AT4G35510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009943
Physical Location & Seq
Reverse (-)
16860452 .. 16862420
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35510.1

Sequence Viewer

Length: 1002 bp
ATGGAGACGAATCCGTGTGACATGAATCAGCTCGATTCCGATTCGCATCTCCCTCCTCGAAAACGATTACTTGCTGGATTCAAGAAATTTAACTCCAACGGCATTAATGGATCTTCTCCTTCAGATTTCGCTTCTTCTTCCTCTACTTCAAACTCAAACGGATCTTCCTCTGCTTCCACCAATGTTCAGACCCATCTCGGCAACTTGTTATCTTCTCCTTTCAACAATGACCAGTCACCTGAAGAGCTCGTGGAGGCAACGAGATCTGCAGCTGCTTTAGCGGTTAAAGCTGCAAAGGCTGCGAGAGCTATTGCTAACGAGAAGGCTTTGATTTCCGCTAAGGCGATTGCTGCGGCTAAGAGGGCATTGGAATTGGTTGATTCTTTTCCTAAAGAAGCAATGGCTGATTGCAAGGAGAGGTCTCCTAGGAAGAACAAGCAGAAGAAACATGTCCCCGTCGAGCTCTTGTATTCAAAGGGGCAGCTAAGAGACGAGGAAGATGATTTAGCGCGTAGGTTGCATCGAGCTATAGACAATACGTCGTATCCTAGAGTCTTGAGAACTAGCGAGGAGAATGGTCAGAGATACAAGAAGCAGAAGAAGAACAAGAGCGTAGTTGAAGGTGGGAGTAGTAGTATTATAGTGACCGGTTCTATGAAAGACATTGCTGGAGTTGTGGATTCAGACAGCTCCTATGAAGGATTAGAGATAGCTAGATCAAACAGGGATGAAGCGGATTCGATGCTGATGATGGAGAAATCAGGGGAAGAAAGCAACTCATTGGTTAAAAGAAGAGGAAGAGTGAAGCTAAAGAAGCTTCCTTTGAGCATTTGTAATTCTAGAAATCAAGAAAACGGAACTTCCTCCGCGTCTCCATTACCGGTGGCTCAGCCGCAGGAAGACGGTGGTGCGATCACGGTCATAGCAGGATCGTCGTCTTGGAAATGCCAGGACATAAAGGCACCAGAATGTGTGAAGCAGAACAAAGCCGTACGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

35.96

Weight (kDa)

9.3

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009943)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17540 AT2G17540 AT2G17540 AT2G17540 AT4G35510
fragaria_vesca FvH4_1g10260
malus_domestica MD02G1114600.v1.1 MD15G1230400.v1.1
prunus_persica Prupe.7G183600_v2.0.a1
pyrus_communis pycom02g08950 pycom15g20540
rosa_chinensis RchiOBHm_Chr2g0097081
rosa_laevigata RLG00000016701
rosa_multiflora Rmu_co8013720.1_g000001 Rmu_sc0017953.1_g000005
rosa_roxburghii Rroxscaffold_2G00144990
rosa_rugosa Rorug02G0063500
rosa_samantha Rh2BG113000 Rh2CG115200 Rh2DG114400
rosa_wichuraiana Rw2G008640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 961
AccII CGCG 2 cut(s) 511, 869
AciI CCGC 6 cut(s) 281, 336, 353, 734, 867, 893
AclWI GGATC 3 cut(s) 118, 169, 937
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 2 cut(s) 105, 261
AfaI GTAC 1 cut(s) 993
AflIII ACRYGT 1 cut(s) 448
AgeI ACCGGT 2 cut(s) 647, 880
AgsI TTSAA 5 cut(s) 82, 150, 223, 474, 620
AhdI GACNNNNNGTC 1 cut(s) 538
AjnI CCWGG 1 cut(s) 948
Alw21I GWGCWC 2 cut(s) 249, 465
Alw26I GTCTC 3 cut(s) 426, 483, 876
AlwI GGATC 3 cut(s) 118, 169, 937
ApeKI GCWGC 6 cut(s) 269, 272, 290, 299, 350, 481
ApoI RAATTY 1 cut(s) 86
AseI ATTAAT 1 cut(s) 105
AsiGI ACCGGT 2 cut(s) 647, 880
AspA2I CCTAGG 1 cut(s) 425
AspLEI GCGC 1 cut(s) 511
AsuHPI GGTGA 1 cut(s) 228
AvrII CCTAGG 1 cut(s) 425
BanI GGYRCC 1 cut(s) 961
BanII GRGCYC 2 cut(s) 249, 465
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 906
Bbv12I GWGCWC 2 cut(s) 249, 465
