FvH4_3g11370

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
6701292 .. 6703211
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11370.t1

Sequence Viewer

Length: 777 bp
ATGGGACGAGTCATCAGAGCTCAGCGTAAGGGTGCCGGCTCCGTCTTCAAGTCCCACACCCACCACCGCAAGGGCCCCGCCCGCTTCCGCTCCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGACATCATCCACGACCCCGGCCGTGGCGCACCGCTCGCTCGTGTCAGCTTCCGTCATCCTTTCCGCTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCTGAGGGCATTTACACCGGTCAGTTTATTTACTGCGGTAAGAAGGCTAATTTGGTCGTCGGGAATGTTTTGCCGATCAGATCTATCCCCGAGGGAGCCGTCGTCTGCAACGTCGAGCACCACGTCGGCGACCGTGGTACCCTCGCTAGGGCTTCTGGTGATTATGCTGTTGTTATCAGCCACAATCCTGATAACGATACTTCCAGGATCAAGCTTCCATCTGGTGCCAAGAAAATTGTTCCAAGTGGATGCCGTGCTATGATTGGGCAGGTTGCAGGGGGTGGAAGAACAGAGAAGCCTATGCTCAAGGCTGGTAATGCCTACCACAAGTTCAGGGTGAAGAGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAATCCCGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGTCATGCTAGCACAGTCAGGCGTGATGCTCCTCCTGGGCAGAAGGTTGGTCTCATTGCTGCCAGGAGAACTGGTCGTCTCAGAGGACAAGCTGCAGCAACTGCCTCCAAGGAGAAGTAG

Protein Analysis

259

Amino Acids

27.96

Weight (kDa)

