Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003560

Physical Location & Seq

Genomic Coordinates Forward (+)

7837067 .. 7838476

Gene Structure 1410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACTCACCACCGCAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTACCTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCTCCTCTTGCTCGTGTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTACACCGGTCAGTTCTTGTACTGCGGTAAGAAAGCTACTCTCGTCGTTGGAAATGTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCATCACGTCGGTGATCGTGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAACCCTGACAGCGACACTACTAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGATGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACCATCAGCACATTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAGGTTGGTCTTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTTCAGCTGCCAAGGCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

258

Amino Acids

27.86

Weight (kDa)

10.91

Isoelectric Point (pI)

25.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	2 - 90	1.8e-23	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	98 - 224	6.7e-46	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18020 AT3G51190 AT4G36130
fragaria_vesca	FvH4_3g11370 FvH4_3g11370 FvH4_3g19850
malus_domestica	MD05G1264000.v1.1 MD10G1241900.v1.1
prunus_persica	Prupe.1G202200_v2.0.a1 Prupe.4G101600_v2.0.a1
pyrus_communis	pycom05g24810 pycom10g20260 pycom10g20270
rosa_chinensis	RchiOBHm_Chr5g0018321 RchiOBHm_Chr5g0033291
rosa_laevigata	RLG00000032351 RLG00000033468
rosa_multiflora	Rmu_co8428655.1_g000001 Rmu_sc0002206.1_g000007 Rmu_sc0005702.1_g000002 Rmu_sc0009715.1_g000002 Rmu_sc0011919.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046690
rosa_rugosa	Rorug05G0041300 Rorug05G0139200
rosa_samantha	Rh5AG134500 Rh5AG230600 Rh5BG133300 Rh5BG231600 Rh5CG145000 Rh5CG260300 Rh5DG134700 Rh5DG236700
rosa_wichuraiana	Rw5G011760 Rw5G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	554
AciI	CCGC	4 cut(s)	35, 67, 234, 270
AclWI	GGATC	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	345, 741
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	5 cut(s)	248, 266, 557, 566, 670
AfiI	CCNNNNNNNGG	2 cut(s)	161, 635
AflIII	ACRYGT	1 cut(s)	552
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	49, 208
AhdI	GACNNNNNGTC	1 cut(s)	732
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	154, 691
AleI	CACNNNNGTG	1 cut(s)	360
AluBI	AGCT	7 cut(s)	20, 223, 281, 332, 386, 749, 761
AluI	AGCT	7 cut(s)	20, 223, 281, 332, 386, 749, 761
Alw21I	GWGCWC	3 cut(s)	22, 169, 225
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	587
ApeKI	GCWGC	4 cut(s)	716, 749, 752, 761
AsiGI	ACCGGT	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	53, 374, 404
AsuII	TTCGAA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	591
BanII	GRGCYC	2 cut(s)	22, 225
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	3 cut(s)	22, 169, 225
BbvI	GCAGC	4 cut(s)	703, 736, 739, 748
BccI	CCATC	2 cut(s)	460, 654
BciT130I	CCWGG	2 cut(s)	156, 693
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	3 cut(s)	381, 438, 775
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	5 cut(s)	234, 717, 750, 753, 762
BlsI	GCNGC	5 cut(s)	235, 718, 751, 754, 763
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	156, 693
Bme18I	GGWCC	1 cut(s)	74
BmeRI	GACNNNNNGTC	1 cut(s)	732
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	156, 693
BmsI	GCATC	5 cut(s)	361, 473, 525, 634, 673
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	2 cut(s)	107, 524
