Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003560

Physical Location & Seq

Genomic Coordinates Forward (+)

12686436 .. 12695512

Gene Structure 9077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGAGTCTAGGAGCTTGTATATTTAGAATACGTTCGCGCGAAAGGCCACTGCCTACGAATTTGAGGATGAAGCAAGTAGCTACCTTCTCTTTCGGTAGAATATGTGATGACTACTTCTTCTTCTGTCTTATCTTCTTCCTGGGTTGCTTCTGGTTCCATGCTTCCACTGCCCAAAATGCTACTACGGACCCAACCGAAGTGGAGGCGTTGAACTCTATATTATTACGATGGGACGCGCCAGCGGTGCCCCTGTGGAACATCAGTGGAGAGCCATGCAGTGGATCGGCCATCGATGGCACCAACTTCGAGGACCCAGATAATAACCCAGCCATCACTTGCGACTGTAGTTTTGACAGTAGCACCACCTGCCATATCACTCAATTGAGAGTTTATGCTTTGGACAAAACAGGAGTGTTACCTGAAGAACTTGTGGCTTTGAAATATCTTACTTTTTTCAAAATCGATCAGAACTATTTCACCGGTCCCCTACCAGCATGGATTGGCAATATGTCCGAGTTGACGCAGTTGTCGATGGCCCACAATGACTTCTATGGACCCATCCCCAAGGAGCTTGGAAACCTTAAGAACCTAAATCTGCTGTCCTTTGGAATAAATAATTTCTCTGGAACACTGCCTCCCGAACTTGGTAATTTAGTCAATCTCGAAGCGCTTTACATAAACAGCTGTGGACTTGGTGGTGAAATTCCTAAAACATTTGCTAAACTTAACAAAATGCAAATCCTATGGGCATCAGACAGTCCTTTCTCAGGAAAGATACCGGATTTCATAGGGAATTGGACAAAGCTAAACACCTTGAGATTTCAAGGGAATTCTTTTGAAGGCCCAATACCAAGCAGTTTTTCTCAGTTGACCTCAATGAATTCTCTACGAATCAGTGATATCTATAATGTGAGCTCCTCTCTTGACTTCATAAGGAATTTGAAGAACTTGACTGATTTAGCTCTCCGAAATGCATTAGTCACTGGCCGCATCCCTTCTGATATTAGAGAATATCAAAATTTAAATATACTGGATTTGGGTTTCAACAATATAACAGGTCAACTCCCAAGTGACTTGTTCAACATGAGTTCTCTCACATCCTTATTTCTTGGAAATAATAGTTTGTCTGGAGTTCTGCCTAGCCAAAAGAGTGATCGTCTTCAAACCATAGATTTATCTTATAACTATTTATCAGGAAGTCTTCCCCCATGGGTAACCACAATATCGCAACTGAACTTGGTGGTCAACAACTTCACTTTTAACGAAAGTTCAGAAATAATGCTTCCTGGATTGAATTGCCTTCAAAGAAATTTTCCTTGCAATAGAAATGCCCCACGCTATGCAAACTTCTCAATCAACTGTGGAGGACCAGACATGAGAGGAAGTGATGGCATATTATATGAGGCAGAAAACTCAACTCTTGGCCCAGCAACATATAATGTAACCAGTACAGAGAAATGGGCTGTTAGCAATGTGGGCTTGTTTGCTGACAGGAAGAATCCAAGCTATTGGTTTAATTCCCTGGCACAGGTTGCTGGGTCGGATGTGACCCCAGAGCTTTTCCAGACTTCAAGATTATCTCCAGGATCACTGAGATACTATGGCTTGGGTCTCCAGAATGGACCTTATACTGTAAAATTACAATTTGCAGAAATGGTTTTTGATGATCGTGCATCACAAACTTGGAAAAGTTTAGGAAGGCGAGTATTTGATATCTACATTCAGGGGCATCTAGAACTGAAGGACTTTGACATATCCAAGGAGGCAGGTGGTGTTTTAAGAGTAGCAACGAGAAACTTCAATGTAAACGTGTCGGACAATTATGTTGAAATTCATTTGTTCTGGGCTGGTAAGGGGACCTGCTGCATACCTAATCAAGGTGATTACGGTCCACTAATATCAACGGTCAATGCTGTTCCAGATTTTAAACCAACTGTTTCTGGGATTCCACCAACTACTCGAGGAAAGAAGAGCATGACAGGGGTGATTGTTGGCGTTGCAGTCTCTGTCGGAGTTGTGAGCTTGCTATTAATATTTGCAGTTTTATATTTGAGGAGAAAAATACCAGACAAGGATGACGATGAAGAACTTCAAGGATTAGACCCGCGACCAAATACGTTCAGTTATAGTGAGTTAAAAGCTGCAACAGGGGATTTTAATCTTTCAAATAAACTAGGGGAGGGAGGATATGGCGCCGTTTACAAGGGCATACTTTCTGAAGCGAGGTTAGTGGCTGTGAAGCAACTTTCTGTAGCATCTCACCAAGGGAAGAGTCAATTTGCAGCAGAAATTGCTGCCATATCTGCAGTGCAACATCGCAATCTAGTGAAACTGTTTGGATGCTGTGTTGAAGGAAACCAGCGAATTTTGGTTTATGAATATCTTGAAAACAAGAGCCTTGATCAGGCACTTTTTGGAAACAACTTGCATCTTGACTGGCATACCAGATTCAATATCTTGTTGGGAACAGCAAGAGGACTTGCCTATCTTCATGAGGAGTCGAGGCCAAGGATAGTACATAGAGATGTCAAAGCCAGTAATATTTTGCTTGATGCAGAACTCTCCCCAAAAATATCAGATTTTGGACTGGCAAAGCTTTATGATGATGAGAAAACCCACATCAGCACCCGAGTTGCAGGGACAATAGGCTATTTGGCACCGGAGTATGCAATGCGGGGACATCTGACTGAAAAGGCTGATGTATTCGGTTTTGGAGTTGTCATTTTGGAAACTCTTAGTGGGAGACCGAACACTGACAATGACTTGGATGCCGGAGAGATTTATCTCCTTGATTGGGCATGGACTCTACATGAAAAAAATGAGCGTTTGGGGCTTGTGGATCCGAGACTGACTGACTTTGATGAAGAAGAAGCAAATAGATTGATAAGAGCAGCTTTCCTGTGTACTCAGACATCCCCATTGATGCGGCCATCTATGTCTCGTGTGGTGGCCATGCTTGCTGGAGATATTGAAGTAGGTAATGTTATGGCAAAGCCAAGTTATTTGACAGACTGGGATTTCAAAGATGTAACAGGTAGCTTCTTGATTGATGGTGATACCCCCTCAACTGGGATGACTCACCCCAACAATCAATCTACTGGCATCACAACCGGTGCTAACACCGGAATTGACCTGATGCAGTCTCCTATGAATCTTAATCATTCATTGCTCACTGGGATTATAGGAGAAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

1065

Amino Acids

117.55

Weight (kDa)

5.36

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	122 - 201	9.2e-06	Leucine-rich repeat region
LRR_14	PF23598	209 - 298	6e-07	Leucine-rich repeat region
LRR_14	PF23598	287 - 374	9.3e-06	Leucine-rich repeat region
Malectin	PF11721	450 - 634	2.7e-40	Malectin domain
Pkinase	PF00069	720 - 921	7.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	720 - 984	1.5e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18020 AT3G51190 AT4G36130
fragaria_vesca	FvH4_3g11370 FvH4_3g11370 FvH4_3g19850
malus_domestica	MD05G1264000.v1.1 MD10G1241900.v1.1
prunus_persica	Prupe.1G202200_v2.0.a1 Prupe.4G101600_v2.0.a1
pyrus_communis	pycom05g24810 pycom10g20260 pycom10g20270
rosa_chinensis	RchiOBHm_Chr5g0018321 RchiOBHm_Chr5g0033291
rosa_laevigata	RLG00000032351 RLG00000033468
rosa_multiflora	Rmu_co8428655.1_g000001 Rmu_sc0002206.1_g000007 Rmu_sc0005702.1_g000002 Rmu_sc0009715.1_g000002 Rmu_sc0011919.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046690
rosa_rugosa	Rorug05G0041300 Rorug05G0139200
rosa_samantha	Rh5AG134500 Rh5AG230600 Rh5BG133300 Rh5BG231600 Rh5CG145000 Rh5CG260300 Rh5DG134700 Rh5DG236700
rosa_wichuraiana	Rw5G011760 Rw5G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1182
AarI	CACCTGC	2 cut(s)	374, 1757
AasI	GACNNNNNNGTC	1 cut(s)	526
