Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003560

Physical Location & Seq

Genomic Coordinates Forward (+)

17097405 .. 17098906

Gene Structure 1502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGTCGTGTTATCAGAGCACAACGTAAGGGAGCTGGTTCCGTCTTCAAATCCCACACTCACCACCGTAAAGGTCCGGCCAAATTCAGGAGTCTCGATTTCGGGGAGAGAAATGGTTATCTGAAAGGTGTTGTGACGGAGATCATTCACGATCCAGGACGTGGTGCTCCATTGGCTCGTGTAGCTTTCCGTCATCCTTTCCGATTCAAGAAGCAGAAGGAGCTTTTCGTTGCTGCTGAAGGTATGTATACCGGTCAGTTTCTTTACTGTGGGAAGAAAGCTACTCTCGTCGTCGGAAATGTTCTTCCTCTCAGATCTATTCCTGAAGGAGCTGTTATTTGTAACGTTGAACATCATGTTGGTGATCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAATCCTGATAACGACACTAGCAGGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTGCCAAGTGGATGCAGGGCCATGATTGGTCAAGTTGCAGGTGGTGGAAGAACAGAGAAGCCGATGCTCAAGGCTGGTAACGCATACCACAAGTACCGTGTGAAGAGAAACTGCTGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTTGAGCATCCTCACGGAGGAGGTAACCATCAACATATTGGTCACGCTAGTACTGTTCGTCGTGATGCACCACCAGGAAAAAAGGTTGGTCTTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTCTTGCTTCCAAGGCAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

258

Amino Acids

27.95

Weight (kDa)

