Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009943

Physical Location & Seq

Genomic Coordinates Reverse (-)

6171278 .. 6172405

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGGCAAACATCTGTGACGTCAATCATTTGGATGCTGATGTCCTTCTGCCTCCACGAAAACGTCTGCTTGCTGGTTTGAAGAAACAGAGCCCGGATGGTGATAGTGTTGCATGGCTGTCTCTAGTTGCTACTTCAGCTGCAGCTGCAGATTCAGCATCAGCTTCAGCTTCTGCATCTTCTTCTTCATCGCATTCTTCAAGTGAATTTAACACCCGCCTTAACAATATATTGAGTTCTCATAACTCTAACCTTTCGCCGGAGCAGCTAGTAGAGGTCTCCAATTCAGCTGCTAGTGCTGCAGCGAAGGCTGCAGAGGTTGCGAGGGCTGCAGCTGAAGAGAAAGCTGCAATAGCTGCGAAGGCAGTGGCTGCAGCCAAGAGTGCTTTAGATTTGGTTGCCTCTTTTTCTGAAGAAACAGCAGGCAAGGAAAAACACCTGAAAAAGAACAAGCTCAAGAAGCATGTTCCAGTTCAACTCTTGTACAAAAAATACCGGCCAATTGAGAATTGTAAGAAGGACGAAGAGTTGGCCCGAAAGTTGCACAGAGCTATAAATAGCTCTCCAAGAATTATAAAGAATTCATCAAGTGCTGACGGAAAGGGTCATAAAAACAAGAGGCCTAAAATCTCACATGGTTCCGAGAAAGTTAGGGTTCCCAATGGGAGCATTGTTTTGGAAGAAAACCCGGCAGCTACTTGCAATGGACATTCCATGGCAGATAAGGTCAATGTTGAAGGCACCATCCAAGACTTGTACGAAAATGGTAGACCTGATAACGTGGGTCGAATGGAAATGGATAATGGAGAAGCAGAATCAAGTCATATGAAGGAGAAAAATTGGGATGCTGTGAGTACCACTGGTAAAAAGAGGGGAAGAGTGAAGCTAAAAAAGTTGCCGTTGAGCAATTGCACCTTCAGGGATCAAGCAAATCTGAAAGAAGAAACAGATGCAAGAGGCTCCCCATTGACAGACATGAACATGGGTAACCCTAATGCCGGAAAGAAGCCTTTGTTTCCCGTGGAGTCTTCAGCCGATAGTATGCCACCAATTGAGGCTGCACCGGTGTGGAAATGCAAGGATTTCAAGGCTCCAGCGTGCGGGAAACAAAATAAAGTGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

40.15

Weight (kDa)