Acc36I	ACCTGC	3 cut(s)	374, 1757, 1868
AccB1I	GGYRCC	4 cut(s)	244, 296, 2192, 2656
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccII	CGCG	4 cut(s)	37, 39, 236, 2107
AciI	CCGC	5 cut(s)	242, 988, 2105, 2674, 2926
AclWI	GGATC	4 cut(s)	289, 1594, 2834, 2847
AcoI	YGGCCR	4 cut(s)	285, 985, 2927, 2949
AcsI	RAATTY	9 cut(s)	58, 702, 829, 880, 937, 1018, 1309, 1830, 2364
AcuI	CTGAAG	3 cut(s)	441, 1760, 2238
AcyI	GRCGYC	1 cut(s)	2193
AfaI	GTAC	3 cut(s)	1450, 2517, 2905
AfeI	AGCGCT	1 cut(s)	669
AfiI	CCNNNNNNNGG	9 cut(s)	278, 644, 767, 1528, 1877, 2404, 2794, 3068, 3069
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	1809
AgeI	ACCGGT	2 cut(s)	479, 3110
AjnI	CCWGG	4 cut(s)	138, 1285, 1521, 1582
AjuI	GAANNNNNNNTTGG	2 cut(s)	844, 876
AloI	GAACNNNNNNTCC	2 cut(s)	619, 651
Alw21I	GWGCWC	1 cut(s)	917
Alw26I	GTCTC	6 cut(s)	1616, 2008, 2737, 2839, 2943, 3147
AlwI	GGATC	4 cut(s)	289, 1594, 2834, 2847
AlwNI	CAGNNNCTG	1 cut(s)	2006
Ama87I	CYCGRG	2 cut(s)	1959, 2628
Aor51HI	AGCGCT	1 cut(s)	669
AoxI	GGCC	9 cut(s)	44, 285, 534, 841, 985, 1423, 2504, 2927, 2949
ApeKI	GCWGC	5 cut(s)	1863, 2141, 2282, 2294, 2891
ApoI	RAATTY	9 cut(s)	58, 702, 829, 880, 937, 1018, 1309, 1830, 2364
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AseI	ATTAAT	1 cut(s)	2030
AsiGI	ACCGGT	2 cut(s)	479, 3110
Asp700I	GAANNNNTTC	3 cut(s)	31, 473, 2088
AspLEI	GCGC	4 cut(s)	39, 238, 670, 2195
AsuHPI	GGTGA	7 cut(s)	469, 710, 1892, 1996, 2252, 3065, 3071
AvaI	CYCGRG	2 cut(s)	1959, 2628
AvaII	GGWCC	8 cut(s)	187, 310, 482, 554, 1367, 1622, 1857, 1889
BaeGI	GKGCMC	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	2951
BamHI	GGATCC	1 cut(s)	2839
BanI	GGYRCC	4 cut(s)	244, 296, 2192, 2656
BanII	GRGCYC	1 cut(s)	917
BarI	GAAGNNNNNNTAC	2 cut(s)	831, 863
BauI	CACGAG	1 cut(s)	2940
BbsI	GAAGAC	2 cut(s)	1151, 1193
Bbv12I	GWGCWC	1 cut(s)	917
BbvI	GCAGC	5 cut(s)	1850, 2128, 2281, 2294, 2903
BccI	CCATC	9 cut(s)	222, 287, 296, 338, 526, 566, 1382, 2938, 3044
BceAI	ACGGC	1 cut(s)	2180
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciT130I	CCWGG	4 cut(s)	140, 1287, 1523, 1584
BclI	TGATCA	1 cut(s)	2401
BcoDI	GTCTC	6 cut(s)	1616, 2008, 2737, 2839, 2943, 3147
BfaI	CTAG	5 cut(s)	8, 1140, 1733, 2174, 2324
BfmI	CTRYAG	3 cut(s)	343, 2250, 2304
BfoI	RGCGCY	2 cut(s)	671, 2196
BfrI	CTTAAG	1 cut(s)	581
BfuAI	ACCTGC	3 cut(s)	374, 1757, 1868
BisI	GCNGC	7 cut(s)	988, 1864, 2142, 2283, 2295, 2892, 2927