10.83

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	2 - 90	1.2e-23	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	98 - 224	6.4e-46	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18020 AT3G51190 AT4G36130
fragaria_vesca	FvH4_3g11370 FvH4_3g11370 FvH4_3g19850
malus_domestica	MD05G1264000.v1.1 MD10G1241900.v1.1
prunus_persica	Prupe.1G202200_v2.0.a1 Prupe.4G101600_v2.0.a1
pyrus_communis	pycom05g24810 pycom10g20260 pycom10g20270
rosa_chinensis	RchiOBHm_Chr5g0018321 RchiOBHm_Chr5g0033291
rosa_laevigata	RLG00000032351 RLG00000033468
rosa_multiflora	Rmu_co8428655.1_g000001 Rmu_sc0002206.1_g000007 Rmu_sc0005702.1_g000002 Rmu_sc0009715.1_g000002 Rmu_sc0011919.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046690
rosa_rugosa	Rorug05G0041300 Rorug05G0139200
rosa_samantha	Rh5AG134500 Rh5AG230600 Rh5BG133300 Rh5BG231600 Rh5CG145000 Rh5CG260300 Rh5DG134700 Rh5DG236700
rosa_wichuraiana	Rw5G011760 Rw5G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	500
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	248
AclI	AACGTT	1 cut(s)	345
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	2 cut(s)	258, 345
AfaI	GTAC	2 cut(s)	566, 670
AfiI	CCNNNNNNNGG	3 cut(s)	87, 161, 635
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	49, 208, 350
AhdI	GACNNNNNGTC	1 cut(s)	732
AjiI	CACGTC	1 cut(s)	161
AjnI	CCWGG	2 cut(s)	154, 691
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	7 cut(s)	35, 185, 223, 281, 332, 386, 749
AluI	AGCT	7 cut(s)	35, 185, 223, 281, 332, 386, 749
Alw21I	GWGCWC	2 cut(s)	22, 169
Alw26I	GTCTC	2 cut(s)	98, 740
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	3 cut(s)	78, 489, 587
ApeKI	GCWGC	4 cut(s)	233, 716, 749, 752
ApoI	RAATTY	1 cut(s)	83
AsiGI	ACCGGT	1 cut(s)	251
AspS9I	GGNCC	2 cut(s)	74, 489
AsuHPI	GGTGA	3 cut(s)	53, 374, 404
AsuII	TTCGAA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	74
AxyI	CCTNAGG	1 cut(s)	591
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	22, 169
BbvI	GCAGC	4 cut(s)	220, 703, 736, 739
BccI	CCATC	2 cut(s)	460, 654
BciT130I	CCWGG	2 cut(s)	156, 693
BcoDI	GTCTC	2 cut(s)	98, 740
BfaI	CTAG	3 cut(s)	381, 435, 666
BfuAI	ACCTGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	4 cut(s)	234, 717, 750, 753
BlsI	GCNGC	4 cut(s)	235, 718, 751, 754
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	156, 693
Bme18I	GGWCC	1 cut(s)	74
BmeRI	GACNNNNNGTC	1 cut(s)	732
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	74, 489
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	156, 693
BmsI	GCATC	4 cut(s)	473, 525, 634, 673
BpiI	GAAGAC	1 cut(s)	37
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	765
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 161, 635
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	617, 733
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	156, 693
BseDI	CCNNGG	1 cut(s)	765
BseGI	GGATG	3 cut(s)	193, 488, 625
BseLI	CCNNNNNNNGG	3 cut(s)	87, 161, 635
BseMII	CTCAG	2 cut(s)	325, 751
BseNI	ACTGG	2 cut(s)	617, 733
BseRI	GAGGAG	1 cut(s)	651
BseXI	GCAGC	4 cut(s)	220, 703, 736, 739
BshFI	GGCC	3 cut(s)	80, 491, 589
BshTI	ACCGGT	1 cut(s)	251
BsiHKAI	GWGCWC	2 cut(s)	22, 169
BsiSI	CCGG	2 cut(s)	77, 252
BslI	CCNNNNNNNGG	3 cut(s)	87, 161, 635
BsmAI	GTCTC	2 cut(s)	98, 740
BsmBI	CGTCTC	1 cut(s)	740
BsnI	GGCC	3 cut(s)	80, 491, 589
Bsp119I	TTCGAA	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	22, 169
Bsp143I	GATC	4 cut(s)	141, 151, 314, 364
BspANI	GGCC	3 cut(s)	80, 491, 589
BspCNI	CTCAG	2 cut(s)	324, 750
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	617, 733
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	765
BssMI	GATC	4 cut(s)	141, 151, 314, 364
BssNAI	GTATAC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	765
Bst1107I	GTATAC	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	156, 693
Bst4CI	ACNGT	4 cut(s)	68, 269, 569, 673
Bst6I	CTCTTC	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	3 cut(s)	311, 591, 737
BstEII	GGTNACC	1 cut(s)	641
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	193, 488, 625
BstKTI	GATC	4 cut(s)	144, 154, 317, 367
BstMAI	GTCTC	2 cut(s)	98, 740
BstMBI	GATC	4 cut(s)	141, 151, 314, 364
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 220, 551, 758, 767
BstNI	CCWGG	2 cut(s)	156, 693
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	2 cut(s)	154, 691
BstV1I	GCAGC	4 cut(s)	220, 703, 736, 739
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BstZ17I	GTATAC	1 cut(s)	249
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	80, 491, 589
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	3 cut(s)	193, 488, 625
