Rroxscaffold_1G00046690

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
66045100 .. 66046469
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046690.1

Sequence Viewer

Length: 780 bp
ATGGGTCGCGTCATCAGAGCTCAACGTAAGGGAGCGGGCTCCGTCTTCAAGTCCCACACCCACCACCGCAAGGGCCCGGCCCGCTTCCGCTCCCTCGACTACGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGACATCATCCACGACCCCGGTCGCGGTGCCCCGCTCGCTCGCGTCAGCTTCCGTCATCCCTTCCGGTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCCGAGGGGCTTTACACCGGCCAGTTTATTTACTGCGGGAAGAAGGCCAATTTGGTCGTCGGAAATGTGTTGCCGGTCAGATCTATTCCCGAGGGAGCTGTGGTGTGTAATGTCGAGCACCACGTCGGCGACCGCGGAACCCTAGCTAGGGCTTCGGGGGATTACGCTGTGATTATCAGTCACAACCCTGATAATGATACCTCAAGAATCAAGCTTCCTTCTGGTGCCAAGAAGATTGTTCCAAGTGGTTGCCGTGCCATGATTGGTCAAGTTGCAGGTGGAGGCAGAACTGAGAAGCCTATGCTCAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGCCATGCTAGCACAGTCAGGCGTGATGCTCCTCCTGGGCAGAAGGTTGGTCTCATTGCTGCCAGGAGAACCGGTCGTCTCAGAGGACAAGCTGCTGCAACTGCCTCCAAGGAGAAGGCTTGA

Protein Analysis

259

Amino Acids

28.04

Weight (kDa)