BlsI	GCNGC	7 cut(s)	989, 1865, 2143, 2284, 2296, 2893, 2928
Bme1390I	CCNGG	4 cut(s)	140, 1287, 1523, 1584
Bme18I	GGWCC	8 cut(s)	187, 310, 482, 554, 1367, 1622, 1857, 1889
BmeT110I	CYCGRG	2 cut(s)	1959, 2628
BmrFI	CCNGG	4 cut(s)	140, 1287, 1523, 1584
BmrI	ACTGGG	3 cut(s)	3022, 3078, 3183
BmuI	ACTGGG	3 cut(s)	3022, 3078, 3183
BpiI	GAAGAC	2 cut(s)	1151, 1193
BplI	GAGNNNNNCTC	2 cut(s)	904, 936
BpmI	CTGGAG	4 cut(s)	1149, 1566, 1598, 2982
BpuEI	CTTGAG	1 cut(s)	835
Bsa29I	ATCGAT	2 cut(s)	291, 462
BsaBI	GATNNNNATC	1 cut(s)	2157
BsaHI	GRCGYC	1 cut(s)	2193
BsaI	GGTCTC	2 cut(s)	1616, 2737
BsaJI	CCNNGG	7 cut(s)	139, 564, 1208, 1521, 1758, 2263, 2507
BsaWI	WCCGGW	5 cut(s)	479, 778, 2659, 3110, 3122
BsaXI	ACNNNNNCTCC	2 cut(s)	619, 649
Bsc4I	CCNNNNNNNGG	9 cut(s)	278, 644, 767, 1528, 1877, 2404, 2794, 3068, 3069
Bse118I	RCCGGY	2 cut(s)	479, 3110
Bse3DI	GCAATG	3 cut(s)	1477, 2676, 3164
Bse8I	GATNNNNATC	1 cut(s)	2157
BseBI	CCWGG	4 cut(s)	140, 1287, 1523, 1584
BseCI	ATCGAT	2 cut(s)	291, 462
BseDI	CCNNGG	7 cut(s)	139, 564, 1208, 1521, 1758, 2263, 2507
BseJI	GATNNNNATC	1 cut(s)	2157
BseLI	CCNNNNNNNGG	9 cut(s)	278, 644, 767, 1528, 1877, 2404, 2794, 3068, 3069
BseMI	GCAATG	3 cut(s)	1477, 2676, 3164
BseMII	CTCAG	4 cut(s)	780, 878, 1583, 2921
BseRI	GAGGAG	3 cut(s)	907, 2068, 2510
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	5 cut(s)	1850, 2128, 2281, 2294, 2903
BseYI	CCCAGC	3 cut(s)	325, 1426, 1535
Bsh1236I	CGCG	4 cut(s)	37, 39, 236, 2107
BshFI	GGCC	9 cut(s)	46, 287, 536, 843, 987, 1425, 2506, 2929, 2951
BshNI	GGYRCC	4 cut(s)	244, 296, 2192, 2656
BshTI	ACCGGT	2 cut(s)	479, 3110
BshVI	ATCGAT	2 cut(s)	291, 462
BsiHKAI	GWGCWC	1 cut(s)	917
BsiHKCI	CYCGRG	2 cut(s)	1959, 2628
BsiSI	CCGG	6 cut(s)	480, 779, 2660, 2772, 3111, 3123
BslFI	GGGAC	5 cut(s)	245, 468, 1870, 2653, 2691
BslI	CCNNNNNNNGG	9 cut(s)	278, 644, 767, 1528, 1877, 2404, 2794, 3068, 3069
BsmAI	GTCTC	6 cut(s)	1616, 2008, 2737, 2839, 2943, 3147
BsmFI	GGGAC	5 cut(s)	245, 468, 1870, 2653, 2691
BsnI	GGCC	9 cut(s)	46, 287, 536, 843, 987, 1425, 2506, 2929, 2951
Bso31I	GGTCTC	2 cut(s)	1616, 2737
BsoBI	CYCGRG	2 cut(s)	1959, 2628
Bsp1286I	GDGCHC	2 cut(s)	249, 917
Bsp143I	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
Bsp19I	CCATGG	1 cut(s)	1208
BspACI	CCGC	5 cut(s)	242, 988, 2105, 2674, 2926
BspANI	GGCC	9 cut(s)	46, 287, 536, 843, 987, 1425, 2506, 2929, 2951
BspCNI	CTCAG	4 cut(s)	779, 877, 1584, 2920
