 1072
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
SpeI ACTAGT 1 cut(s) 863
Sse9I AATT 6 cut(s) 271, 380, 489, 496, 568, 1056
SsiI CCGC 1 cut(s) 320
SspDI GGCGCC 1 cut(s) 1096
SspMI CTAG 3 cut(s) 125, 737, 864
StyD4I CCNGG 1 cut(s) 1083
TaaI ACNGT 2 cut(s) 626, 979
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 587, 793
TasI AATT 6 cut(s) 271, 380, 489, 496, 568, 1056
TatI WGTACW 4 cut(s) 471, 578, 744, 860
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 2 cut(s) 558, 821
Tru1I TTAA 3 cut(s) 198, 210, 908
Tru9I TTAA 3 cut(s) 198, 210, 908
TscAI CASTG 2 cut(s) 360, 1077
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 5 cut(s) 102, 165, 525, 561, 848
TspRI CASTG 2 cut(s) 360, 1077
VneI GTGCAC 1 cut(s) 620
XapI RAATTY 2 cut(s) 271, 568
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 2 cut(s) 455, 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 949
XspI CTAG 3 cut(s) 125, 737, 864
ZrmI AGTACT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.