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	74, 489
Csp6I	GTAC	2 cut(s)	565, 669
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	2 cut(s)	356, 493
CviQI	GTAC	2 cut(s)	565, 669
DdeI	CTNAG	3 cut(s)	311, 591, 737
DpnI	GATC	4 cut(s)	143, 153, 316, 366
DpnII	GATC	4 cut(s)	141, 151, 314, 364
DriI	GACNNNNNGTC	1 cut(s)	732
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	569
Eam1105I	GACNNNNNGTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	569
Eco130I	CCWWGG	1 cut(s)	765
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	258, 345
Eco81I	CCTNAGG	1 cut(s)	591
Eco91I	GGTNACC	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoO65I	GGTNACC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	154, 691
EcoT14I	CCWWGG	1 cut(s)	765
ErhI	CCWWGG	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	740
FaeI	CATG	2 cut(s)	359, 496
FaiI	YATR	7 cut(s)	245, 249, 357, 494, 556, 611, 654
FatI	CATG	2 cut(s)	355, 492
FblI	GTMKAC	1 cut(s)	248
Fnu4HI	GCNGC	4 cut(s)	234, 717, 750, 753
FokI	GGATG	3 cut(s)	180, 495, 612
Fsp4HI	GCNGC	4 cut(s)	234, 717, 750, 753
FspBI	CTAG	3 cut(s)	381, 435, 666
GluI	GCNGC	4 cut(s)	234, 717, 750, 753
HaeIII	GGCC	3 cut(s)	80, 491, 589
HapII	CCGG	2 cut(s)	77, 252
Hin1II	CATG	2 cut(s)	359, 496
HinfI	GANTC	3 cut(s)	91, 204, 613
HpaII	CCGG	2 cut(s)	77, 252
HphI	GGTGA	3 cut(s)	53, 374, 404
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	6 cut(s)	17, 123, 203, 296, 314, 740
Hpy188III	TCNNGA	7 cut(s)	88, 95, 149, 208, 323, 422, 680
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	293, 296, 681
HpyAV	CCTTC	3 cut(s)	211, 233, 320
HpyCH4III	ACNGT	4 cut(s)	68, 269, 569, 673
HpyCH4IV	ACGT	3 cut(s)	25, 160, 345
HpyCH4V	TGCA	4 cut(s)	486, 509, 686, 719
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 220, 551, 758, 767
HpyF3I	CTNAG	3 cut(s)	311, 591, 737
HpySE526I	ACGT	3 cut(s)	25, 160, 345
Hsp92II	CATG	2 cut(s)	359, 496
Kzo9I	GATC	4 cut(s)	141, 151, 314, 364
LmnI	GCTCC	4 cut(s)	32, 172, 220, 329
Lsp1109I	GCAGC	4 cut(s)	220, 703, 736, 739
LweI	GCATC	4 cut(s)	473, 525, 634, 673
MaeI	CTAG	3 cut(s)	381, 435, 666
MaeII	ACGT	3 cut(s)	25, 160, 345
MaeIII	GTNAC	5 cut(s)	133, 341, 548, 641, 659
MalI	GATC	4 cut(s)	143, 153, 316, 366
MboI	GATC	4 cut(s)	141, 151, 314, 364
MboII	GAAGA	7 cut(s)	37, 286, 296, 475, 478, 531, 586
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	2 cut(s)	22, 169
MluCI	AATT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	6 cut(s)	318, 629, 632, 639, 717, 734
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	2 cut(s)	77, 252
MspR9I	CCNGG	2 cut(s)	156, 693
MvaI	CCWGG	2 cut(s)	156, 693
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 220, 551, 758, 767
NdeII	GATC	4 cut(s)	141, 151, 314, 364
NlaIII	CATG	2 cut(s)	359, 496
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	133, 659
NspV	TTCGAA	1 cut(s)	461
PaqCI	CACCTGC	1 cut(s)	500
PfeI	GAWTC	2 cut(s)	204, 613
PflMI	CCANNNNNTGG	1 cut(s)	161
PfoI	TCCNGGA	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	235, 718, 751, 754
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp1406I	AACGTT	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	154, 691
PspEI	GGTNACC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	154, 691
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	74, 489
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	2 cut(s)	566, 670
RsaNI	GTAC	2 cut(s)	565, 669
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	4 cut(s)	234, 717, 750, 753
Sau3AI	GATC	4 cut(s)	141, 151, 314, 364
Sau96I	GGNCC	2 cut(s)	74, 489
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	156, 693
SduI	GDGCHC	2 cut(s)	22, 169
SfaNI	GCATC	4 cut(s)	473, 525, 634, 673
SfuI	TTCGAA	1 cut(s)	461
SinI	GGWCC	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	1 cut(s)	83
SspMI	CTAG	3 cut(s)	381, 435, 666
StyD4I	CCNGG	2 cut(s)	154, 691
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	4 cut(s)	68, 269, 569, 673
TaiI	ACGT	3 cut(s)	28, 163, 348
TaqI	TCGA	2 cut(s)	96, 461
TasI	AATT	1 cut(s)	83
TatI	WGTACW	1 cut(s)	668
TfiI	GAWTC	2 cut(s)	204, 613
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TseFI	GTSAC	2 cut(s)	133, 659
TseI	GCWGC	4 cut(s)	233, 716, 749, 752
Tsp45I	GTSAC	2 cut(s)	133, 659
TspDTI	ATGAA	1 cut(s)	626
TspGWI	ACGGA	4 cut(s)	31, 152, 179, 648
Van91I	CCANNNNNTGG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	74
XagI	CCTNNNNNAGG	1 cut(s)	633
XapI	RAATTY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XmiI	GTMKAC	1 cut(s)	248
XspI	CTAG	3 cut(s)	381, 435, 666
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.