BspDI	ATCGAT	2 cut(s)	291, 462
BspFNI	CGCG	4 cut(s)	37, 39, 236, 2107
BspHI	TCATGA	1 cut(s)	2491
BspMAI	CTGCAG	1 cut(s)	2308
BspMI	ACCTGC	3 cut(s)	374, 1757, 1868
BspPI	GGATC	4 cut(s)	289, 1594, 2834, 2847
BspQI	GCTCTTC	1 cut(s)	1964
BspT107I	GGYRCC	4 cut(s)	244, 296, 2192, 2656
BspTI	CTTAAG	1 cut(s)	581
BspTNI	GGTCTC	2 cut(s)	1616, 2737
BsrDI	GCAATG	3 cut(s)	1477, 2676, 3164
BsrFI	RCCGGY	2 cut(s)	479, 3110
BssAI	RCCGGY	2 cut(s)	479, 3110
BssECI	CCNNGG	7 cut(s)	139, 564, 1208, 1521, 1758, 2263, 2507
BssMI	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
BssNI	GRCGYC	1 cut(s)	2193
BssSI	CACGAG	1 cut(s)	2940
BssT1I	CCWWGG	5 cut(s)	564, 1208, 1758, 2263, 2507
Bst2BI	CACGAG	1 cut(s)	2940
Bst2UI	CCWGG	4 cut(s)	140, 1287, 1523, 1584
Bst4CI	ACNGT	9 cut(s)	344, 356, 758, 1361, 1633, 1889, 1906, 1936, 2334
Bst6I	CTCTTC	2 cut(s)	1964, 2264
BstACI	GRCGYC	1 cut(s)	2193
BstAFI	CTTAAG	1 cut(s)	581
BstAPI	GCANNNNNTGC	3 cut(s)	366, 1532, 2291
BstC8I	GCNNGC	3 cut(s)	240, 2024, 2958
BstDEI	CTNAG	5 cut(s)	766, 864, 1592, 2735, 2907
BstDSI	CCRYGG	1 cut(s)	1208
BstEII	GGTNACC	1 cut(s)	1213
BstENI	CCTNNNNNAGG	4 cut(s)	765, 1526, 1875, 2402
BstFNI	CGCG	4 cut(s)	37, 39, 236, 2107
BstH2I	RGCGCY	2 cut(s)	671, 2196
BstHHI	GCGC	4 cut(s)	39, 238, 670, 2195
BstKTI	GATC	7 cut(s)	284, 466, 1156, 1589, 1669, 2404, 2842
BstMAI	GTCTC	6 cut(s)	1616, 2008, 2737, 2839, 2943, 3147
BstMBI	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
BstNI	CCWGG	4 cut(s)	140, 1287, 1523, 1584
BstPI	GGTNACC	1 cut(s)	1213
BstSCI	CCNGG	4 cut(s)	138, 1285, 1521, 1582
BstSFI	CTRYAG	3 cut(s)	343, 2250, 2304
BstSLI	GKGCMC	1 cut(s)	249
BstUI	CGCG	4 cut(s)	37, 39, 236, 2107
BstV1I	GCAGC	5 cut(s)	1850, 2128, 2281, 2294, 2903
BstV2I	GAAGAC	2 cut(s)	1151, 1193
BstX2I	RGATCY	1 cut(s)	2839
BstXI	CCANNNNNNTGG	1 cut(s)	1509
BstYI	RGATCY	1 cut(s)	2839
Bsu15I	ATCGAT	2 cut(s)	291, 462
BsuRI	GGCC	9 cut(s)	46, 287, 536, 843, 987, 1425, 2506, 2929, 2951
BsuTUI	ATCGAT	2 cut(s)	291, 462
BtgI	CCRYGG	1 cut(s)	1208
BtgZI	GCGATG	1 cut(s)	2300
BtsI	GCAGTG	5 cut(s)	47, 165, 283, 629, 2313
BveI	ACCTGC	3 cut(s)	374, 1757, 1868
Cac8I	GCNNGC	3 cut(s)	240, 2024, 2958
CaiI	CAGNNNCTG	1 cut(s)	2006
CciI	TCATGA	1 cut(s)	2491
CfoI	GCGC	4 cut(s)	39, 238, 670, 2195
Cfr10I	RCCGGY	2 cut(s)	479, 3110
ClaI	ATCGAT	2 cut(s)	291, 462
CseI	GACGC	2 cut(s)	242, 529
Csp6I	GTAC	3 cut(s)	1449, 2516, 2904
CspAI	ACCGGT	2 cut(s)	479, 3110