10.89

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L2_N PF00181 2 - 90 2.6e-22 Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C PF03947 98 - 224 9.2e-46 Ribosomal Proteins L2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 3 cut(s) 32, 371, 458
AccBSI CCGCTC 2 cut(s) 90, 172
AciI CCGC 8 cut(s) 67, 78, 82, 88, 170, 202, 234, 270
AclWI GGATC 1 cut(s) 449
AcoI YGGCCR 1 cut(s) 157
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 5 cut(s) 70, 161, 381, 382, 635
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 3 cut(s) 437, 691, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 5 cut(s) 20, 186, 223, 448, 749
AluI AGCT 5 cut(s) 20, 186, 223, 448, 749
Alw21I GWGCWC 3 cut(s) 22, 225, 354
Alw26I GTCTC 2 cut(s) 713, 740
AlwI GGATC 1 cut(s) 449
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 3 cut(s) 73, 157, 587
ApaI GGGCCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 716, 749, 752
AsiGI ACCGGT 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 2 cut(s) 111, 167
AspS9I GGNCC 2 cut(s) 73, 74
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 127, 404, 583
AsuNHI GCTAGC 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BanI GGYRCC 3 cut(s) 32, 371, 458
BanII GRGCYC 3 cut(s) 22, 77, 225
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 3 cut(s) 22, 225, 354
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 703, 736, 764
BccI CCATC 1 cut(s) 460
BceAI ACGGC 4 cut(s) 130, 144, 317, 471
BciT130I CCWGG 3 cut(s) 439, 693, 721
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 2 cut(s) 713, 740
BfaI CTAG 2 cut(s) 381, 666
BfmI CTRYAG 1 cut(s) 750
BfuAI ACCTGC 1 cut(s) 493
BglII AGATCT 1 cut(s) 314
BisI GCNGC 4 cut(s) 234, 717, 750, 753
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 4 cut(s) 235, 718, 751, 754
Bme1390I CCNGG 4 cut(s) 156, 439, 693, 721
BmeT110I CYCGRG 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 73, 74
BmiI GGNNCC 7 cut(s) 34, 40, 75, 76, 331, 373, 460
BmrFI CCNGG 4 cut(s) 156, 439, 693, 721
BmsI GCATC 3 cut(s) 473, 634, 673
BmtI GCTAGC 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 37
Bpu10I CCTNAGC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 107, 524
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 6 cut(s) 154, 160, 324, 367, 692, 765
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 321, 351, 715, 745
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 161, 381, 382, 635
Bse118I RCCGGY 2 cut(s) 35, 251
Bse1I ACTGG 1 cut(s) 733
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 3 cut(s) 439, 693, 721
BseDI CCNNGG 6 cut(s) 154, 160, 324, 367, 692, 765
BseGI GGATG 4 cut(s) 144, 193, 488, 625
BseLI CCNNNNNNNGG 5 cut(s) 70, 161, 381, 382, 635
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 35, 228, 751
BseNI ACTGG 1 cut(s) 733
BseRI GAGGAG 2 cut(s) 651, 678
BseSI GKGCMC 1 cut(s) 77
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 3 cut(s) 703, 736, 764
Bsh1285I CGRYCG 2 cut(s) 160, 367
BshFI GGCC 3 cut(s) 75, 159, 589
BshNI GGYRCC 3 cut(s) 32, 371, 458
BshTI ACCGGT 1 cut(s) 251
BsiEI CGRYCG 2 cut(s) 160, 367
BsiHKAI GWGCWC 3 cut(s) 22, 225, 354
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 3 cut(s) 36, 156, 252
BslFI GGGAC 2 cut(s) 18, 37
BslI CCNNNNNNNGG 5 cut(s) 70, 161, 381, 382, 635
BsmAI GTCTC 2 cut(s) 713, 740
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 2 cut(s) 18, 37
BsnI GGCC 3 cut(s) 75, 159, 589
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 4 cut(s) 22, 77, 225, 354
Bsp143I GATC 3 cut(s) 309, 314, 441
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 8 cut(s) 67, 78, 82, 88, 170, 202, 234, 270
BspANI GGCC 3 cut(s) 75, 159, 589
BspCNI CTCAG 3 cut(s) 34, 229, 750
BspLI GGNNCC 7 cut(s) 34, 40, 75, 76, 331, 373, 460
BspMAI CTGCAG 1 cut(s) 754
BspMI ACCTGC 1 cut(s) 493
BspOI GCTAGC 1 cut(s) 669
BspPI GGATC 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 3 cut(s) 32, 371, 458
BspTNI GGTCTC 1 cut(s) 713
BsrBI CCGCTC 2 cut(s) 90, 172
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 2 cut(s) 35, 251
BsrI ACTGG 1 cut(s) 733
BssAI RCCGGY 2 cut(s) 35, 251
BssECI CCNNGG 6 cut(s) 154, 160, 324, 367, 692, 765
BssMI GATC 3 cut(s) 309, 314, 441
BssNI GRCGYC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 765
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 3 cut(s) 439, 693, 721
Bst4CI ACNGT 2 cut(s) 368, 673
Bst6I CTCTTC 2 cut(s) 230, 569
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 758
BstC8I GCNNGC 6 cut(s) 37, 82, 107, 174, 587, 667
BstDEI CTNAG 4 cut(s) 21, 237, 591, 737
BstDSI CCRYGG 2 cut(s) 160, 367
BstEII GGTNACC 1 cut(s) 641
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 4 cut(s) 144, 193, 488, 625
BstHHI GCGC 2 cut(s) 111, 167
BstKTI GATC 3 cut(s) 312, 317, 444
BstMAI GTCTC 2 cut(s) 713, 740
BstMBI GATC 3 cut(s) 309, 314, 441
BstMCI CGRYCG 2 cut(s) 160, 367
BstMWI GCNNNNNNNGC 6 cut(s) 81, 173, 220, 551, 595, 758
BstNI CCWGG 3 cut(s) 439, 693, 721
BstPI GGTNACC 1 cut(s) 641
BstSCI CCNGG 4 cut(s) 154, 437, 691, 719
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 77
BstV1I GCAGC 3 cut(s) 703, 736, 764
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 314
BstZI CGGCCG 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 3 cut(s) 75, 159, 589
