Prupe.4G101600_v2.0.a1

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
5190308 .. 5192095
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G101600.1

Sequence Viewer

Length: 783 bp
ATGGGAAGAGTCATCAGAGCTCAGCGTAAGGGTGCCGGGTCCGTCTTCAAGTCCCACACTCACCACCGCAAGGGTCCTGCCCGGTTCCGGAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACTGAGATTATCCACGACCCGGGTCGTGGTGCCCCGCTCGCCCGAGTCAGCTTCCGCCATCCTTTCCGATACAAGAAGCAGAACGAGCTCTTCGTCGCCGCTGAGGGTATCTACACTGGCCAGTTCATCTACTGTGGGAAGAAGGCCAATCTGGTCGTCGGAAATGTTTTGCCTCTCAGATCGATCCCAGAAGGAGCTGTAGTCTGCAACGTCGAGCACCATGTTGGTGACCGTGGAACCCTTGCTAGGGCTTCTGGTGACTACGCTGTTGTTATCAGCCACAACCCTGATAACGATACCTCCAGGATCAAGCTTCCTTCTGGTGCGAAGAAGATTGTGCCAAGTGGCTGCAGGGCAATGATTGGGCAAGTTGCTGGCGGTGGTAGGACTGAAAAGCCAATGCTCAAGGCTGGTAATGCGTACCACAAATTCAGAGTGAAGAGGAACTGCTGGCCAAAGGTTCGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGACATGCAAGTACAGTCAGACGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCAAGGAGAACAGGAAGACTTAGAGGACAAGCTGCTGCCACTGCCTCCAAGGCTGACAAGGCTTAA

Protein Analysis

261

Amino Acids

28.1

Weight (kDa)