CspCI	CAANNNNNGTGG	2 cut(s)	180, 215
CviQI	GTAC	3 cut(s)	1449, 2516, 2904
DdeI	CTNAG	5 cut(s)	766, 864, 1592, 2735, 2907
DinI	GGCGCC	1 cut(s)	2194
DpnI	GATC	7 cut(s)	283, 465, 1155, 1588, 1668, 2403, 2841
DpnII	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
DraI	TTTAAA	2 cut(s)	1023, 1927
DrdI	GACNNNNNNGTC	1 cut(s)	526
DseDI	GACNNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	4 cut(s)	285, 985, 2927, 2949
Eam1104I	CTCTTC	2 cut(s)	1964, 2264
EarI	CTCTTC	2 cut(s)	1964, 2264
Ecl136II	GAGCTC	1 cut(s)	915
Eco130I	CCWWGG	5 cut(s)	564, 1208, 1758, 2263, 2507
Eco24I	GRGCYC	1 cut(s)	917
Eco31I	GGTCTC	2 cut(s)	1616, 2737
Eco32I	GATATC	2 cut(s)	901, 1714
Eco47I	GGWCC	8 cut(s)	187, 310, 482, 554, 1367, 1622, 1857, 1889
Eco47III	AGCGCT	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	915
Eco57I	CTGAAG	3 cut(s)	441, 1760, 2238
Eco88I	CYCGRG	2 cut(s)	1959, 2628
Eco91I	GGTNACC	1 cut(s)	1213
EcoICRI	GAGCTC	1 cut(s)	915
EcoNI	CCTNNNNNAGG	4 cut(s)	765, 1526, 1875, 2402
EcoO109I	RGGNCCY	2 cut(s)	310, 1857
EcoO65I	GGTNACC	1 cut(s)	1213
EcoRI	GAATTC	2 cut(s)	829, 880
EcoRII	CCWGG	4 cut(s)	138, 1285, 1521, 1582
EcoRV	GATATC	2 cut(s)	901, 1714
EcoT14I	CCWWGG	5 cut(s)	564, 1208, 1758, 2263, 2507
EcoT22I	ATGCAT	1 cut(s)	976
EcoT38I	GRGCYC	1 cut(s)	917
EgeI	GGCGCC	1 cut(s)	2194
EheI	GGCGCC	1 cut(s)	2194
ErhI	CCWWGG	5 cut(s)	564, 1208, 1758, 2263, 2507
FalI	AAGNNNNNCTT	2 cut(s)	2878, 2910
FaqI	GGGAC	5 cut(s)	245, 468, 1870, 2653, 2691
FauI	CCCGC	2 cut(s)	2112, 2667
FbaI	TGATCA	1 cut(s)	2401
Fnu4HI	GCNGC	7 cut(s)	988, 1864, 2142, 2283, 2295, 2892, 2927
FriOI	GRGCYC	1 cut(s)	917
Fsp4HI	GCNGC	7 cut(s)	988, 1864, 2142, 2283, 2295, 2892, 2927
FspBI	CTAG	5 cut(s)	8, 1140, 1733, 2174, 2324
GlaI	GCGC	4 cut(s)	38, 237, 669, 2194
GluI	GCNGC	7 cut(s)	988, 1864, 2142, 2283, 2295, 2892, 2927
GsaI	CCCAGC	3 cut(s)	329, 1430, 1539
GsuI	CTGGAG	4 cut(s)	1149, 1566, 1598, 2982
HaeII	RGCGCY	2 cut(s)	671, 2196
HaeIII	GGCC	9 cut(s)	46, 287, 536, 843, 987, 1425, 2506, 2929, 2951
HapII	CCGG	6 cut(s)	480, 779, 2660, 2772, 3111, 3123
HgaI	GACGC	2 cut(s)	242, 529
HhaI	GCGC	4 cut(s)	39, 238, 670, 2195
Hin1I	GRCGYC	1 cut(s)	2193
Hin6I	GCGC	4 cut(s)	37, 236, 668, 2193
HinP1I	GCGC	4 cut(s)	37, 236, 668, 2193
HincII	GTYRAC	4 cut(s)	519, 870, 1061, 1246
HindII	GTYRAC	4 cut(s)	519, 870, 1061, 1246
HindIII	AAGCTT	1 cut(s)	2594
HpaII	CCGG	6 cut(s)	480, 779, 2660, 2772, 3111, 3123