9.28

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca	FvH4_1g10260
malus_domestica	MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica	Prupe.7G183600_v2.0.a1
pyrus_communis	pycom02g08950 pycom15g20540
rosa_chinensis	RchiOBHm_Chr2g0097081
rosa_laevigata	RLG00000016701
rosa_multiflora	Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii	Rroxscaffold_2G00144990
rosa_rugosa	Rorug02G0063500
rosa_samantha	Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana	Rw2G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	575
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	769
AciI	CCGC	2 cut(s)	217, 1101
AclWI	GGATC	1 cut(s)	930
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	2 cut(s)	206, 580
AcuI	CTGAAG	6 cut(s)	120, 150, 357, 432, 901, 1014
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	485, 758, 856
AfiI	CCNNNNNNNGG	3 cut(s)	259, 998, 1100
AgeI	ACCGGT	1 cut(s)	1063
AgsI	TTSAA	5 cut(s)	82, 201, 476, 737, 1087
AleI	CACNNNNGTG	1 cut(s)	1066
Alw26I	GTCTC	2 cut(s)	126, 283
AlwI	GGATC	1 cut(s)	930
AlwNI	CAGNNNCTG	2 cut(s)	173, 371
AoxI	GGCC	3 cut(s)	497, 531, 620
ApoI	RAATTY	2 cut(s)	206, 580
AsiGI	ACCGGT	1 cut(s)	1063
AspS9I	GGNCC	1 cut(s)	532
AsuC2I	CCSGG	2 cut(s)	95, 689
AsuHPI	GGTGA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	1020
BccI	CCATC	2 cut(s)	92, 752
BceAI	ACGGC	1 cut(s)	883
BcnI	CCSGG	2 cut(s)	95, 689
BcoDI	GTCTC	2 cut(s)	126, 283
BfaI	CTAG	3 cut(s)	125, 269, 294
BfmI	CTRYAG	6 cut(s)	141, 147, 300, 312, 330, 372
Bme1390I	CCNGG	2 cut(s)	95, 689
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	5 cut(s)	640, 657, 742, 961, 1092
BmrFI	CCNGG	2 cut(s)	95, 689
BmsI	GCATC	5 cut(s)	25, 167, 185, 835, 940
BpiI	GAAGAC	1 cut(s)	1020
BpmI	CTGGAG	1 cut(s)	1077
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	2 cut(s)	95, 689
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	2 cut(s)	714, 1020
BsaWI	WCCGGW	1 cut(s)	1063
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 998, 1100
Bse118I	RCCGGY	2 cut(s)	495, 1063
Bse1I	ACTGG	2 cut(s)	470, 865
Bse3DI	GCAATG	1 cut(s)	709
BseDI	CCNNGG	2 cut(s)	714, 1020
BseGI	GGATG	4 cut(s)	40, 103, 744, 850
BseLI	CCNNNNNNNGG	3 cut(s)	259, 998, 1100
BseMI	GCAATG	1 cut(s)	709
BseNI	ACTGG	2 cut(s)	470, 865
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	3 cut(s)	499, 533, 622
BshNI	GGYRCC	1 cut(s)	740
BshTI	ACCGGT	1 cut(s)	1063
BsiSI	CCGG	6 cut(s)	95, 260, 496, 689, 999, 1064
BslI	CCNNNNNNNGG	3 cut(s)	259, 998, 1100
BsmAI	GTCTC	2 cut(s)	126, 283
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	3 cut(s)	499, 533, 622
Bso31I	GGTCTC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	483
Bsp143I	GATC	1 cut(s)	922
Bsp19I	CCATGG	1 cut(s)	714
BspACI	CCGC	2 cut(s)	217, 1101
BspANI	GGCC	3 cut(s)	499, 533, 622
BspLI	GGNNCC	5 cut(s)	640, 657, 742, 961, 1092
BspMAI	CTGCAG	6 cut(s)	145, 151, 304, 316, 334, 376
BspPI	GGATC	1 cut(s)	930
BspT107I	GGYRCC	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	709
BsrFI	RCCGGY	2 cut(s)	495, 1063
BsrGI	TGTACA	1 cut(s)	483
BsrI	ACTGG	2 cut(s)	470, 865
BssAI	RCCGGY	2 cut(s)	495, 1063
BssECI	CCNNGG	2 cut(s)	714, 1020
BssMI	GATC	1 cut(s)	922
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	714
Bst6I	CTCTTC	3 cut(s)	333, 519, 871
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	3 cut(s)	320, 356, 371
BstAUI	TGTACA	1 cut(s)	483
BstC8I	GCNNGC	3 cut(s)	72, 424, 1099
BstDSI	CCRYGG	2 cut(s)	714, 1020
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	4 cut(s)	40, 103, 744, 850
BstKTI	GATC	1 cut(s)	925
BstMAI	GTCTC	2 cut(s)	126, 283
BstMBI	GATC	1 cut(s)	922
BstNSI	RCATGY	1 cut(s)	467
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	2 cut(s)	93, 687
BstSFI	CTRYAG	6 cut(s)	141, 147, 300, 312, 330, 372
BstV2I	GAAGAC	1 cut(s)	1020
BsuRI	GGCC	3 cut(s)	499, 533, 622
BtgI	CCRYGG	2 cut(s)	714, 1020
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	40, 103, 744, 850
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	372, 858
Cac8I	GCNNGC	3 cut(s)	72, 424, 1099
CaiI	CAGNNNCTG	2 cut(s)	173, 371
Cfr10I	RCCGGY	2 cut(s)	495, 1063
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	3 cut(s)	484, 757, 855
CspAI	ACCGGT	1 cut(s)	1063
CviAII	CATG	6 cut(s)	114, 464, 635, 715, 976, 982
