Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003560

Physical Location & Seq

Genomic Coordinates Forward (+)

27009979 .. 27011810

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG236700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTCGCGTCATCAGAGCTCAGCGTAAGGGAGCGGGCTCCGTCTTCAAGTCCCACACCCACCACCGCAAGGGCCCGGCCCGCTTCCGCTCCCTCGACTACGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGACATCATCCACGACCCCGGTCGCGGTGCCCCGCTCGCTCGCGTCAGCTTCCGTCATCCTTTCCGGTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCCGAGGGGCTCTACACCGGCCAGTTTATTTACTGCGGGAAGAAGGCCAATTTGGTCGTCGGAAATGTGTTGCCGGTCAGATCTATTCCCGAGGGAGCTGTGGTGTGTAATGTCGAGCACCACGTCGGCGACCGCGGAACCCTAGCTAGGGCTTCGGGGGATTACGCTGTGATTATCAGTCACAACCCTGATAATGATACCTCAAGAATCAAGCTTCCTTCTGGTGCCAAGAAGATTGTTCCAAGTGGTTGCCGTGCCATGATTGGTCAAGTTGCAGGTGGAGGCAGAACTGAGAAGCCTATGCTCAAGGCCGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAATCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGTCATGCTAGCACAGTCAGGCGTGATGCTCCTCCTGGGCAGAAGGTTGGTCTTATTGCTGCCAGGAGAACTGGTCGTCTCAGAGGACAAGCTGCTGCGACTGCCTCCAAGGAGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

259

Amino Acids

28.04

Weight (kDa)

10.81

Isoelectric Point (pI)