BtgI CCRYGG 2 cut(s) 160, 367
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 4 cut(s) 144, 193, 488, 625
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 6 cut(s) 37, 82, 107, 174, 587, 667
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 2 cut(s) 111, 167
Cfr10I RCCGGY 2 cut(s) 35, 251
Cfr13I GGNCC 2 cut(s) 73, 74
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 372
CspAI ACCGGT 1 cut(s) 251
CviAII CATG 1 cut(s) 662
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 4 cut(s) 21, 237, 591, 737
DpnI GATC 3 cut(s) 311, 316, 443
DpnII GATC 3 cut(s) 309, 314, 441
EaeI YGGCCR 1 cut(s) 157
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 2 cut(s) 230, 569
EarI CTCTTC 2 cut(s) 230, 569
Ecl136II GAGCTC 2 cut(s) 20, 223
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 3 cut(s) 22, 77, 225
Eco31I GGTCTC 1 cut(s) 713
Eco52I CGGCCG 1 cut(s) 157
Eco53kI GAGCTC 2 cut(s) 20, 223
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 641
EcoICRI GAGCTC 2 cut(s) 20, 223
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO109I RGGNCCY 2 cut(s) 73, 74
EcoO65I GGTNACC 1 cut(s) 641
EcoRII CCWGG 3 cut(s) 437, 691, 719
EcoT14I CCWWGG 1 cut(s) 765
EcoT38I GRGCYC 3 cut(s) 22, 77, 225
ErhI CCWWGG 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 1 cut(s) 665
FaiI YATR 6 cut(s) 399, 494, 536, 611, 654, 663
FaqI GGGAC 2 cut(s) 18, 37
FatI CATG 1 cut(s) 661
FauI CCCGC 2 cut(s) 85, 89
Fnu4HI GCNGC 4 cut(s) 234, 717, 750, 753
FokI GGATG 4 cut(s) 131, 180, 495, 612
FriOI GRGCYC 3 cut(s) 22, 77, 225
Fsp4HI GCNGC 4 cut(s) 234, 717, 750, 753
FspBI CTAG 2 cut(s) 381, 666
GlaI GCGC 2 cut(s) 110, 166
GluI GCNGC 4 cut(s) 234, 717, 750, 753
HaeIII GGCC 3 cut(s) 75, 159, 589
HapII CCGG 3 cut(s) 36, 156, 252
HgaI GACGC 1 cut(s) 118
HhaI GCGC 2 cut(s) 111, 167
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 665
Hin6I GCGC 2 cut(s) 109, 165
HinP1I GCGC 2 cut(s) 109, 165
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 9, 613
HpaII CCGG 3 cut(s) 36, 156, 252
HphI GGTGA 3 cut(s) 127, 404, 583
Hpy188I TCNGA 3 cut(s) 17, 314, 740
Hpy188III TCNNGA 2 cut(s) 295, 422
Hpy99I CGWCG 6 cut(s) 134, 233, 296, 338, 350, 362
HpyAV CCTTC 2 cut(s) 271, 694
HpyCH4III ACNGT 2 cut(s) 368, 673
HpyCH4IV ACGT 2 cut(s) 345, 357
HpyCH4V TGCA 3 cut(s) 342, 509, 752
HpyF10VI GCNNNNNNNGC 6 cut(s) 81, 173, 220, 551, 595, 758
HpyF3I CTNAG 4 cut(s) 21, 237, 591, 737
HpySE526I ACGT 2 cut(s) 345, 357
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 665
HspAI GCGC 2 cut(s) 109, 165
KpnI GGTACC 1 cut(s) 375
KroI GCCGGC 1 cut(s) 35
KroNI GCCGGC 1 cut(s) 37
Kzo9I GATC 3 cut(s) 309, 314, 441
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 4 cut(s) 44, 95, 329, 691
Lsp1109I GCAGC 3 cut(s) 703, 736, 764
LweI GCATC 3 cut(s) 473, 634, 673
MaeI CTAG 2 cut(s) 381, 666
MaeII ACGT 2 cut(s) 345, 357
MaeIII GTNAC 2 cut(s) 133, 641
MalI GATC 3 cut(s) 311, 316, 443
MbiI CCGCTC 2 cut(s) 90, 172
MboI GATC 3 cut(s) 309, 314, 441
MboII GAAGA 4 cut(s) 37, 217, 531, 586
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 4 cut(s) 22, 77, 225, 354
MluCI AATT 2 cut(s) 283, 468
MlyI GAGTC 1 cut(s) 18
MroNI GCCGGC 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 3 cut(s) 36, 156, 252
MspR9I CCNGG 4 cut(s) 156, 439, 693, 721
MvaI CCWGG 3 cut(s) 439, 693, 721
MwoI GCNNNNNNNGC 6 cut(s) 81, 173, 220, 551, 595, 758
NaeI GCCGGC 1 cut(s) 37
NciI CCSGG 1 cut(s) 156
NdeII GATC 3 cut(s) 309, 314, 441
NgoMIV GCCGGC 1 cut(s) 35
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 1 cut(s) 665
NlaIV GGNNCC 7 cut(s) 34, 40, 75, 76, 331, 373, 460
NmuCI GTSAC 1 cut(s) 133
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 225, 342, 354
PdiI GCCGGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 613
PfoI TCCNGGA 1 cut(s) 437
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 4 cut(s) 235, 718, 751, 754
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 2 cut(s) 22, 225
Psp6I CCWGG 3 cut(s) 437, 691, 719
PspEI GGTNACC 1 cut(s) 641
PspGI CCWGG 3 cut(s) 437, 691, 719
PspN4I GGNNCC 7 cut(s) 34, 40, 75, 76, 331, 373, 460
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 2 cut(s) 73, 74
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SacI GAGCTC 2 cut(s) 22, 225
SapI GCTCTTC 1 cut(s) 230
SatI GCNGC 4 cut(s) 234, 717, 750, 753
Sau3AI GATC 3 cut(s) 309, 314, 441
Sau96I GGNCC 2 cut(s) 73, 74
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 4 cut(s) 156, 439, 693, 721
SduI GDGCHC 4 cut(s) 22, 77, 225, 354
SfaNI GCATC 3 cut(s) 473, 634, 673
SfcI CTRYAG 1 cut(s) 750
SmlI CTYRAG 2 cut(s) 122, 539
SmoI CTYRAG 2 cut(s) 122, 539
Sse9I AATT 2 cut(s) 283, 468
SsiI CCGC 8 cut(s) 67, 78, 82, 88, 170, 202, 234, 270
SspMI CTAG 2 cut(s) 381, 666
SstI GAGCTC 2 cut(s) 22, 225
StyD4I CCNGG 4 cut(s) 154, 437, 691, 719
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 2 cut(s) 368, 673
TaiI ACGT 2 cut(s) 348, 360
TaqI TCGA 2 cut(s) 96, 348
TasI AATT 2 cut(s) 283, 468
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 613
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 716, 749, 752
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 3 cut(s) 31, 179, 648
XagI CCTNNNNNAGG 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XspI CTAG 2 cut(s) 381, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.