BbvI GCAGC 6 cut(s) 259, 277, 281, 286, 337, 493
BccI CCATC 2 cut(s) 201, 745
BceAI ACGGC 2 cut(s) 115, 974
BcgI CGANNNNNNTGC 2 cut(s) 915, 949
BciT130I CCWGG 1 cut(s) 950
BciVI GTATCC 1 cut(s) 555
BcoDI GTCTC 3 cut(s) 426, 483, 876
BfaI CTAG 5 cut(s) 426, 549, 564, 714, 840
BfmI CTRYAG 2 cut(s) 267, 528
BfuI GTATCC 1 cut(s) 555
BglII AGATCT 1 cut(s) 263
BisI GCNGC 8 cut(s) 270, 273, 291, 300, 351, 354, 482, 893
BlnI CCTAGG 1 cut(s) 425
BlpI GCTNAGC 1 cut(s) 888
BlsI GCNGC 8 cut(s) 271, 274, 292, 301, 352, 355, 483, 894
Bme1390I CCNGG 1 cut(s) 950
BmeRI GACNNNNNGTC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 963
BmrFI CCNGG 1 cut(s) 950
BmsI GCATC 3 cut(s) 55, 529, 732
BpiI GAAGAC 1 cut(s) 906
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 888
BpuEI CTTGAG 1 cut(s) 577
BsaBI GATNNNNATC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 1 cut(s) 425
BsaWI WCCGGW 2 cut(s) 647, 880
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bse118I RCCGGY 2 cut(s) 647, 880
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 2 cut(s) 405, 663
Bse8I GATNNNNATC 1 cut(s) 45
BseBI CCWGG 1 cut(s) 950
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 1 cut(s) 45
BseMI GCAATG 2 cut(s) 405, 663
BseMII CTCAG 1 cut(s) 902
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 45, 584
BseXI GCAGC 6 cut(s) 259, 277, 281, 286, 337, 493
Bsh1236I CGCG 2 cut(s) 511, 869
BshNI GGYRCC 1 cut(s) 961
BshTI ACCGGT 2 cut(s) 647, 880
BsiHKAI GWGCWC 2 cut(s) 249, 465
BsiSI CCGG 2 cut(s) 648, 881
BsiWI CGTACG 1 cut(s) 991
BslFI GGGAC 1 cut(s) 437
BsmAI GTCTC 3 cut(s) 426, 483, 876
BsmBI CGTCTC 2 cut(s) 483, 876
BsmFI GGGAC 1 cut(s) 437
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 249, 465
Bsp143I GATC 6 cut(s) 110, 161, 263, 716, 912, 929
Bsp1720I GCTNAGC 1 cut(s) 888
BspACI CCGC 6 cut(s) 281, 336, 353, 734, 867, 893
BspCNI CTCAG 1 cut(s) 901
BspFNI CGCG 2 cut(s) 511, 869
BspLI GGNNCC 1 cut(s) 963
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 3 cut(s) 118, 169, 937
BspQI GCTCTTC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 961
BspTNI GGTCTC 1 cut(s) 426
BsrDI GCAATG 2 cut(s) 405, 663
BsrFI RCCGGY 2 cut(s) 647, 880
BsrI ACTGG 1 cut(s) 232
BssAI RCCGGY 2 cut(s) 647, 880
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 6 cut(s) 110, 161, 263, 716, 912, 929
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 425
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 950
Bst4CI ACNGT 3 cut(s) 905, 919, 996
Bst6I CTCTTC 3 cut(s) 237, 787, 793
BstAPI GCANNNNNTGC 1 cut(s) 299
BstDEI CTNAG 4 cut(s) 339, 357, 485, 888
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 2 cut(s) 511, 869
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 6 cut(s) 113, 164, 266, 719, 915, 932
BstMAI GTCTC 3 cut(s) 426, 483, 876
