Prupe.1G202200_v2.0.a1

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
20044007 .. 20045800
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G202200.1

Sequence Viewer

Length: 783 bp
ATGGGTAGAGTCATCAGAGCTCAGCGTAAAGGTGCGGGGTCGGTCTTCAAGTCCCACACCCACCACCGCAAGGGTCCAGCCCGGTTCCGCAGTCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGAGATAATCCACGACCCGGGTCGCGGAGCCCCGCTCGCCCGAGTCAGCTTCCGCCATCCTTTCCGATACAAAAAGCAGAACGAGCTCTTCGTCGCCGCTGAGGGCATCTACACTGGCCAGTTCATCTACTGTGGGAAGAAGGCCAATCTGGTCGTGGGCAATGTGTTGCCTCTCAGATCGATCCCGGAGGGAGCTGTCGTCTGCAACGTCGAGCACCATGTTGGTGACCGTGGAGTCCTTGCTAGGGCTTCTGGTGATTACGCTGTTGTTATCAGCCACAACCCTGATAACGATACCTCCAGGATCAAGCTTCCTTCTGGTGCGAAGAAGATTGTGCCAAGTGGTTGCAGGGCAATGATTGGGCAGGTTGCTGGCGGCGGTAGGACTGAAAAGCCAATGCTCAAGGCTGGTAATGCATACCACAAATTCAGAGTGAAGAGGAACTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGACATGCAAGTACAGTCAGGCGTGATGCTCCTCCTGGCCAGAAGGTCGGTCTTATTGCTGCAAGGAGAACAGGAAGACTTAGAGGACAAGCTGCTGCCACTGCCTCCAAGGCTGACAAGGCTTAA

Protein Analysis

261

Amino Acids

28.1

Weight (kDa)