10.81

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L2_N PF00181 2 - 90 3.3e-22 Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C PF03947 98 - 224 1.3e-45 Ribosomal Proteins L2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 500
AccB1I GGYRCC 2 cut(s) 164, 458
AccBSI CCGCTC 3 cut(s) 35, 90, 172
AccII CGCG 4 cut(s) 9, 162, 180, 369
AcoI YGGCCR 2 cut(s) 253, 658
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 6 cut(s) 70, 161, 240, 381, 382, 635
AgeI ACCGGT 1 cut(s) 728
AgsI TTSAA 1 cut(s) 49
AjiI CACGTC 1 cut(s) 358
AjnI CCWGG 2 cut(s) 691, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 7 cut(s) 20, 186, 223, 332, 380, 448, 749
AluI AGCT 7 cut(s) 20, 186, 223, 332, 380, 448, 749
Alw21I GWGCWC 3 cut(s) 22, 225, 354
Alw26I GTCTC 2 cut(s) 713, 740
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 7 cut(s) 73, 78, 253, 279, 543, 587, 658
ApaI GGGCCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 716, 749, 752
AsiGI ACCGGT 1 cut(s) 728
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 3 cut(s) 73, 74, 79
AsuC2I CCSGG 2 cut(s) 77, 156
AsuHPI GGTGA 1 cut(s) 127
AsuNHI GCTAGC 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 591
BaeGI GKGCMC 2 cut(s) 77, 169
BalI TGGCCA 1 cut(s) 660
BanI GGYRCC 2 cut(s) 164, 458
BanII GRGCYC 4 cut(s) 22, 41, 77, 225
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 3 cut(s) 22, 225, 354
BbvI GCAGC 3 cut(s) 703, 736, 739
BceAI ACGGC 3 cut(s) 118, 130, 471
BciT130I CCWGG 2 cut(s) 693, 721
BcnI CCSGG 2 cut(s) 77, 156
BcoDI GTCTC 2 cut(s) 713, 740
BfaI CTAG 3 cut(s) 377, 381, 666
BfuAI ACCTGC 1 cut(s) 500
BglII AGATCT 1 cut(s) 314
BisI GCNGC 4 cut(s) 234, 717, 750, 753
BlsI GCNGC 4 cut(s) 235, 718, 751, 754
Bme1390I CCNGG 4 cut(s) 77, 156, 693, 721
BmeT110I CYCGRG 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 358
BmgT120I GGNCC 3 cut(s) 73, 74, 79
BmiI GGNNCC 5 cut(s) 40, 75, 166, 373, 460
BmrFI CCNGG 4 cut(s) 77, 156, 693, 721
BmsI GCATC 2 cut(s) 634, 673
BmtI GCTAGC 1 cut(s) 669
BoxI GACNNNNGTC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 37
BpuEI CTTGAG 3 cut(s) 107, 421, 524
BpuMI CCSGG 2 cut(s) 77, 156
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 6 cut(s) 154, 237, 324, 367, 692, 765
BsaWI WCCGGW 2 cut(s) 201, 728
BsaXI ACNNNNNCTCC 4 cut(s) 321, 351, 715, 745
Bsc4I CCNNNNNNNGG 6 cut(s) 70, 161, 240, 381, 382, 635
Bse118I RCCGGY 4 cut(s) 251, 307, 545, 728
Bse1I ACTGG 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 693, 721
BseDI CCNNGG 6 cut(s) 154, 237, 324, 367, 692, 765
BseGI GGATG 3 cut(s) 144, 193, 625
BseLI CCNNNNNNNGG 6 cut(s) 70, 161, 240, 381, 382, 635
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 2 cut(s) 516, 751
BseNI ACTGG 1 cut(s) 256
BseRI GAGGAG 2 cut(s) 651, 678
BseSI GKGCMC 2 cut(s) 77, 169
BseXI GCAGC 3 cut(s) 703, 736, 739
Bsh1236I CGCG 4 cut(s) 9, 162, 180, 369
Bsh1285I CGRYCG 3 cut(s) 160, 367, 733
BshFI GGCC 7 cut(s) 75, 80, 255, 281, 545, 589, 660
BshNI GGYRCC 2 cut(s) 164, 458
BshTI ACCGGT 1 cut(s) 728
BsiEI CGRYCG 3 cut(s) 160, 367, 733
BsiHKAI GWGCWC 3 cut(s) 22, 225, 354
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 7 cut(s) 77, 156, 202, 252, 308, 546, 729
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 6 cut(s) 70, 161, 240, 381, 382, 635
BsmAI GTCTC 2 cut(s) 713, 740
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 37
BsnI GGCC 7 cut(s) 75, 80, 255, 281, 545, 589, 660
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 73