BstMBI GATC 6 cut(s) 110, 161, 263, 716, 912, 929
BstMWI GCNNNNNNNGC 9 cut(s) 278, 287, 296, 299, 305, 350, 362, 517, 814
BstNI CCWGG 1 cut(s) 950
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 948
BstSFI CTRYAG 2 cut(s) 267, 528
BstUI CGCG 2 cut(s) 511, 869
BstV1I GCAGC 6 cut(s) 259, 277, 281, 286, 337, 493
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 3 cut(s) 110, 161, 263
BstYI RGATCY 3 cut(s) 110, 161, 263
BsuI GTATCC 1 cut(s) 555
BtsCI GGATG 1 cut(s) 733
CfoI GCGC 1 cut(s) 511
Cfr10I RCCGGY 2 cut(s) 647, 880
CseI GACGC 1 cut(s) 858
Csp6I GTAC 1 cut(s) 992
CspAI ACCGGT 2 cut(s) 647, 880
CviAII CATG 2 cut(s) 22, 449
CviQI GTAC 1 cut(s) 992
DdeI CTNAG 4 cut(s) 339, 357, 485, 888
DpnI GATC 6 cut(s) 112, 163, 265, 718, 914, 931
DpnII GATC 6 cut(s) 110, 161, 263, 716, 912, 929
DriI GACNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 3 cut(s) 237, 787, 793
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 3 cut(s) 237, 787, 793
Ecl136II GAGCTC 2 cut(s) 247, 463
Eco130I CCWWGG 1 cut(s) 425
Eco24I GRGCYC 2 cut(s) 249, 465
Eco31I GGTCTC 1 cut(s) 426
Eco53kI GAGCTC 2 cut(s) 247, 463
Eco57I CTGAAG 2 cut(s) 105, 261
EcoICRI GAGCTC 2 cut(s) 247, 463
EcoRII CCWGG 1 cut(s) 948
EcoT14I CCWWGG 1 cut(s) 425
EcoT38I GRGCYC 2 cut(s) 249, 465
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 2 cut(s) 483, 876
FaeI CATG 2 cut(s) 25, 452
FaiI YATR 9 cut(s) 23, 450, 530, 641, 656, 696, 923, 956, 1000
FaqI GGGAC 1 cut(s) 437
FatI CATG 2 cut(s) 21, 448
Fnu4HI GCNGC 8 cut(s) 270, 273, 291, 300, 351, 354, 482, 893
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 2 cut(s) 249, 465
Fsp4HI GCNGC 8 cut(s) 270, 273, 291, 300, 351, 354, 482, 893
FspBI CTAG 5 cut(s) 426, 549, 564, 714, 840
GlaI GCGC 1 cut(s) 510
GluI GCNGC 8 cut(s) 270, 273, 291, 300, 351, 354, 482, 893
GsuI CTGGAG 1 cut(s) 690
HapII CCGG 2 cut(s) 648, 881
HgaI GACGC 1 cut(s) 858
HhaI GCGC 1 cut(s) 511
Hin1II CATG 2 cut(s) 25, 452
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 9 cut(s) 10, 25, 35, 41, 78, 380, 552, 680, 737
HpaII CCGG 2 cut(s) 648, 881
HphI GGTGA 1 cut(s) 228
Hpy188I TCNGA 5 cut(s) 40, 124, 189, 582, 685
Hpy188III TCNNGA 4 cut(s) 82, 556, 840, 848
Hpy99I CGWCG 3 cut(s) 461, 544, 937
HpyAV CCTTC 4 cut(s) 129, 316, 614, 692
HpyCH4III ACNGT 3 cut(s) 905, 919, 996
HpyCH4IV ACGT 1 cut(s) 539
HpyCH4V TGCA 4 cut(s) 269, 293, 411, 520
HpyF10VI GCNNNNNNNGC 9 cut(s) 278, 287, 296, 299, 305, 350, 362, 517, 814
HpyF3I CTNAG 4 cut(s) 339, 357, 485, 888
HpySE526I ACGT 1 cut(s) 539
Hsp92II CATG 2 cut(s) 25, 452
HspAI GCGC 1 cut(s) 509
Kzo9I GATC 6 cut(s) 110, 161, 263, 716, 912, 929
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 695
Lsp1109I GCAGC 6 cut(s) 259, 277, 281, 286, 337, 493
LweI GCATC 3 cut(s) 55, 529, 732
MaeI CTAG 5 cut(s) 426, 549, 564, 714, 840
MaeII ACGT 1 cut(s) 539