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	4 cut(s)	321, 351, 715, 745
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 635
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	617, 666, 733
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	156, 693
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	4 cut(s)	144, 193, 488, 625
BseLI	CCNNNNNNNGG	2 cut(s)	161, 635
BseMII	CTCAG	2 cut(s)	516, 751
BseNI	ACTGG	3 cut(s)	617, 666, 733
BseRI	GAGGAG	2 cut(s)	159, 651
BseXI	GCAGC	4 cut(s)	703, 736, 739, 748
Bsh1236I	CGCG	1 cut(s)	554
BshFI	GGCC	1 cut(s)	589
BshTI	ACCGGT	1 cut(s)	251
BsiHKAI	GWGCWC	3 cut(s)	22, 169, 225
BsiSI	CCGG	2 cut(s)	77, 252
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	2 cut(s)	161, 635
BsmAI	GTCTC	1 cut(s)	740
BsmBI	CGTCTC	1 cut(s)	740
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	589
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	3 cut(s)	22, 169, 225
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	141, 151, 314, 364
BspACI	CCGC	4 cut(s)	35, 67, 234, 270
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	2 cut(s)	517, 750
BspFNI	CGCG	1 cut(s)	554
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	3 cut(s)	617, 666, 733
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	4 cut(s)	141, 151, 314, 364
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	765
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	156, 693
Bst4CI	ACNGT	2 cut(s)	569, 673
Bst6I	CTCTTC	2 cut(s)	230, 569
BstACI	GRCGYC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	461
BstDEI	CTNAG	5 cut(s)	81, 311, 525, 591, 737
BstEII	GGTNACC	2 cut(s)	116, 641
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	4 cut(s)	144, 193, 488, 625
BstFNI	CGCG	1 cut(s)	554
BstKTI	GATC	4 cut(s)	144, 154, 317, 367
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	4 cut(s)	141, 151, 314, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 551, 758, 761, 767
BstNI	CCWGG	2 cut(s)	156, 693
BstPI	GGTNACC	2 cut(s)	116, 641
BstSCI	CCNGG	2 cut(s)	154, 691
BstUI	CGCG	1 cut(s)	554
BstV1I	GCAGC	4 cut(s)	703, 736, 739, 748
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	589
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	4 cut(s)	144, 193, 488, 625
BtsIMutI	CAGTG	1 cut(s)	624
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	5 cut(s)	247, 265, 556, 565, 669
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	2 cut(s)	585, 632
CviQI	GTAC	5 cut(s)	247, 265, 556, 565, 669
DdeI	CTNAG	5 cut(s)	81, 311, 525, 591, 737
DpnI	GATC	4 cut(s)	143, 153, 316, 366
DpnII	GATC	4 cut(s)	141, 151, 314, 364
DriI	GACNNNNNGTC	1 cut(s)	732
Eam1104I	CTCTTC	2 cut(s)	230, 569
Eam1105I	GACNNNNNGTC	1 cut(s)	732
EarI	CTCTTC	2 cut(s)	230, 569
Ecl136II	GAGCTC	2 cut(s)	20, 223
Eco130I	CCWWGG	1 cut(s)	765
Eco24I	GRGCYC	2 cut(s)	22, 225
Eco47I	GGWCC	1 cut(s)	74
Eco53kI	GAGCTC	2 cut(s)	20, 223
Eco57I	CTGAAG	2 cut(s)	345, 741
Eco81I	CCTNAGG	1 cut(s)	591
Eco91I	GGTNACC	2 cut(s)	116, 641
EcoICRI	GAGCTC	2 cut(s)	20, 223
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoO65I	GGTNACC	2 cut(s)	116, 641
EcoRII	CCWGG	2 cut(s)	154, 691
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	2 cut(s)	22, 225
ErhI	CCWWGG	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	740
FaeI	CATG	2 cut(s)	588, 635
FaiI	YATR	5 cut(s)	245, 494, 586, 611, 633
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	584, 631
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	234, 717, 750, 753, 762
FokI	GGATG	4 cut(s)	131, 180, 495, 612
FriOI	GRGCYC	2 cut(s)	22, 225
Fsp4HI	GCNGC	5 cut(s)	234, 717, 750, 753, 762
FspBI	CTAG	3 cut(s)	381, 438, 775