Bsp1286I GDGCHC 6 cut(s) 22, 41, 77, 169, 225, 354
Bsp143I GATC 1 cut(s) 314
BspANI GGCC 7 cut(s) 75, 80, 255, 281, 545, 589, 660
BspCNI CTCAG 2 cut(s) 517, 750
BspFNI CGCG 4 cut(s) 9, 162, 180, 369
BspLI GGNNCC 5 cut(s) 40, 75, 166, 373, 460
BspMI ACCTGC 1 cut(s) 500
BspOI GCTAGC 1 cut(s) 669
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 164, 458
BspTNI GGTCTC 1 cut(s) 713
BsrBI CCGCTC 3 cut(s) 35, 90, 172
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 4 cut(s) 251, 307, 545, 728
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 4 cut(s) 251, 307, 545, 728
BssECI CCNNGG 6 cut(s) 154, 237, 324, 367, 692, 765
BssMI GATC 1 cut(s) 314
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 2 cut(s) 693, 721
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 2 cut(s) 230, 569
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 7 cut(s) 37, 82, 107, 174, 178, 587, 667
BstDEI CTNAG 3 cut(s) 525, 591, 737
BstDSI CCRYGG 1 cut(s) 367
BstEII GGTNACC 1 cut(s) 641
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 3 cut(s) 144, 193, 625
BstFNI CGCG 4 cut(s) 9, 162, 180, 369
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 2 cut(s) 713, 740
BstMBI GATC 1 cut(s) 314
BstMCI CGRYCG 3 cut(s) 160, 367, 733
BstMWI GCNNNNNNNGC 7 cut(s) 81, 173, 220, 551, 595, 666, 758
BstNI CCWGG 2 cut(s) 693, 721
BstPAI GACNNNNGTC 1 cut(s) 156
BstPI GGTNACC 1 cut(s) 641
BstSCI CCNGG 4 cut(s) 75, 154, 691, 719
BstSLI GKGCMC 2 cut(s) 77, 169
BstUI CGCG 4 cut(s) 9, 162, 180, 369
BstV1I GCAGC 3 cut(s) 703, 736, 739
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 314
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 314
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 7 cut(s) 75, 80, 255, 281, 545, 589, 660
BtgI CCRYGG 1 cut(s) 367
BtrI CACGTC 1 cut(s) 358
BtsCI GGATG 3 cut(s) 144, 193, 625
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 7 cut(s) 37, 82, 107, 174, 178, 587, 667
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 4 cut(s) 251, 307, 545, 728
Cfr13I GGNCC 3 cut(s) 73, 74, 79
Cfr42I CCGCGG 1 cut(s) 370
CseI GACGC 2 cut(s) 118, 169
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 728
CviAII CATG 2 cut(s) 493, 662
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 525, 591, 737
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
EaeI YGGCCR 2 cut(s) 253, 658
Eam1104I CTCTTC 2 cut(s) 230, 569
EarI CTCTTC 2 cut(s) 230, 569
Ecl136II GAGCTC 2 cut(s) 20, 223
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 4 cut(s) 22, 41, 77, 225
Eco31I GGTCTC 1 cut(s) 713
Eco53kI GAGCTC 2 cut(s) 20, 223
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 641
EcoICRI GAGCTC 2 cut(s) 20, 223
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 73
EcoO65I GGTNACC 1 cut(s) 641
EcoRII CCWGG 2 cut(s) 691, 719
EcoT14I CCWWGG 1 cut(s) 765
EcoT38I GRGCYC 4 cut(s) 22, 41, 77, 225
ErhI CCWWGG 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 2 cut(s) 496, 665
FaiI YATR 5 cut(s) 494, 536, 611, 654, 663
FaqI GGGAC 1 cut(s) 37
FatI CATG 2 cut(s) 492, 661
FauI CCCGC 4 cut(s) 28, 89, 177, 263
Fnu4HI GCNGC 4 cut(s) 234, 717, 750, 753
FokI GGATG 3 cut(s) 131, 180, 612
FriOI GRGCYC 4 cut(s) 22, 41, 77, 225
Fsp4HI GCNGC 4 cut(s) 234, 717, 750, 753
FspBI CTAG 3 cut(s) 377, 381, 666
GlaI GCGC 1 cut(s) 110
GluI GCNGC 4 cut(s) 234, 717, 750, 753
HaeIII GGCC 7 cut(s) 75, 80, 255, 281, 545, 589, 660
HapII CCGG 7 cut(s) 77, 156, 202, 252, 308, 546, 729
HgaI GACGC 2 cut(s) 118, 169