10.89

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 493
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 1 cut(s) 162
AciI CCGC 9 cut(s) 35, 67, 88, 162, 170, 190, 234, 513, 516
AclWI GGATC 2 cut(s) 313, 449
AcoI YGGCCR 2 cut(s) 253, 694
AcsI RAATTY 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 5 cut(s) 70, 154, 161, 382, 635
AgsI TTSAA 1 cut(s) 49
AjnI CCWGG 2 cut(s) 437, 691
AluBI AGCT 6 cut(s) 20, 186, 223, 332, 448, 749
AluI AGCT 6 cut(s) 20, 186, 223, 332, 448, 749
Alw21I GWGCWC 3 cut(s) 22, 225, 354
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 313, 449
Ama87I CYCGRG 2 cut(s) 154, 177
AoxI GGCC 4 cut(s) 253, 279, 587, 694
ApeKI GCWGC 3 cut(s) 716, 749, 752
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 4 cut(s) 82, 155, 156, 323
AsuHPI GGTGA 3 cut(s) 127, 374, 404
AvaI CYCGRG 2 cut(s) 154, 177
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 591
BalI TGGCCA 2 cut(s) 255, 696
BanII GRGCYC 3 cut(s) 22, 169, 225
BbsI GAAGAC 2 cut(s) 37, 739
Bbv12I GWGCWC 3 cut(s) 22, 225, 354
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 703, 736, 739
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 439, 693
BcnI CCSGG 4 cut(s) 82, 155, 156, 323
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 493
BglI GCCNNNNNGGC 1 cut(s) 767
BisI GCNGC 5 cut(s) 234, 514, 717, 750, 753
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 5 cut(s) 235, 515, 718, 751, 754
Bme1390I CCNGG 6 cut(s) 82, 155, 156, 323, 439, 693
Bme18I GGWCC 1 cut(s) 74
BmeT110I CYCGRG 2 cut(s) 154, 177
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 3 cut(s) 75, 86, 166
BmrFI CCNGG 6 cut(s) 82, 155, 156, 323, 439, 693
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 3 cut(s) 252, 634, 673
BmuI ACTGGG 1 cut(s) 611
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 37, 739
BplI GAGNNNNNCTC 2 cut(s) 156, 188
BpmI CTGGAG 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 107, 524
BpuMI CCSGG 4 cut(s) 82, 155, 156, 323
Bsa29I ATCGAT 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 154, 367, 765
BsaXI ACNNNNNCTCC 4 cut(s) 321, 351, 419, 449
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 154, 161, 382, 635
Bse1I ACTGG 3 cut(s) 256, 256, 617
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 2 cut(s) 304, 498
BseBI CCWGG 2 cut(s) 439, 693
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 154, 367, 765
BseGI GGATG 2 cut(s) 193, 625
BseLI CCNNNNNNNGG 5 cut(s) 70, 154, 161, 382, 635
BseMI GCAATG 2 cut(s) 304, 498
BseMII CTCAG 3 cut(s) 35, 228, 325
BseNI ACTGG 3 cut(s) 256, 256, 617
BseRI GAGGAG 2 cut(s) 651, 678
BseXI GCAGC 3 cut(s) 703, 736, 739
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 4 cut(s) 255, 281, 589, 696
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 3 cut(s) 22, 225, 354
BsiHKCI CYCGRG 2 cut(s) 154, 177
BsiSI CCGG 3 cut(s) 82, 155, 323
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 5 cut(s) 70, 154, 161, 382, 635
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 4 cut(s) 255, 281, 589, 696
BsoBI CYCGRG 2 cut(s) 154, 177
Bsp1286I GDGCHC 4 cut(s) 22, 169, 225, 354
Bsp143I GATC 3 cut(s) 314, 318, 441
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 9 cut(s) 35, 67, 88, 162, 170, 190, 234, 513, 516
BspANI GGCC 4 cut(s) 255, 281, 589, 696
BspCNI CTCAG 3 cut(s) 34, 229, 324
BspDI ATCGAT 1 cut(s) 317
BspFNI CGCG 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 75, 86, 166
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 2 cut(s) 313, 449
BspQI GCTCTTC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 304, 498
BsrI ACTGG 3 cut(s) 256, 256, 617
BssECI CCNNGG 3 cut(s) 154, 367, 765
BssMI GATC 3 cut(s) 314, 318, 441
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 2 cut(s) 439, 693
Bst4CI ACNGT 3 cut(s) 269, 368, 673
Bst6I CTCTTC 2 cut(s) 230, 569
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 107, 174, 511, 587
BstDEI CTNAG 5 cut(s) 21, 237, 311, 591, 737
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 2 cut(s) 362, 641
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 2 cut(s) 193, 625
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 317, 321, 444
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 3 cut(s) 314, 318, 441
BstMWI GCNNNNNNNGC 6 cut(s) 173, 220, 551, 758, 767, 776
BstNI CCWGG 2 cut(s) 439, 693
BstNSI RCATGY 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 156
BstPI GGTNACC 2 cut(s) 362, 641
BstSCI CCNGG 6 cut(s) 80, 153, 154, 321, 437, 691
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 3 cut(s) 703, 736, 739
BstV2I GAAGAC 2 cut(s) 37, 739
BstXI CCANNNNNNTGG 1 cut(s) 656
Bsu15I ATCGAT 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 4 cut(s) 255, 281, 589, 696
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 193, 625
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 249, 756
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 4 cut(s) 107, 174, 511, 587
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 1 cut(s) 74
Cfr9I CCCGGG 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 317
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 669
CviAII CATG 2 cut(s) 356, 662
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 5 cut(s) 21, 237, 311, 591, 737
