Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003560

Physical Location & Seq

Genomic Coordinates Reverse (-)

19016519 .. 19017547

Gene Structure 1029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTCGTGTGATTAGGGCACAGCGTAAAGGTGCGGCTGGTTCCGTTTTCAAGTCCCACACCCACCACCGCAAGGGTCCAGCTAAGTTCCGGAGCCTCGATTACGGAGAGCGAAACGGTTACCTCAAAGGATTGGTGACCGAAATCATCCACGACCCAGGCCGTGGTGCTCCTCTCGCTCGTGTCGCGTTCCGTCATCCTTTCCGCTACATGAAGCAGAAGGAACTGTTCGTAGCCGCCGAAGGTATGTACACCGGACAATACCTCTACTGTGGTAAGAAGGCTAATCTTATGGTCGGTAACGTTCTTCCCCTTGGATCAATCCCTGAGGGAGCTGTTATCTGTAACGTTGAGCTCCATGTCGGTGACCGTGGTGCTCTCGCTAGGGCTTCTGGTGATTACGCCATCGTAATTGCTCACAATCCTGAAAGCAACACCACTAGGGTTAAGCTTCCTTCTGGATCGAAGAAGATTTTGCCAAGTGCGTGCAGAGCCATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAGAAGCCACTTCTCAAGGCTGGAAATGCATACCACAAGTACAAAGCGAAGAGGAACTGTTGGCCTGTTGTACGTGGTGTTGCGATGAACCCAGTGGAACATCCCCACGGAGGAGGAAACCACCAGCACATTGGTCACGCCAGTACGGTCAGGCGTGATAAATCTGCTGGTGCTAAGGTTGGTCAAATTGCTGCAAGGAGAACTGGTCGTCGTAGAGGTGCAGCTGCCACATTAGCAGCCAAGGCAGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

260

Amino Acids

28.0

Weight (kDa)