HphI	GGTGA	7 cut(s)	469, 710, 1892, 1996, 2252, 3065, 3071
Hpy166II	GTNNAC	9 cut(s)	519, 689, 870, 1061, 1246, 1807, 1892, 2200, 2904
Hpy8I	GTNNAC	9 cut(s)	519, 689, 870, 1061, 1246, 1807, 1892, 2200, 2904
HpyAV	CCTTC	9 cut(s)	94, 833, 1005, 1310, 1692, 1735, 2345, 3182, 3186
HpyCH4III	ACNGT	9 cut(s)	344, 356, 758, 1361, 1633, 1889, 1906, 1936, 2334
HpyCH4IV	ACGT	3 cut(s)	31, 1809, 2117
HpyF3I	CTNAG	5 cut(s)	766, 864, 1592, 2735, 2907
HpySE526I	ACGT	3 cut(s)	31, 1809, 2117
Hsp92I	GRCGYC	1 cut(s)	2193
HspAI	GCGC	4 cut(s)	37, 236, 668, 2193
KasI	GGCGCC	1 cut(s)	2192
Ksp22I	TGATCA	1 cut(s)	2401
Kzo9I	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
LguI	GCTCTTC	1 cut(s)	1964
LmnI	GCTCC	3 cut(s)	11, 568, 920
Lsp1109I	GCAGC	5 cut(s)	1850, 2128, 2281, 2294, 2903
MaeI	CTAG	5 cut(s)	8, 1140, 1733, 2174, 2324
MaeII	ACGT	3 cut(s)	31, 1809, 2117
MaeIII	GTNAC	7 cut(s)	414, 979, 1070, 1213, 1441, 1546, 3028
MalI	GATC	7 cut(s)	283, 465, 1155, 1588, 1668, 2403, 2841
MboI	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	2839
MhlI	GDGCHC	2 cut(s)	249, 917
MlsI	TGGCCA	1 cut(s)	2951
MluNI	TGGCCA	1 cut(s)	2951
Mly113I	GGCGCC	1 cut(s)	2193
MlyI	GAGTC	5 cut(s)	13, 2281, 2507, 2797, 3070
MmeI	TCCRAC	3 cut(s)	1521, 1794, 1990
Mox20I	TGGCCA	1 cut(s)	2951
Mph1103I	ATGCAT	1 cut(s)	976
MroXI	GAANNNNTTC	3 cut(s)	31, 473, 2088
MscI	TGGCCA	1 cut(s)	2951
MslI	CAYNNNNRTG	1 cut(s)	2523
Msp20I	TGGCCA	1 cut(s)	2951
MspA1I	CMGCKG	2 cut(s)	242, 684
MspCI	CTTAAG	1 cut(s)	581
MspI	CCGG	6 cut(s)	480, 779, 2660, 2772, 3111, 3123
MspR9I	CCNGG	4 cut(s)	140, 1287, 1523, 1584
MunI	CAATTG	1 cut(s)	380
MvaI	CCWGG	4 cut(s)	140, 1287, 1523, 1584
MvnI	CGCG	4 cut(s)	37, 39, 236, 2107
NarI	GGCGCC	1 cut(s)	2193
NcoI	CCATGG	1 cut(s)	1208
NdeII	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
NmuCI	GTSAC	3 cut(s)	979, 1070, 1546
NsiI	ATGCAT	1 cut(s)	976
PaeR7I	CTCGAG	1 cut(s)	1959
PagI	TCATGA	1 cut(s)	2491
PaqCI	CACCTGC	2 cut(s)	374, 1757
PciSI	GCTCTTC	1 cut(s)	1964
PcsI	WCGNNNNNNNCGW	1 cut(s)	527
PdmI	GAANNNNTTC	3 cut(s)	31, 473, 2088
PfeI	GAWTC	5 cut(s)	891, 1498, 1945, 2448, 3151
PflMI	CCANNNNNTGG	1 cut(s)	278
PfoI	TCCNGGA	2 cut(s)	1285, 1582
PinAI	ACCGGT	2 cut(s)	479, 3110
PkrI	GCNGC	7 cut(s)	989, 1865, 2143, 2284, 2296, 2893, 2928
PleI	GAGTC	5 cut(s)	12, 2280, 2506, 2797, 3070
PluTI	GGCGCC	1 cut(s)	2196
PpsI	GAGTC	5 cut(s)	12, 2280, 2506, 2797, 3070
PpuMI	RGGWCCY	2 cut(s)	310, 1857