DpnI GATC 3 cut(s) 316, 320, 443
DpnII GATC 3 cut(s) 314, 318, 441
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 2 cut(s) 253, 694
Eam1104I CTCTTC 2 cut(s) 230, 569
EarI CTCTTC 2 cut(s) 230, 569
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 20, 223
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 3 cut(s) 22, 169, 225
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 2 cut(s) 20, 223
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 2 cut(s) 154, 177
Eco91I GGTNACC 2 cut(s) 362, 641
EcoICRI GAGCTC 2 cut(s) 20, 223
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO65I GGTNACC 2 cut(s) 362, 641
EcoRII CCWGG 2 cut(s) 437, 691
EcoT14I CCWWGG 1 cut(s) 765
EcoT22I ATGCAT 1 cut(s) 556
EcoT38I GRGCYC 3 cut(s) 22, 169, 225
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 2 cut(s) 359, 665
FaiI YATR 4 cut(s) 357, 556, 611, 663
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 355, 661
FauI CCCGC 2 cut(s) 28, 177
Fnu4HI GCNGC 5 cut(s) 234, 514, 717, 750, 753
FokI GGATG 2 cut(s) 180, 612
FriOI GRGCYC 3 cut(s) 22, 169, 225
Fsp4HI GCNGC 5 cut(s) 234, 514, 717, 750, 753
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 110
GluI GCNGC 5 cut(s) 234, 514, 717, 750, 753
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 4 cut(s) 255, 281, 589, 696
HapII CCGG 3 cut(s) 82, 155, 323
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 359, 665
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 3 cut(s) 9, 180, 372
HpaII CCGG 3 cut(s) 82, 155, 323
HphI GGTGA 3 cut(s) 127, 374, 404
Hpy188I TCNGA 4 cut(s) 17, 203, 314, 569
Hpy188III TCNNGA 1 cut(s) 95
Hpy99I CGWCG 3 cut(s) 134, 233, 350
HpyAV CCTTC 3 cut(s) 271, 462, 694
HpyCH4III ACNGT 3 cut(s) 269, 368, 673
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 342, 486, 554, 665, 719
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 220, 551, 758, 767, 776
HpyF3I CTNAG 5 cut(s) 21, 237, 311, 591, 737
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 359, 665
HspAI GCGC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 314, 318, 441
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 3 cut(s) 164, 329, 691
Lsp1109I GCAGC 3 cut(s) 703, 736, 739
LweI GCATC 3 cut(s) 252, 634, 673
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 3 cut(s) 133, 362, 641
MalI GATC 3 cut(s) 316, 320, 443
MbiI CCGCTC 1 cut(s) 172
MboI GATC 3 cut(s) 314, 318, 441
MboII GAAGA 7 cut(s) 37, 217, 286, 475, 478, 586, 744
MhlI GDGCHC 4 cut(s) 22, 169, 225, 354
MlsI TGGCCA 2 cut(s) 255, 696
MluCI AATT 1 cut(s) 563
MluNI TGGCCA 2 cut(s) 255, 696
MlyI GAGTC 3 cut(s) 18, 189, 381
Mox20I TGGCCA 2 cut(s) 255, 696
Mph1103I ATGCAT 1 cut(s) 556
MscI TGGCCA 2 cut(s) 255, 696
MseI TTAA 1 cut(s) 781
MslI CAYNNNNRTG 1 cut(s) 360
Msp20I TGGCCA 2 cut(s) 255, 696
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 3 cut(s) 82, 155, 323
MspR9I CCNGG 6 cut(s) 82, 155, 156, 323, 439, 693
MvaI CCWGG 2 cut(s) 439, 693
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 6 cut(s) 173, 220, 551, 758, 767, 776
NciI CCSGG 4 cut(s) 82, 155, 156, 323
NdeII GATC 3 cut(s) 314, 318, 441
NlaIII CATG 2 cut(s) 359, 665
NlaIV GGNNCC 3 cut(s) 75, 86, 166
NmuCI GTSAC 2 cut(s) 133, 362
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 665
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 3 cut(s) 102, 225, 342
PfoI TCCNGGA 2 cut(s) 321, 437
PkrI GCNGC 5 cut(s) 235, 515, 718, 751, 754
PleI GAGTC 3 cut(s) 17, 188, 380
PpsI GAGTC 3 cut(s) 17, 188, 380
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 2 cut(s) 22, 225
Psp6I CCWGG 2 cut(s) 437, 691
PspEI GGTNACC 2 cut(s) 362, 641
PspGI CCWGG 2 cut(s) 437, 691
PspN4I GGNNCC 3 cut(s) 75, 86, 166
PspPI GGNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 2 cut(s) 22, 225
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 781
SatI GCNGC 5 cut(s) 234, 514, 717, 750, 753
Sau3AI GATC 3 cut(s) 314, 318, 441
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 3 cut(s) 18, 189, 381
ScrFI CCNGG 6 cut(s) 82, 155, 156, 323, 439, 693
SduI GDGCHC 4 cut(s) 22, 169, 225, 354
SfaNI GCATC 3 cut(s) 252, 634, 673
SinI GGWCC 1 cut(s) 74
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 122, 539
SmoI CTYRAG 2 cut(s) 122, 539
Sse9I AATT 1 cut(s) 563
SsiI CCGC 9 cut(s) 35, 67, 88, 162, 170, 190, 234, 513, 516
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 2 cut(s) 22, 225
StyD4I CCNGG 6 cut(s) 80, 153, 154, 321, 437, 691
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 3 cut(s) 269, 368, 673
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 96, 317, 348
TaqII GACCGA 2 cut(s) 31, 695
TasI AATT 1 cut(s) 563
TatI WGTACW 1 cut(s) 668
TauI GCSGC 2 cut(s) 236, 516
Tru1I TTAA 1 cut(s) 781
Tru9I TTAA 1 cut(s) 781
TscAI CASTG 2 cut(s) 256, 763
TseFI GTSAC 2 cut(s) 133, 362
TseI GCWGC 3 cut(s) 716, 749, 752
Tsp45I GTSAC 2 cut(s) 133, 362
TspDTI ATGAA 2 cut(s) 250, 626
TspGWI ACGGA 1 cut(s) 648
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 2 cut(s) 256, 763
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 633
XapI RAATTY 1 cut(s) 563
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 2 cut(s) 289, 653
XmaI CCCGGG 1 cut(s) 154
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.