10.54

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	2 - 91	1e-22	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	99 - 223	2.8e-46	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18020 AT3G51190 AT4G36130
fragaria_vesca	FvH4_3g11370 FvH4_3g11370 FvH4_3g19850
malus_domestica	MD05G1264000.v1.1 MD10G1241900.v1.1
prunus_persica	Prupe.1G202200_v2.0.a1 Prupe.4G101600_v2.0.a1
pyrus_communis	pycom05g24810 pycom10g20260 pycom10g20270
rosa_chinensis	RchiOBHm_Chr5g0018321 RchiOBHm_Chr5g0033291
rosa_laevigata	RLG00000032351 RLG00000033468
rosa_multiflora	Rmu_co8428655.1_g000001 Rmu_sc0002206.1_g000007 Rmu_sc0005702.1_g000002 Rmu_sc0009715.1_g000002 Rmu_sc0011919.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046690
rosa_rugosa	Rorug05G0041300 Rorug05G0139200
rosa_samantha	Rh5AG134500 Rh5AG230600 Rh5BG133300 Rh5BG231600 Rh5CG145000 Rh5CG260300 Rh5DG134700 Rh5DG236700
rosa_wichuraiana	Rw5G011760 Rw5G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	503
Acc36I	ACCTGC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccII	CGCG	1 cut(s)	188
AccIII	TCCGGA	1 cut(s)	90
AciI	CCGC	4 cut(s)	35, 70, 205, 237
AclI	AACGTT	2 cut(s)	303, 348
AclWI	GGATC	2 cut(s)	325, 469
AfaI	GTAC	4 cut(s)	251, 569, 600, 673
AfiI	CCNNNNNNNGG	4 cut(s)	73, 164, 501, 638
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	83, 335, 355, 451, 752
AluI	AGCT	5 cut(s)	83, 335, 355, 451, 752
Alw21I	GWGCWC	3 cut(s)	172, 357, 379
AlwI	GGATC	2 cut(s)	325, 469
Aor13HI	TCCGGA	1 cut(s)	90
AoxI	GGCC	2 cut(s)	160, 590
ApeKI	GCWGC	4 cut(s)	719, 749, 752, 764
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	3 cut(s)	148, 377, 407
AvaII	GGWCC	1 cut(s)	77
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	3 cut(s)	172, 357, 379
BbvI	GCAGC	4 cut(s)	706, 739, 761, 776
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	147
BciT130I	CCWGG	1 cut(s)	159
BfaI	CTAG	3 cut(s)	384, 441, 781
BfuAI	ACCTGC	1 cut(s)	503
BisI	GCNGC	6 cut(s)	36, 237, 720, 750, 753, 765
BlsI	GCNGC	6 cut(s)	37, 238, 721, 751, 754, 766
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	3 cut(s)	43, 78, 95
BmrFI	CCNGG	1 cut(s)	159
BmrI	ACTGGG	1 cut(s)	614
BmuI	ACTGGG	1 cut(s)	614
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	602
BsaJI	CCNNGG	6 cut(s)	157, 163, 313, 370, 634, 768
BsaWI	WCCGGW	2 cut(s)	90, 254
BsaXI	ACNNNNNCTCC	2 cut(s)	718, 748
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 164, 501, 638
Bse1I	ACTGG	3 cut(s)	620, 669, 736
Bse21I	CCTNAGG	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	6 cut(s)	157, 163, 313, 370, 634, 768
BseGI	GGATG	3 cut(s)	147, 196, 628
BseLI	CCNNNNNNNGG	4 cut(s)	73, 164, 501, 638
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	620, 669, 736
BseRI	GAGGAG	2 cut(s)	162, 654
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	4 cut(s)	706, 739, 761, 776
BsgI	GTGCAG	2 cut(s)	508, 768
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	162, 592
BsiHKAI	GWGCWC	3 cut(s)	172, 357, 379
BsiSI	CCGG	2 cut(s)	91, 255
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	4 cut(s)	73, 164, 501, 638
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	162, 592
Bsp1286I	GDGCHC	4 cut(s)	22, 172, 357, 379
Bsp13I	TCCGGA	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	317, 461
BspACI	CCGC	4 cut(s)	35, 70, 205, 237
BspANI	GGCC	2 cut(s)	162, 592
BspCNI	CTCAG	1 cut(s)	319
BspEI	TCCGGA	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	43, 78, 95
BspMI	ACCTGC	1 cut(s)	503
BspPI	GGATC	2 cut(s)	325, 469
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	620, 669, 736
BssECI	CCNNGG	6 cut(s)	157, 163, 313, 370, 634, 768
BssMI	GATC	2 cut(s)	317, 461
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	2 cut(s)	313, 768
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	6 cut(s)	119, 228, 272, 371, 587, 676
Bst6I	CTCTTC	1 cut(s)	572
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	602
BstC8I	GCNNGC	1 cut(s)	487
BstDEI	CTNAG	3 cut(s)	84, 327, 702
BstDSI	CCRYGG	3 cut(s)	163, 370, 634
BstEII	GGTNACC	3 cut(s)	119, 136, 365
BstF5I	GGATG	3 cut(s)	147, 196, 628
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	320, 464
BstMBI	GATC	2 cut(s)	317, 461
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 185, 491, 554, 761, 770
BstNI	CCWGG	1 cut(s)	159
BstPI	GGTNACC	3 cut(s)	119, 136, 365
BstSCI	CCNGG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	22
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	706, 739, 761, 776