MaeIII GTNAC 3 cut(s) 17, 234, 643
MalI GATC 6 cut(s) 112, 163, 265, 718, 914, 931
MboI GATC 6 cut(s) 110, 161, 263, 716, 912, 929
MflI RGATCY 3 cut(s) 110, 161, 263
MhlI GDGCHC 2 cut(s) 249, 465
MluCI AATT 3 cut(s) 86, 371, 835
MlyI GAGTC 1 cut(s) 561
MmeI TCCRAC 1 cut(s) 120
MseI TTAA 4 cut(s) 90, 105, 285, 786
MslI CAYNNNNRTG 1 cut(s) 967
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 2 cut(s) 648, 881
MspR9I CCNGG 1 cut(s) 950
MvaI CCWGG 1 cut(s) 950
MvnI CGCG 2 cut(s) 511, 869
MwoI GCNNNNNNNGC 9 cut(s) 278, 287, 296, 299, 305, 350, 362, 517, 814
NdeII GATC 6 cut(s) 110, 161, 263, 716, 912, 929
NlaIII CATG 2 cut(s) 25, 452
NlaIV GGNNCC 1 cut(s) 963
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 3 cut(s) 17, 234, 643
NspI RCATGY 1 cut(s) 452
PciI ACATGT 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 237
PfeI GAWTC 8 cut(s) 10, 25, 35, 41, 78, 380, 680, 737
Pfl23II CGTACG 1 cut(s) 991
PinAI ACCGGT 2 cut(s) 647, 880
PkrI GCNGC 8 cut(s) 271, 274, 292, 301, 352, 355, 483, 894
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PscI ACATGT 1 cut(s) 448
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 2 cut(s) 249, 465
Psp6I CCWGG 1 cut(s) 948
PspGI CCWGG 1 cut(s) 948
PspLI CGTACG 1 cut(s) 991
PspN4I GGNNCC 1 cut(s) 963
PstI CTGCAG 1 cut(s) 271
PsuI RGATCY 3 cut(s) 110, 161, 263
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 993
RsaNI GTAC 1 cut(s) 992
RseI CAYNNNNRTG 1 cut(s) 967
SacI GAGCTC 2 cut(s) 249, 465
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 4 cut(s) 90, 105, 285, 786
SatI GCNGC 8 cut(s) 270, 273, 291, 300, 351, 354, 482, 893
Sau3AI GATC 6 cut(s) 110, 161, 263, 716, 912, 929
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 1 cut(s) 950
SduI GDGCHC 2 cut(s) 249, 465
SfaNI GCATC 3 cut(s) 55, 529, 732
SfcI CTRYAG 2 cut(s) 267, 528
SmiMI CAYNNNNRTG 1 cut(s) 967
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 3 cut(s) 86, 371, 835
SsiI CCGC 6 cut(s) 281, 336, 353, 734, 867, 893
SspMI CTAG 5 cut(s) 426, 549, 564, 714, 840
SstI GAGCTC 2 cut(s) 249, 465
StyD4I CCNGG 1 cut(s) 948
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 3 cut(s) 905, 919, 996
TaiI ACGT 1 cut(s) 542
TaqI TCGA 5 cut(s) 33, 58, 459, 523, 740
TasI AATT 3 cut(s) 86, 371, 835
TauI GCSGC 2 cut(s) 356, 895
TfiI GAWTC 8 cut(s) 10, 25, 35, 41, 78, 380, 680, 737
Tru1I TTAA 4 cut(s) 90, 105, 285, 786
Tru9I TTAA 4 cut(s) 90, 105, 285, 786
TseFI GTSAC 3 cut(s) 17, 234, 643
TseI GCWGC 6 cut(s) 269, 272, 290, 299, 350, 481
Tsp45I GTSAC 3 cut(s) 17, 234, 643
TspDTI ATGAA 4 cut(s) 38, 671, 711, 744
TspGWI ACGGA 2 cut(s) 174, 870
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 839
XceI RCATGY 1 cut(s) 452
XmaJI CCTAGG 1 cut(s) 425
XspI CTAG 5 cut(s) 426, 549, 564, 714, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.