CviQI	GTAC	3 cut(s)	484, 757, 855
DpnI	GATC	1 cut(s)	924
DpnII	GATC	1 cut(s)	922
EaeI	YGGCCR	1 cut(s)	497
Eam1104I	CTCTTC	3 cut(s)	333, 519, 871
EarI	CTCTTC	3 cut(s)	333, 519, 871
Eco130I	CCWWGG	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	622
Eco24I	GRGCYC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	283
Eco57I	CTGAAG	6 cut(s)	120, 150, 357, 432, 901, 1014
Eco91I	GGTNACC	1 cut(s)	986
EcoO65I	GGTNACC	1 cut(s)	986
EcoRI	GAATTC	1 cut(s)	580
EcoT14I	CCWWGG	1 cut(s)	714
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	6 cut(s)	117, 467, 638, 718, 979, 985
FatI	CATG	6 cut(s)	113, 463, 634, 714, 975, 981
FauI	CCCGC	2 cut(s)	224, 1094
FauNDI	CATATG	1 cut(s)	825
FblI	GTMKAC	1 cut(s)	769
FokI	GGATG	4 cut(s)	47, 110, 731, 857
FriOI	GRGCYC	1 cut(s)	95
FspBI	CTAG	3 cut(s)	125, 269, 294
GsuI	CTGGAG	1 cut(s)	1077
HaeIII	GGCC	3 cut(s)	499, 533, 622
HapII	CCGG	6 cut(s)	95, 260, 496, 689, 999, 1064
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	117, 467, 638, 718, 979, 985
HinfI	GANTC	3 cut(s)	152, 815, 1025
HpaII	CCGG	6 cut(s)	95, 260, 496, 689, 999, 1064
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	3 cut(s)	412, 643, 936
Hpy188III	TCNNGA	2 cut(s)	457, 1125
Hpy8I	GTNNAC	1 cut(s)	770
HpyAV	CCTTC	7 cut(s)	56, 301, 355, 511, 731, 823, 925
HpyCH4IV	ACGT	3 cut(s)	21, 64, 780
HpySE526I	ACGT	3 cut(s)	21, 64, 780
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	117, 467, 638, 718, 979, 985
Kzo9I	GATC	1 cut(s)	922
LmnI	GCTCC	4 cut(s)	262, 666, 965, 1096
LweI	GCATC	5 cut(s)	25, 167, 185, 835, 940
MaeI	CTAG	3 cut(s)	125, 269, 294
MaeII	ACGT	3 cut(s)	21, 64, 780
MaeIII	GTNAC	2 cut(s)	17, 986
MalI	GATC	1 cut(s)	924
MboI	GATC	1 cut(s)	922
MfeI	CAATTG	3 cut(s)	501, 907, 1050
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	9 cut(s)	206, 283, 501, 508, 570, 580, 838, 907, 1050
MlyI	GAGTC	1 cut(s)	1034
MnlI	CCTC	9 cut(s)	63, 268, 310, 318, 412, 612, 864, 950, 1048
MseI	TTAA	2 cut(s)	210, 222
MslI	CAYNNNNRTG	3 cut(s)	33, 980, 1066
MspA1I	CMGCKG	4 cut(s)	140, 146, 290, 335
MspI	CCGG	6 cut(s)	95, 260, 496, 689, 999, 1064
MspR9I	CCNGG	2 cut(s)	95, 689
MunI	CAATTG	3 cut(s)	501, 907, 1050
Mva1269I	GAATGC	1 cut(s)	193
NciI	CCSGG	2 cut(s)	95, 689
NcoI	CCATGG	1 cut(s)	714
NdeI	CATATG	1 cut(s)	825
NdeII	GATC	1 cut(s)	922
NlaIII	CATG	6 cut(s)	117, 467, 638, 718, 979, 985
NlaIV	GGNNCC	5 cut(s)	640, 657, 742, 961, 1092
NmuCI	GTSAC	1 cut(s)	17
NspI	RCATGY	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	622
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	152, 815
PinAI	ACCGGT	1 cut(s)	1063
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
PsiI	TTATAA	1 cut(s)	575
PspEI	GGTNACC	1 cut(s)	986
PspN4I	GGNNCC	5 cut(s)	640, 657, 742, 961, 1092
PspPI	GGNCC	1 cut(s)	532
PstI	CTGCAG	6 cut(s)	145, 151, 304, 316, 334, 376
PstNI	CAGNNNCTG	2 cut(s)	173, 371
PvuII	CAGCTG	4 cut(s)	140, 146, 290, 335
RsaI	GTAC	3 cut(s)	485, 758, 856
RsaNI	GTAC	3 cut(s)	484, 757, 855
RseI	CAYNNNNRTG	3 cut(s)	33, 980, 1066
SaqAI	TTAA	2 cut(s)	210, 222
Sau3AI	GATC	1 cut(s)	922
Sau96I	GGNCC	1 cut(s)	532
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	2 cut(s)	95, 689
SduI	GDGCHC	1 cut(s)	95
SfaNI	GCATC	5 cut(s)	25, 167, 185, 835, 940
SfcI	CTRYAG	6 cut(s)	141, 147, 300, 312, 330, 372
SgrAI	CRCCGGYG	1 cut(s)	1063
SmiMI	CAYNNNNRTG	3 cut(s)	33, 980, 1066
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	9 cut(s)	206, 283, 501, 508, 570, 580, 838, 907, 1050
SseBI	AGGCCT	1 cut(s)	622
SsiI	CCGC	2 cut(s)	217, 1101
SspMI	CTAG	3 cut(s)	125, 269, 294
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	2 cut(s)	93, 687
StyI	CCWWGG	1 cut(s)	714
TaiI	ACGT	3 cut(s)	24, 67, 783
TaqI	TCGA	1 cut(s)	787
TasI	AATT	9 cut(s)	206, 283, 501, 508, 570, 580, 838, 907, 1050
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	2 cut(s)	152, 815
Tru1I	TTAA	2 cut(s)	210, 222
Tru9I	TTAA	2 cut(s)	210, 222
TscAI	CASTG	2 cut(s)	372, 865
TseFI	GTSAC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	177, 573, 842, 992
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	372, 865
XapI	RAATTY	2 cut(s)	206, 580
XceI	RCATGY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	769
XspI	CTAG	3 cut(s)	125, 269, 294
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.