24.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L2_N	PF00181	2 - 90	3.3e-22	Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C	PF03947	98 - 224	1.3e-45	Ribosomal Proteins L2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18020 AT3G51190 AT4G36130
fragaria_vesca	FvH4_3g11370 FvH4_3g11370 FvH4_3g19850
malus_domestica	MD05G1264000.v1.1 MD10G1241900.v1.1
prunus_persica	Prupe.1G202200_v2.0.a1 Prupe.4G101600_v2.0.a1
pyrus_communis	pycom05g24810 pycom10g20260 pycom10g20270
rosa_chinensis	RchiOBHm_Chr5g0018321 RchiOBHm_Chr5g0033291
rosa_laevigata	RLG00000032351 RLG00000033468
rosa_multiflora	Rmu_co8428655.1_g000001 Rmu_sc0002206.1_g000007 Rmu_sc0005702.1_g000002 Rmu_sc0009715.1_g000002 Rmu_sc0011919.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046690
rosa_rugosa	Rorug05G0041300 Rorug05G0139200
rosa_samantha	Rh5AG134500 Rh5AG230600 Rh5BG133300 Rh5BG231600 Rh5CG145000 Rh5CG260300 Rh5DG134700 Rh5DG236700
rosa_wichuraiana	Rw5G011760 Rw5G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	500
Acc36I	ACCTGC	1 cut(s)	500
AccB1I	GGYRCC	2 cut(s)	164, 458
AccBSI	CCGCTC	3 cut(s)	35, 90, 172
AccII	CGCG	4 cut(s)	9, 162, 180, 369
AcoI	YGGCCR	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	6 cut(s)	70, 161, 240, 381, 382, 635
AgsI	TTSAA	1 cut(s)	49
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	691, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	7 cut(s)	20, 186, 223, 332, 380, 448, 749
AluI	AGCT	7 cut(s)	20, 186, 223, 332, 380, 448, 749
Alw21I	GWGCWC	3 cut(s)	22, 225, 354
Alw26I	GTCTC	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	6 cut(s)	73, 78, 253, 279, 543, 587
ApaI	GGGCCC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	716, 749, 752
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	3 cut(s)	73, 74, 79
AsuC2I	CCSGG	2 cut(s)	77, 156
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	665
AvaI	CYCGRG	1 cut(s)	323
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	2 cut(s)	77, 169
BanI	GGYRCC	2 cut(s)	164, 458
BanII	GRGCYC	5 cut(s)	22, 41, 77, 225, 246
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	3 cut(s)	22, 225, 354
BbvI	GCAGC	3 cut(s)	703, 736, 739
BceAI	ACGGC	3 cut(s)	118, 130, 471
BciT130I	CCWGG	2 cut(s)	693, 721
BcnI	CCSGG	2 cut(s)	77, 156
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	3 cut(s)	377, 381, 666
BfuAI	ACCTGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	4 cut(s)	234, 717, 750, 753
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	4 cut(s)	235, 718, 751, 754
Bme1390I	CCNGG	4 cut(s)	77, 156, 693, 721
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	73, 74, 79
BmiI	GGNNCC	5 cut(s)	40, 75, 166, 373, 460
BmrFI	CCNGG	4 cut(s)	77, 156, 693, 721
BmsI	GCATC	2 cut(s)	634, 673
BmtI	GCTAGC	1 cut(s)	669
BoxI	GACNNNNGTC	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	21
BpuEI	CTTGAG	3 cut(s)	107, 421, 524
BpuMI	CCSGG	2 cut(s)	77, 156
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	6 cut(s)	154, 237, 324, 367, 692, 765
BsaWI	WCCGGW	1 cut(s)	201
BsaXI	ACNNNNNCTCC	4 cut(s)	321, 351, 715, 745
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 161, 240, 381, 382, 635
Bse118I	RCCGGY	3 cut(s)	251, 307, 545
Bse1I	ACTGG	2 cut(s)	256, 733
Bse21I	CCTNAGG	1 cut(s)	591
BseBI	CCWGG	2 cut(s)	693, 721
BseDI	CCNNGG	6 cut(s)	154, 237, 324, 367, 692, 765
BseGI	GGATG	3 cut(s)	144, 193, 625
BseLI	CCNNNNNNNGG	6 cut(s)	70, 161, 240, 381, 382, 635
BseMII	CTCAG	3 cut(s)	35, 516, 751
BseNI	ACTGG	2 cut(s)	256, 733
BseRI	GAGGAG	2 cut(s)	651, 678
BseSI	GKGCMC	2 cut(s)	77, 169
BseXI	GCAGC	3 cut(s)	703, 736, 739
Bsh1236I	CGCG	4 cut(s)	9, 162, 180, 369