PshBI	ATTAAT	1 cut(s)	2030
PsiI	TTATAA	1 cut(s)	1182
Psp124BI	GAGCTC	1 cut(s)	917
Psp5II	RGGWCCY	2 cut(s)	310, 1857
Psp6I	CCWGG	4 cut(s)	138, 1285, 1521, 1582
PspEI	GGTNACC	1 cut(s)	1213
PspFI	CCCAGC	3 cut(s)	325, 1426, 1535
PspGI	CCWGG	4 cut(s)	138, 1285, 1521, 1582
PspPPI	RGGWCCY	2 cut(s)	310, 1857
PspXI	VCTCGAGB	1 cut(s)	1959
PstI	CTGCAG	1 cut(s)	2308
PstNI	CAGNNNCTG	1 cut(s)	2006
PsuI	RGATCY	1 cut(s)	2839
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	3 cut(s)	1450, 2517, 2905
RsaNI	GTAC	3 cut(s)	1449, 2516, 2904
RseI	CAYNNNNRTG	1 cut(s)	2523
SacI	GAGCTC	1 cut(s)	917
SapI	GCTCTTC	1 cut(s)	1964
SatI	GCNGC	7 cut(s)	988, 1864, 2142, 2283, 2295, 2892, 2927
Sau3AI	GATC	7 cut(s)	281, 463, 1153, 1586, 1666, 2401, 2839
SchI	GAGTC	5 cut(s)	13, 2281, 2507, 2797, 3070
ScrFI	CCNGG	4 cut(s)	140, 1287, 1523, 1584
SduI	GDGCHC	2 cut(s)	249, 917
SfcI	CTRYAG	3 cut(s)	343, 2250, 2304
SfoI	GGCGCC	1 cut(s)	2194
Sfr274I	CTCGAG	1 cut(s)	1959
SinI	GGWCC	8 cut(s)	187, 310, 482, 554, 1367, 1622, 1857, 1889
SlaI	CTCGAG	1 cut(s)	1959
SmiI	ATTTAAAT	1 cut(s)	1023
SmiMI	CAYNNNNRTG	1 cut(s)	2523
SmlI	CTYRAG	3 cut(s)	581, 814, 1959
SmoI	CTYRAG	3 cut(s)	581, 814, 1959
SsiI	CCGC	5 cut(s)	242, 988, 2105, 2674, 2926
SspDI	GGCGCC	1 cut(s)	2192
SspI	AATATT	2 cut(s)	2034, 2542
SspMI	CTAG	5 cut(s)	8, 1140, 1733, 2174, 2324
SstI	GAGCTC	1 cut(s)	917
StyD4I	CCNGG	4 cut(s)	138, 1285, 1521, 1582
StyI	CCWWGG	5 cut(s)	564, 1208, 1758, 2263, 2507
SwaI	ATTTAAAT	1 cut(s)	1023
TaaI	ACNGT	9 cut(s)	344, 356, 758, 1361, 1633, 1889, 1906, 1936, 2334
TaiI	ACGT	3 cut(s)	34, 1812, 2120
TaqI	TCGA	7 cut(s)	291, 306, 462, 530, 663, 1960, 2501
TaqII	GACCGA	1 cut(s)	2761
TatI	WGTACW	3 cut(s)	1448, 2515, 2903
TauI	GCSGC	2 cut(s)	990, 2929
TfiI	GAWTC	5 cut(s)	891, 1498, 1945, 2448, 3151
TseFI	GTSAC	3 cut(s)	979, 1070, 1546
TseI	GCWGC	5 cut(s)	1863, 2141, 2282, 2294, 2891
Tsp45I	GTSAC	3 cut(s)	979, 1070, 1546
TspGWI	ACGGA	1 cut(s)	200
Van91I	CCANNNNNTGG	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	8 cut(s)	187, 310, 482, 554, 1367, 1622, 1857, 1889
VspI	ATTAAT	1 cut(s)	2030
XagI	CCTNNNNNAGG	4 cut(s)	765, 1526, 1875, 2402
XapI	RAATTY	9 cut(s)	58, 702, 829, 880, 937, 1018, 1309, 1830, 2364
XbaI	TCTAGA	1 cut(s)	1732
XhoI	CTCGAG	1 cut(s)	1959
XmnI	GAANNNNTTC	3 cut(s)	31, 473, 2088
XspI	CTAG	5 cut(s)	8, 1140, 1733, 2174, 2324
Zsp2I	ATGCAT	1 cut(s)	976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.