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 496, 665
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 441, 613
HpaII CCGG 7 cut(s) 77, 156, 202, 252, 308, 546, 729
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 5 cut(s) 17, 296, 314, 569, 740
Hpy188III TCNNGA 2 cut(s) 323, 438
Hpy99I CGWCG 4 cut(s) 134, 233, 296, 362
HpyAV CCTTC 5 cut(s) 208, 271, 462, 694, 766
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 2 cut(s) 25, 357
HpyCH4V TGCA 2 cut(s) 509, 755
HpyF10VI GCNNNNNNNGC 7 cut(s) 81, 173, 220, 551, 595, 666, 758
HpyF3I CTNAG 3 cut(s) 525, 591, 737
HpySE526I ACGT 2 cut(s) 25, 357
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 496, 665
HspAI GCGC 1 cut(s) 109
KspI CCGCGG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 314
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 5 cut(s) 32, 44, 95, 329, 691
Lsp1109I GCAGC 3 cut(s) 703, 736, 739
LweI GCATC 2 cut(s) 634, 673
MaeI CTAG 3 cut(s) 377, 381, 666
MaeII ACGT 2 cut(s) 25, 357
MaeIII GTNAC 3 cut(s) 133, 413, 641
MalI GATC 1 cut(s) 316
MbiI CCGCTC 3 cut(s) 35, 90, 172
MboI GATC 1 cut(s) 314
MboII GAAGA 5 cut(s) 37, 217, 286, 478, 586
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 6 cut(s) 22, 41, 77, 169, 225, 354
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 1 cut(s) 283
MluNI TGGCCA 1 cut(s) 660
MmeI TCCRAC 1 cut(s) 274
Mox20I TGGCCA 1 cut(s) 660
MscI TGGCCA 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 660
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 7 cut(s) 77, 156, 202, 252, 308, 546, 729
MspR9I CCNGG 4 cut(s) 77, 156, 693, 721
MvaI CCWGG 2 cut(s) 693, 721
MvnI CGCG 4 cut(s) 9, 162, 180, 369
MwoI GCNNNNNNNGC 7 cut(s) 81, 173, 220, 551, 595, 666, 758
NciI CCSGG 2 cut(s) 77, 156
NdeII GATC 1 cut(s) 314
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 2 cut(s) 496, 665
NlaIV GGNNCC 5 cut(s) 40, 75, 166, 373, 460
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 133, 413
PaqCI CACCTGC 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 225, 234, 354
PfeI GAWTC 2 cut(s) 441, 613
PinAI ACCGGT 1 cut(s) 728
PkrI GCNGC 4 cut(s) 235, 718, 751, 754
PshAI GACNNNNGTC 1 cut(s) 156
Psp124BI GAGCTC 2 cut(s) 22, 225
Psp6I CCWGG 2 cut(s) 691, 719
PspEI GGTNACC 1 cut(s) 641
PspGI CCWGG 2 cut(s) 691, 719
PspN4I GGNNCC 5 cut(s) 40, 75, 166, 373, 460
PspOMI GGGCCC 1 cut(s) 73
PspPI GGNCC 3 cut(s) 73, 74, 79
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacI GAGCTC 2 cut(s) 22, 225
SacII CCGCGG 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 230
SatI GCNGC 4 cut(s) 234, 717, 750, 753
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 3 cut(s) 73, 74, 79
ScrFI CCNGG 4 cut(s) 77, 156, 693, 721
SduI GDGCHC 6 cut(s) 22, 41, 77, 169, 225, 354
SfaNI GCATC 2 cut(s) 634, 673
Sfr303I CCGCGG 1 cut(s) 370
SgrBI CCGCGG 1 cut(s) 370
SmlI CTYRAG 3 cut(s) 122, 436, 539
SmoI CTYRAG 3 cut(s) 122, 436, 539
Sse9I AATT 1 cut(s) 283
SspMI CTAG 3 cut(s) 377, 381, 666
SstI GAGCTC 2 cut(s) 22, 225
StyD4I CCNGG 4 cut(s) 75, 154, 691, 719
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 2 cut(s) 28, 360
TaqI TCGA 2 cut(s) 96, 348
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 2 cut(s) 441, 613
TseFI GTSAC 2 cut(s) 133, 413
TseI GCWGC 3 cut(s) 716, 749, 752
Tsp45I GTSAC 2 cut(s) 133, 413
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 3 cut(s) 31, 179, 648
XagI CCTNNNNNAGG 1 cut(s) 633
XcmI CCANNNNNNNNNTGG 1 cut(s) 653
XspI CTAG 3 cut(s) 377, 381, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.