10.89

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 164
AccBSI CCGCTC 1 cut(s) 172
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 5 cut(s) 67, 170, 190, 234, 513
AclWI GGATC 2 cut(s) 313, 449
AcoI YGGCCR 3 cut(s) 253, 587, 694
AcsI RAATTY 1 cut(s) 563
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 2 cut(s) 557, 670
AfiI CCNNNNNNNGG 7 cut(s) 70, 87, 154, 161, 381, 382, 635
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 680
AjnI CCWGG 2 cut(s) 437, 691
AluBI AGCT 6 cut(s) 20, 186, 223, 332, 448, 749
AluI AGCT 6 cut(s) 20, 186, 223, 332, 448, 749
Alw21I GWGCWC 3 cut(s) 22, 225, 354
Alw26I GTCTC 1 cut(s) 713
AlwI GGATC 2 cut(s) 313, 449
Ama87I CYCGRG 2 cut(s) 154, 177
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 4 cut(s) 253, 279, 587, 694
ApeKI GCWGC 4 cut(s) 483, 716, 749, 752
ApoI RAATTY 1 cut(s) 563
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 39, 74
AsuC2I CCSGG 4 cut(s) 37, 82, 155, 156
AsuHPI GGTGA 3 cut(s) 53, 374, 404
AvaI CYCGRG 2 cut(s) 154, 177
AvaII GGWCC 2 cut(s) 39, 74
BaeGI GKGCMC 1 cut(s) 169
BalI TGGCCA 3 cut(s) 255, 589, 696
BanI GGYRCC 2 cut(s) 32, 164
BanII GRGCYC 2 cut(s) 22, 225
BbsI GAAGAC 2 cut(s) 37, 739
Bbv12I GWGCWC 3 cut(s) 22, 225, 354
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 470, 703, 736, 739
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 130
BciT130I CCWGG 2 cut(s) 439, 693
BcnI CCSGG 4 cut(s) 37, 82, 155, 156
BcoDI GTCTC 1 cut(s) 713
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 2 cut(s) 333, 484
BglI GCCNNNNNGGC 1 cut(s) 767
BisI GCNGC 5 cut(s) 234, 484, 717, 750, 753
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 5 cut(s) 235, 485, 718, 751, 754
Bme1390I CCNGG 6 cut(s) 37, 82, 155, 156, 439, 693
Bme18I GGWCC 2 cut(s) 39, 74
BmeT110I CYCGRG 2 cut(s) 154, 177
BmgBI CACGTC 1 cut(s) 680
BmgT120I GGNCC 2 cut(s) 39, 74
BmiI GGNNCC 7 cut(s) 34, 40, 75, 86, 92, 166, 373
BmrFI CCNGG 6 cut(s) 37, 82, 155, 156, 439, 693
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 2 cut(s) 634, 673
BmuI ACTGGG 1 cut(s) 611
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 2 cut(s) 37, 739
BpmI CTGGAG 1 cut(s) 421
Bpu10I CCTNAGC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 107, 524
BpuMI CCSGG 4 cut(s) 37, 82, 155, 156
Bsa29I ATCGAT 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 3 cut(s) 154, 367, 765
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 4 cut(s) 321, 351, 419, 449
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 87, 154, 161, 381, 382, 635
Bse1I ACTGG 3 cut(s) 256, 256, 617
Bse3DI GCAATG 2 cut(s) 498, 711
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 2 cut(s) 439, 693
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 154, 367, 765
BseGI GGATG 2 cut(s) 193, 625
BseLI CCNNNNNNNGG 7 cut(s) 70, 87, 154, 161, 381, 382, 635
BseMI GCAATG 2 cut(s) 498, 711
BseMII CTCAG 4 cut(s) 35, 129, 228, 325
BseNI ACTGG 3 cut(s) 256, 256, 617
BseRI GAGGAG 2 cut(s) 651, 678
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 4 cut(s) 470, 703, 736, 739
BshFI GGCC 4 cut(s) 255, 281, 589, 696
BshNI GGYRCC 2 cut(s) 32, 164
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 3 cut(s) 22, 225, 354
BsiHKCI CYCGRG 2 cut(s) 154, 177
BsiSI CCGG 4 cut(s) 36, 82, 88, 155
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 7 cut(s) 70, 87, 154, 161, 381, 382, 635
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 4 cut(s) 255, 281, 589, 696
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 2 cut(s) 154, 177
Bsp1286I GDGCHC 4 cut(s) 22, 169, 225, 354
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 3 cut(s) 314, 318, 441
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 5 cut(s) 67, 170, 190, 234, 513