Bsh1285I	CGRYCG	2 cut(s)	160, 367
BshFI	GGCC	6 cut(s)	75, 80, 255, 281, 545, 589
BshNI	GGYRCC	2 cut(s)	164, 458
BsiEI	CGRYCG	2 cut(s)	160, 367
BsiHKAI	GWGCWC	3 cut(s)	22, 225, 354
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	6 cut(s)	77, 156, 202, 252, 308, 546
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	6 cut(s)	70, 161, 240, 381, 382, 635
BsmAI	GTCTC	1 cut(s)	740
BsmBI	CGTCTC	1 cut(s)	740
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	6 cut(s)	75, 80, 255, 281, 545, 589
BsoBI	CYCGRG	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	73
Bsp1286I	GDGCHC	7 cut(s)	22, 41, 77, 169, 225, 246, 354
Bsp143I	GATC	1 cut(s)	314
Bsp1720I	GCTNAGC	1 cut(s)	21
BspANI	GGCC	6 cut(s)	75, 80, 255, 281, 545, 589
BspCNI	CTCAG	3 cut(s)	34, 517, 750
BspFNI	CGCG	4 cut(s)	9, 162, 180, 369
BspLI	GGNNCC	5 cut(s)	40, 75, 166, 373, 460
BspMI	ACCTGC	1 cut(s)	500
BspOI	GCTAGC	1 cut(s)	669
BspQI	GCTCTTC	1 cut(s)	230
BspT107I	GGYRCC	2 cut(s)	164, 458
BsrBI	CCGCTC	3 cut(s)	35, 90, 172
BsrFI	RCCGGY	3 cut(s)	251, 307, 545
BsrI	ACTGG	2 cut(s)	256, 733
BssAI	RCCGGY	3 cut(s)	251, 307, 545
BssECI	CCNNGG	6 cut(s)	154, 237, 324, 367, 692, 765
BssMI	GATC	1 cut(s)	314
BssNI	GRCGYC	1 cut(s)	129
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	2 cut(s)	693, 721
Bst4CI	ACNGT	1 cut(s)	673
Bst6I	CTCTTC	2 cut(s)	230, 569
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	7 cut(s)	37, 82, 107, 174, 178, 587, 667
BstDEI	CTNAG	5 cut(s)	21, 525, 591, 737, 777
BstDSI	CCRYGG	1 cut(s)	367
BstEII	GGTNACC	1 cut(s)	641
BstENI	CCTNNNNNAGG	1 cut(s)	633
BstF5I	GGATG	3 cut(s)	144, 193, 625
BstFNI	CGCG	4 cut(s)	9, 162, 180, 369
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	317
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	1 cut(s)	314
BstMCI	CGRYCG	2 cut(s)	160, 367
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 173, 220, 551, 595, 758
BstNI	CCWGG	2 cut(s)	693, 721
BstPAI	GACNNNNGTC	1 cut(s)	156
BstPI	GGTNACC	1 cut(s)	641
BstSCI	CCNGG	4 cut(s)	75, 154, 691, 719
BstSLI	GKGCMC	2 cut(s)	77, 169
BstUI	CGCG	4 cut(s)	9, 162, 180, 369
BstV1I	GCAGC	3 cut(s)	703, 736, 739
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	314
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	6 cut(s)	75, 80, 255, 281, 545, 589
BtgI	CCRYGG	1 cut(s)	367
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	144, 193, 625
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	7 cut(s)	37, 82, 107, 174, 178, 587, 667
CfoI	GCGC	1 cut(s)	111
Cfr10I	RCCGGY	3 cut(s)	251, 307, 545
Cfr13I	GGNCC	3 cut(s)	73, 74, 79
Cfr42I	CCGCGG	1 cut(s)	370
CseI	GACGC	2 cut(s)	118, 169
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	493, 662
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	5 cut(s)	21, 525, 591, 737, 777
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	230, 569
EarI	CTCTTC	2 cut(s)	230, 569
Ecl136II	GAGCTC	2 cut(s)	20, 223
Eco130I	CCWWGG	1 cut(s)	765
Eco24I	GRGCYC	5 cut(s)	22, 41, 77, 225, 246
Eco53kI	GAGCTC	2 cut(s)	20, 223
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	641
EcoICRI	GAGCTC	2 cut(s)	20, 223
EcoNI	CCTNNNNNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	73
EcoO65I	GGTNACC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	691, 719
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	5 cut(s)	22, 41, 77, 225, 246
ErhI	CCWWGG	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	740
FaeI	CATG	2 cut(s)	496, 665
FaiI	YATR	5 cut(s)	494, 536, 611, 654, 663
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	2 cut(s)	492, 661
FauI	CCCGC	4 cut(s)	28, 89, 177, 263