GluI	GCNGC	5 cut(s)	234, 717, 750, 753, 762
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	589
HapII	CCGG	2 cut(s)	77, 252
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	588, 635
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	2 cut(s)	77, 252
HphI	GGTGA	3 cut(s)	53, 374, 404
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	2 cut(s)	17, 740
Hpy188III	TCNNGA	3 cut(s)	133, 208, 323
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	5 cut(s)	134, 233, 293, 350, 362
HpyAV	CCTTC	3 cut(s)	233, 320, 694
HpyCH4III	ACNGT	2 cut(s)	569, 673
HpyCH4IV	ACGT	3 cut(s)	25, 345, 357
HpyCH4V	TGCA	4 cut(s)	342, 486, 686, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 551, 758, 761, 767
HpyF3I	CTNAG	5 cut(s)	81, 311, 525, 591, 737
HpySE526I	ACGT	3 cut(s)	25, 345, 357
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	588, 635
Kzo9I	GATC	4 cut(s)	141, 151, 314, 364
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	4 cut(s)	172, 220, 329, 622
Lsp1109I	GCAGC	4 cut(s)	703, 736, 739, 748
LweI	GCATC	5 cut(s)	361, 473, 525, 634, 673
MaeI	CTAG	3 cut(s)	381, 438, 775
MaeII	ACGT	3 cut(s)	25, 345, 357
MaeIII	GTNAC	5 cut(s)	116, 133, 181, 641, 659
MalI	GATC	4 cut(s)	143, 153, 316, 366
MboI	GATC	4 cut(s)	141, 151, 314, 364
MboII	GAAGA	6 cut(s)	37, 217, 475, 478, 531, 586
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	3 cut(s)	22, 169, 225
MluI	ACGCGT	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	274
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	2 cut(s)	360, 630
MspA1I	CMGCKG	1 cut(s)	761
MspI	CCGG	2 cut(s)	77, 252
MspR9I	CCNGG	2 cut(s)	156, 693
MvaI	CCWGG	2 cut(s)	156, 693
MvnI	CGCG	1 cut(s)	554
MwoI	GCNNNNNNNGC	5 cut(s)	173, 551, 758, 761, 767
NdeII	GATC	4 cut(s)	141, 151, 314, 364
NlaIII	CATG	2 cut(s)	588, 635
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	3 cut(s)	133, 181, 659
NspV	TTCGAA	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	3 cut(s)	102, 234, 354
PfeI	GAWTC	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	691
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	5 cut(s)	235, 718, 751, 754, 763
Psp124BI	GAGCTC	2 cut(s)	22, 225
Psp6I	CCWGG	2 cut(s)	154, 691
PspEI	GGTNACC	2 cut(s)	116, 641
PspGI	CCWGG	2 cut(s)	154, 691
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	5 cut(s)	248, 266, 557, 566, 670
RsaNI	GTAC	5 cut(s)	247, 265, 556, 565, 669
RseI	CAYNNNNRTG	2 cut(s)	360, 630
SacI	GAGCTC	2 cut(s)	22, 225
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	5 cut(s)	234, 717, 750, 753, 762
Sau3AI	GATC	4 cut(s)	141, 151, 314, 364
Sau96I	GGNCC	1 cut(s)	74
ScaI	AGTACT	1 cut(s)	670
ScrFI	CCNGG	2 cut(s)	156, 693
SduI	GDGCHC	3 cut(s)	22, 169, 225
SfaNI	GCATC	5 cut(s)	361, 473, 525, 634, 673
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	2 cut(s)	360, 630
SmlI	CTYRAG	2 cut(s)	122, 539
SmoI	CTYRAG	2 cut(s)	122, 539
SsiI	CCGC	4 cut(s)	35, 67, 234, 270
SspMI	CTAG	3 cut(s)	381, 438, 775
SstI	GAGCTC	2 cut(s)	22, 225
StyD4I	CCNGG	2 cut(s)	154, 691
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	2 cut(s)	569, 673
TaiI	ACGT	3 cut(s)	28, 348, 360
TaqI	TCGA	3 cut(s)	96, 348, 461
TatI	WGTACW	3 cut(s)	246, 264, 668
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	3 cut(s)	133, 181, 659
TseI	GCWGC	4 cut(s)	716, 749, 752, 761
Tsp45I	GTSAC	3 cut(s)	133, 181, 659
TspDTI	ATGAA	1 cut(s)	626
TspGWI	ACGGA	5 cut(s)	31, 77, 152, 179, 191
TspRI	CASTG	1 cut(s)	624
VpaK11BI	GGWCC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XspI	CTAG	3 cut(s)	381, 438, 775
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.