BspANI GGCC 4 cut(s) 255, 281, 589, 696
BspCNI CTCAG 4 cut(s) 34, 130, 229, 324
BspDI ATCGAT 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 87
BspLI GGNNCC 7 cut(s) 34, 40, 75, 86, 92, 166, 373
BspMAI CTGCAG 1 cut(s) 488
BspPI GGATC 2 cut(s) 313, 449
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 32, 164
BspTNI GGTCTC 1 cut(s) 713
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 498, 711
BsrI ACTGG 3 cut(s) 256, 256, 617
BssECI CCNNGG 3 cut(s) 154, 367, 765
BssMI GATC 3 cut(s) 314, 318, 441
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 2 cut(s) 439, 693
Bst4CI ACNGT 3 cut(s) 269, 368, 673
Bst6I CTCTTC 2 cut(s) 230, 569
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 4 cut(s) 107, 174, 511, 587
BstDEI CTNAG 5 cut(s) 21, 138, 237, 311, 737
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 2 cut(s) 362, 641
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 2 cut(s) 193, 625
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 317, 321, 444
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 3 cut(s) 314, 318, 441
BstMWI GCNNNNNNNGC 6 cut(s) 173, 220, 551, 758, 767, 776
BstNI CCWGG 2 cut(s) 439, 693
BstNSI RCATGY 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 156
BstPI GGTNACC 2 cut(s) 362, 641
BstSCI CCNGG 6 cut(s) 35, 80, 153, 154, 437, 691
BstSFI CTRYAG 2 cut(s) 333, 484
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 470, 703, 736, 739
BstV2I GAAGAC 2 cut(s) 37, 739
BstXI CCANNNNNNTGG 2 cut(s) 656, 704
Bsu15I ATCGAT 1 cut(s) 317
BsuRI GGCC 4 cut(s) 255, 281, 589, 696
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 367
BtrI CACGTC 1 cut(s) 680
BtsCI GGATG 2 cut(s) 193, 625
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 135, 249, 756
Cac8I GCNNGC 4 cut(s) 107, 174, 511, 587
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 2 cut(s) 39, 74
Cfr9I CCCGGG 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 317
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 556, 669
CviAII CATG 2 cut(s) 356, 662
CviQI GTAC 2 cut(s) 556, 669
DdeI CTNAG 5 cut(s) 21, 138, 237, 311, 737
DpnI GATC 3 cut(s) 316, 320, 443
DpnII GATC 3 cut(s) 314, 318, 441
EaeI YGGCCR 3 cut(s) 253, 587, 694
Eam1104I CTCTTC 2 cut(s) 230, 569
EarI CTCTTC 2 cut(s) 230, 569
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 20, 223
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 2 cut(s) 22, 225
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 39, 74
Eco53kI GAGCTC 2 cut(s) 20, 223
Eco88I CYCGRG 2 cut(s) 154, 177
Eco91I GGTNACC 2 cut(s) 362, 641
EcoICRI GAGCTC 2 cut(s) 20, 223
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 74
EcoO65I GGTNACC 2 cut(s) 362, 641
EcoRII CCWGG 2 cut(s) 437, 691
EcoT14I CCWWGG 1 cut(s) 765
EcoT38I GRGCYC 2 cut(s) 22, 225
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 2 cut(s) 359, 665
FaiI YATR 4 cut(s) 357, 611, 654, 663
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 355, 661
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 5 cut(s) 234, 484, 717, 750, 753
FokI GGATG 2 cut(s) 180, 612
FriOI GRGCYC 2 cut(s) 22, 225
Fsp4HI GCNGC 5 cut(s) 234, 484, 717, 750, 753
FspBI CTAG 1 cut(s) 381
GlaI GCGC 1 cut(s) 110
GluI GCNGC 5 cut(s) 234, 484, 717, 750, 753
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 4 cut(s) 255, 281, 589, 696
HapII CCGG 4 cut(s) 36, 82, 88, 155
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 359, 665
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 9, 180
HpaII CCGG 4 cut(s) 36, 82, 88, 155
HphI GGTGA 3 cut(s) 53, 374, 404
Hpy188I TCNGA 6 cut(s) 17, 203, 296, 314, 569, 677
Hpy188III TCNNGA 1 cut(s) 88
Hpy99I CGWCG 4 cut(s) 134, 233, 296, 350
HpyAV CCTTC 4 cut(s) 271, 320, 462, 694
HpyCH4III ACNGT 3 cut(s) 269, 368, 673