Fnu4HI	GCNGC	4 cut(s)	234, 717, 750, 753
FokI	GGATG	3 cut(s)	131, 180, 612
FriOI	GRGCYC	5 cut(s)	22, 41, 77, 225, 246
Fsp4HI	GCNGC	4 cut(s)	234, 717, 750, 753
FspBI	CTAG	3 cut(s)	377, 381, 666
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	234, 717, 750, 753
HaeIII	GGCC	6 cut(s)	75, 80, 255, 281, 545, 589
HapII	CCGG	6 cut(s)	77, 156, 202, 252, 308, 546
HgaI	GACGC	2 cut(s)	118, 169
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	496, 665
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	441, 613
HpaII	CCGG	6 cut(s)	77, 156, 202, 252, 308, 546
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	17, 296, 314, 569, 740
Hpy188III	TCNNGA	2 cut(s)	323, 438
Hpy99I	CGWCG	4 cut(s)	134, 233, 296, 362
HpyAV	CCTTC	4 cut(s)	271, 462, 694, 766
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 173, 220, 551, 595, 758
HpyF3I	CTNAG	5 cut(s)	21, 525, 591, 737, 777
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	496, 665
HspAI	GCGC	1 cut(s)	109
KspI	CCGCGG	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	314
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	5 cut(s)	32, 44, 95, 329, 691
Lsp1109I	GCAGC	3 cut(s)	703, 736, 739
LweI	GCATC	2 cut(s)	634, 673
MaeI	CTAG	3 cut(s)	377, 381, 666
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	3 cut(s)	133, 413, 641
MalI	GATC	1 cut(s)	316
MbiI	CCGCTC	3 cut(s)	35, 90, 172
MboI	GATC	1 cut(s)	314
MboII	GAAGA	5 cut(s)	37, 217, 286, 478, 586
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	7 cut(s)	22, 41, 77, 169, 225, 246, 354
MluCI	AATT	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	274
MspA1I	CMGCKG	1 cut(s)	369
MspI	CCGG	6 cut(s)	77, 156, 202, 252, 308, 546
MspR9I	CCNGG	4 cut(s)	77, 156, 693, 721
MvaI	CCWGG	2 cut(s)	693, 721
MvnI	CGCG	4 cut(s)	9, 162, 180, 369
MwoI	GCNNNNNNNGC	6 cut(s)	81, 173, 220, 551, 595, 758
NciI	CCSGG	2 cut(s)	77, 156
NdeII	GATC	1 cut(s)	314
NheI	GCTAGC	1 cut(s)	665
NlaIII	CATG	2 cut(s)	496, 665
NlaIV	GGNNCC	5 cut(s)	40, 75, 166, 373, 460
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	133, 413
PaqCI	CACCTGC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	4 cut(s)	102, 225, 234, 354
PfeI	GAWTC	2 cut(s)	441, 613
PkrI	GCNGC	4 cut(s)	235, 718, 751, 754
PshAI	GACNNNNGTC	1 cut(s)	156
Psp124BI	GAGCTC	2 cut(s)	22, 225
Psp6I	CCWGG	2 cut(s)	691, 719
PspEI	GGTNACC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	691, 719
PspN4I	GGNNCC	5 cut(s)	40, 75, 166, 373, 460
PspOMI	GGGCCC	1 cut(s)	73
PspPI	GGNCC	3 cut(s)	73, 74, 79
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	2 cut(s)	22, 225
SacII	CCGCGG	1 cut(s)	370
SapI	GCTCTTC	1 cut(s)	230
SatI	GCNGC	4 cut(s)	234, 717, 750, 753
Sau3AI	GATC	1 cut(s)	314
Sau96I	GGNCC	3 cut(s)	73, 74, 79
ScrFI	CCNGG	4 cut(s)	77, 156, 693, 721
SduI	GDGCHC	7 cut(s)	22, 41, 77, 169, 225, 246, 354
SfaNI	GCATC	2 cut(s)	634, 673
Sfr303I	CCGCGG	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	370
SmlI	CTYRAG	3 cut(s)	122, 436, 539
SmoI	CTYRAG	3 cut(s)	122, 436, 539
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	3 cut(s)	377, 381, 666
SstI	GAGCTC	2 cut(s)	22, 225
StyD4I	CCNGG	4 cut(s)	75, 154, 691, 719
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	96, 348
TasI	AATT	1 cut(s)	283
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	2 cut(s)	441, 613
TseFI	GTSAC	2 cut(s)	133, 413
TseI	GCWGC	3 cut(s)	716, 749, 752
Tsp45I	GTSAC	2 cut(s)	133, 413
TspDTI	ATGAA	1 cut(s)	626
TspGWI	ACGGA	3 cut(s)	31, 179, 648
XagI	CCTNNNNNAGG	1 cut(s)	633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	653
XspI	CTAG	3 cut(s)	377, 381, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.