BstXI	CCANNNNNNTGG	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	162, 592
BtgI	CCRYGG	3 cut(s)	163, 370, 634
BtgZI	GCGATG	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	147, 196, 628
BtsIMutI	CAGTG	1 cut(s)	627
BveI	ACCTGC	1 cut(s)	503
Cac8I	GCNNGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	4 cut(s)	250, 568, 599, 672
CviAII	CATG	3 cut(s)	211, 359, 496
CviQI	GTAC	4 cut(s)	250, 568, 599, 672
DdeI	CTNAG	3 cut(s)	84, 327, 702
DpnI	GATC	2 cut(s)	319, 463
DpnII	GATC	2 cut(s)	317, 461
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Ecl136II	GAGCTC	1 cut(s)	355
Eco130I	CCWWGG	2 cut(s)	313, 768
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	355
Eco81I	CCTNAGG	1 cut(s)	327
Eco91I	GGTNACC	3 cut(s)	119, 136, 365
EcoICRI	GAGCTC	1 cut(s)	355
EcoO65I	GGTNACC	3 cut(s)	119, 136, 365
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	313, 768
EcoT22I	ATGCAT	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	2 cut(s)	313, 768
FaeI	CATG	3 cut(s)	214, 362, 499
FaiI	YATR	6 cut(s)	212, 248, 293, 360, 497, 559
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	3 cut(s)	210, 358, 495
Fnu4HI	GCNGC	6 cut(s)	36, 237, 720, 750, 753, 765
FokI	GGATG	3 cut(s)	134, 183, 615
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	6 cut(s)	36, 237, 720, 750, 753, 765
FspBI	CTAG	3 cut(s)	384, 441, 781
GluI	GCNGC	6 cut(s)	36, 237, 720, 750, 753, 765
HaeIII	GGCC	2 cut(s)	162, 592
HapII	CCGG	2 cut(s)	91, 255
Hin1II	CATG	3 cut(s)	214, 362, 499
HindIII	AAGCTT	1 cut(s)	449
HpaII	CCGG	2 cut(s)	91, 255
HphI	GGTGA	3 cut(s)	148, 377, 407
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188III	TCNNGA	3 cut(s)	91, 425, 459
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	4 cut(s)	214, 236, 274, 465
HpyCH4III	ACNGT	6 cut(s)	119, 228, 272, 371, 587, 676
HpyCH4IV	ACGT	3 cut(s)	303, 348, 601
HpyCH4V	TGCA	5 cut(s)	489, 512, 557, 722, 749
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 185, 491, 554, 761, 770
HpyF3I	CTNAG	3 cut(s)	84, 327, 702
HpySE526I	ACGT	3 cut(s)	303, 348, 601
Hsp92II	CATG	3 cut(s)	214, 362, 499
Kpn2I	TCCGGA	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	317, 461
LmnI	GCTCC	4 cut(s)	93, 175, 332, 360
Lsp1109I	GCAGC	4 cut(s)	706, 739, 761, 776
MaeI	CTAG	3 cut(s)	384, 441, 781
MaeII	ACGT	3 cut(s)	303, 348, 601
MaeIII	GTNAC	6 cut(s)	119, 136, 299, 344, 365, 662
MalI	GATC	2 cut(s)	319, 463
MboI	GATC	2 cut(s)	317, 461
MboII	GAAGA	5 cut(s)	299, 478, 481, 534, 589
MhlI	GDGCHC	4 cut(s)	22, 172, 357, 379
MluCI	AATT	2 cut(s)	411, 714
Mph1103I	ATGCAT	1 cut(s)	559
MroI	TCCGGA	1 cut(s)	90
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	752
MspI	CCGG	2 cut(s)	91, 255
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	6 cut(s)	176, 185, 491, 554, 761, 770
NdeII	GATC	2 cut(s)	317, 461
NlaIII	CATG	3 cut(s)	214, 362, 499
NlaIV	GGNNCC	3 cut(s)	43, 78, 95
NmuCI	GTSAC	3 cut(s)	136, 365, 662
NsiI	ATGCAT	1 cut(s)	559
PaqCI	CACCTGC	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	37, 238, 721, 751, 754, 766
Ppu21I	YACGTR	1 cut(s)	602
Psp124BI	GAGCTC	1 cut(s)	357
Psp1406I	AACGTT	2 cut(s)	303, 348
Psp6I	CCWGG	1 cut(s)	157
PspEI	GGTNACC	3 cut(s)	119, 136, 365
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	43, 78, 95
PspPI	GGNCC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	4 cut(s)	251, 569, 600, 673
RsaNI	GTAC	4 cut(s)	250, 568, 599, 672
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	6 cut(s)	36, 237, 720, 750, 753, 765
Sau3AI	GATC	2 cut(s)	317, 461
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	4 cut(s)	22, 172, 357, 379
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	411, 714
SsiI	CCGC	4 cut(s)	35, 70, 205, 237
SspMI	CTAG	3 cut(s)	384, 441, 781
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	313, 768
TaaI	ACNGT	6 cut(s)	119, 228, 272, 371, 587, 676
TaiI	ACGT	3 cut(s)	306, 351, 604
TaqI	TCGA	2 cut(s)	99, 464
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	411, 714
TatI	WGTACW	2 cut(s)	249, 567
TauI	GCSGC	2 cut(s)	38, 239
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	627
TseFI	GTSAC	3 cut(s)	136, 365, 662
TseI	GCWGC	4 cut(s)	719, 749, 752, 764
Tsp45I	GTSAC	3 cut(s)	136, 365, 662
TspDTI	ATGAA	2 cut(s)	227, 629
TspGWI	ACGGA	4 cut(s)	34, 120, 182, 651
TspRI	CASTG	1 cut(s)	627
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XspI	CTAG	3 cut(s)	384, 441, 781
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.