HpyCH4IV ACGT 2 cut(s) 345, 679
HpyCH4V TGCA 4 cut(s) 342, 486, 665, 719
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 220, 551, 758, 767, 776
HpyF3I CTNAG 5 cut(s) 21, 138, 237, 311, 737
HpySE526I ACGT 2 cut(s) 345, 679
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 359, 665
HspAI GCGC 1 cut(s) 109
Kpn2I TCCGGA 1 cut(s) 87
Kzo9I GATC 3 cut(s) 314, 318, 441
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 3 cut(s) 90, 329, 691
Lsp1109I GCAGC 4 cut(s) 470, 703, 736, 739
LweI GCATC 2 cut(s) 634, 673
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 345, 679
MaeIII GTNAC 4 cut(s) 133, 362, 392, 641
MalI GATC 3 cut(s) 316, 320, 443
MbiI CCGCTC 1 cut(s) 172
MboI GATC 3 cut(s) 314, 318, 441
MboII GAAGA 8 cut(s) 18, 37, 217, 286, 475, 478, 586, 744
MhlI GDGCHC 4 cut(s) 22, 169, 225, 354
MlsI TGGCCA 3 cut(s) 255, 589, 696
MluCI AATT 1 cut(s) 563
MluNI TGGCCA 3 cut(s) 255, 589, 696
MlyI GAGTC 2 cut(s) 18, 189
MmeI TCCRAC 1 cut(s) 274
Mox20I TGGCCA 3 cut(s) 255, 589, 696
MroI TCCGGA 1 cut(s) 87
MscI TGGCCA 3 cut(s) 255, 589, 696
MseI TTAA 1 cut(s) 781
MslI CAYNNNNRTG 1 cut(s) 360
Msp20I TGGCCA 3 cut(s) 255, 589, 696
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 4 cut(s) 36, 82, 88, 155
MspR9I CCNGG 6 cut(s) 37, 82, 155, 156, 439, 693
MvaI CCWGG 2 cut(s) 439, 693
MwoI GCNNNNNNNGC 6 cut(s) 173, 220, 551, 758, 767, 776
NciI CCSGG 4 cut(s) 37, 82, 155, 156
NdeII GATC 3 cut(s) 314, 318, 441
NlaIII CATG 2 cut(s) 359, 665
NlaIV GGNNCC 7 cut(s) 34, 40, 75, 86, 92, 166, 373
NmuCI GTSAC 3 cut(s) 133, 362, 392
NspI RCATGY 1 cut(s) 665
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 225
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 5 cut(s) 235, 485, 718, 751, 754
PleI GAGTC 2 cut(s) 17, 188
PpsI GAGTC 2 cut(s) 17, 188
PpuMI RGGWCCY 1 cut(s) 74
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 2 cut(s) 22, 225
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 437, 691
PspEI GGTNACC 2 cut(s) 362, 641
PspGI CCWGG 2 cut(s) 437, 691
PspN4I GGNNCC 7 cut(s) 34, 40, 75, 86, 92, 166, 373
PspPI GGNCC 2 cut(s) 39, 74
PspPPI RGGWCCY 1 cut(s) 74
PstI CTGCAG 1 cut(s) 488
RsaI GTAC 2 cut(s) 557, 670
RsaNI GTAC 2 cut(s) 556, 669
RseI CAYNNNNRTG 1 cut(s) 360
SacI GAGCTC 2 cut(s) 22, 225
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 781
SatI GCNGC 5 cut(s) 234, 484, 717, 750, 753
Sau3AI GATC 3 cut(s) 314, 318, 441
Sau96I GGNCC 2 cut(s) 39, 74
SchI GAGTC 2 cut(s) 18, 189
ScrFI CCNGG 6 cut(s) 37, 82, 155, 156, 439, 693
SduI GDGCHC 4 cut(s) 22, 169, 225, 354
SfaNI GCATC 2 cut(s) 634, 673
SfcI CTRYAG 2 cut(s) 333, 484
SinI GGWCC 2 cut(s) 39, 74
SmaI CCCGGG 1 cut(s) 156
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 122, 539
SmoI CTYRAG 2 cut(s) 122, 539
Sse9I AATT 1 cut(s) 563
SsiI CCGC 5 cut(s) 67, 170, 190, 234, 513
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 2 cut(s) 22, 225
StyD4I CCNGG 6 cut(s) 35, 80, 153, 154, 437, 691
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 3 cut(s) 269, 368, 673
TaiI ACGT 2 cut(s) 348, 682
TaqI TCGA 3 cut(s) 96, 317, 348
TasI AATT 1 cut(s) 563
TatI WGTACW 1 cut(s) 668
TauI GCSGC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 781
Tru9I TTAA 1 cut(s) 781
TscAI CASTG 3 cut(s) 142, 256, 763
TseFI GTSAC 3 cut(s) 133, 362, 392
TseI GCWGC 4 cut(s) 483, 716, 749, 752
Tsp45I GTSAC 3 cut(s) 133, 362, 392
TspDTI ATGAA 2 cut(s) 250, 626
TspGWI ACGGA 2 cut(s) 31, 648
TspMI CCCGGG 1 cut(s) 154
TspRI CASTG 3 cut(s) 142, 256, 763
VpaK11BI GGWCC 2 cut(s) 39, 74
XagI CCTNNNNNAGG 1 cut(s) 633
XapI RAATTY 1 cut(s) 563
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XmaI CCCGGG 1 cut(s) 154
XspI CTAG 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.