pycom05g24810

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
26313619 .. 26315792
2174 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g24810.2

Sequence Viewer

Length: 867 bp
ATGTCATATTATTTCACGTTAGGCCTAGGGTTTTTGGAACACCATTTCGCGCGGCCGCTAGTAGCAGAAAATCACTCGCCGGAGCCATGGGGAGGGTTATCAGAGCTCAGCGTAAGGGTGCGGGTTCCGTTTTCAAGTCGCACACCCACCACCGCAAGGGTCCTGCCCGCTTCCGGAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGTGTCGTCACCGAGATCGATCCTCGATCCTGGTCGCGGTGCCCCGTTGGCCCGCGTCAGCTTCCGCCATCCGTTTAGGTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCCGAGGGAATCTACACCGGTCAGTTCATCTACTGCGGGAAGAAGGCCAATTTGGTGGTCGGAAATGTGTTGCCTCTCAGATCGATCCCGGAGGGAGCCGTCGTCTGTAACGTCGAGCACCATGTTGGGGACCGCGGAACCCTCGCTAGGGCGTCTGGTGATTACGCTGTTGTTATCAGCCACAACCCTGACAACGATACCTCCAGGATCAAGCTTCCGTCTGGAGCCAAGAAGATTGTTCCCAGCGGATGCCGTGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAAAAGCCAATGCTCAAGGCTGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCCAAGGTTCGTGGTGTGGCTATGAACCCAGTCGAGCATCCTCACGGAGGAGGTAATCACCAGCATATTGGACATGCTAGCACAGTCAGGCGTGATGCTCCTCCTGGGCAGAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTCAGAGGACAAGCTGCTGCGAACATATCTAAGGCAGACAAGTGA

Protein Analysis

289

Amino Acids

30.88

Weight (kDa)

10.65

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 587
Acc36I ACCTGC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 251
AccII CGCG 5 cut(s) 50, 52, 249, 267, 456
AccIII TCCGGA 1 cut(s) 173
AclWI GGATC 4 cut(s) 226, 233, 400, 536
AcoI YGGCCR 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 473
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 8 cut(s) 92, 156, 173, 248, 448, 468, 469, 722
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 1 cut(s) 135
AhdI GACNNNNNGTC 1 cut(s) 819
AjnI CCWGG 3 cut(s) 241, 524, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 5 cut(s) 106, 273, 310, 535, 836
AluI AGCT 5 cut(s) 106, 273, 310, 535, 836
Alw21I GWGCWC 3 cut(s) 108, 312, 441
Alw26I GTCTC 2 cut(s) 800, 827
AlwI GGATC 4 cut(s) 226, 233, 400, 536
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 5 cut(s) 22, 53, 261, 366, 674
ApeKI GCWGC 3 cut(s) 803, 836, 839
AsiGI ACCGGT 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 2 cut(s) 52, 197
AspS9I GGNCC 4 cut(s) 160, 262, 451, 675
AsuC2I CCSGG 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 213, 491, 725
AsuNHI GCTAGC 1 cut(s) 752
AvaII GGWCC 2 cut(s) 160, 451
AvrII CCTAGG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 2 cut(s) 108, 312
Bbv12I GWGCWC 3 cut(s) 108, 312, 441
BbvI GCAGC 3 cut(s) 790, 823, 826
BccI CCATC 1 cut(s) 288
BceAI ACGGC 3 cut(s) 216, 404, 558
BciT130I CCWGG 3 cut(s) 243, 526, 780
BcnI CCSGG 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 800, 827
BfaI CTAG 5 cut(s) 26, 59, 468, 753, 807
BfuAI ACCTGC 1 cut(s) 587
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 6 cut(s) 53, 56, 321, 804, 837, 840
BlnI CCTAGG 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 6 cut(s) 54, 57, 322, 805, 838, 841
Bme1390I CCNGG 4 cut(s) 243, 410, 526, 780
Bme18I GGWCC 2 cut(s) 160, 451
BmeRI GACNNNNNGTC 1 cut(s) 819
BmgT120I GGNCC 4 cut(s) 160, 262, 451, 675
BmiI GGNNCC 9 cut(s) 84, 126, 161, 178, 253, 418, 452, 460, 547
BmrFI CCNGG 4 cut(s) 243, 410, 526, 780
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 3 cut(s) 560, 721, 760
BmtI GCTAGC 1 cut(s) 756
BmuI ACTGGG 1 cut(s) 698
BpmI CTGGAG 2 cut(s) 508, 564
Bpu1102I GCTNAGC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 193, 611
BpuMI CCSGG 1 cut(s) 410
Bsa29I ATCGAT 2 cut(s) 230, 404
BsaHI GRCGYC 1 cut(s) 473
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 6 cut(s) 25, 86, 324, 454, 678, 779
BsaWI WCCGGW 2 cut(s) 173, 338
BsaXI ACNNNNNCTCC 6 cut(s) 408, 438, 506, 536, 802, 832
Bsc4I CCNNNNNNNGG 8 cut(s) 92, 156, 173, 248, 448, 468, 469, 722
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 2 cut(s) 704, 820
Bse3DI GCAATG 1 cut(s) 798
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 3 cut(s) 243, 526, 780
BseCI ATCGAT 2 cut(s) 230, 404
BseDI CCNNGG 6 cut(s) 25, 86, 324, 454, 678, 779
BseGI GGATG 3 cut(s) 280, 575, 712
BseLI CCNNNNNNNGG 8 cut(s) 92, 156, 173, 248, 448, 468, 469, 722
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 3 cut(s) 121, 412, 838
BseNI ACTGG 2 cut(s) 704, 820
BseRI GAGGAG 2 cut(s) 738, 765
BseSI GKGCMC 1 cut(s) 256
BseX3I CGGCCG 1 cut(s) 53
BseXI GCAGC 3 cut(s) 790, 823, 826
BseYI CCCAGC 1 cut(s) 563
Bsh1236I CGCG 5 cut(s) 50, 52, 249, 267, 456
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 5 cut(s) 24, 55, 263, 368, 676
BshNI GGYRCC 1 cut(s) 251
BshTI ACCGGT 1 cut(s) 338
BshVI ATCGAT 2 cut(s) 230, 404
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 3 cut(s) 108, 312, 441
BsiSI CCGG 4 cut(s) 80, 174, 339, 410
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 8 cut(s) 92, 156, 173, 248, 448, 468, 469, 722
BsmAI GTCTC 2 cut(s) 800, 827
BsmBI CGTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 5 cut(s) 24, 55, 263, 368, 676
Bso31I GGTCTC 1 cut(s) 800
Bsp1286I GDGCHC 4 cut(s) 108, 256, 312, 441
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 6 cut(s) 227, 231, 238, 401, 405, 528
Bsp1720I GCTNAGC 1 cut(s) 107
Bsp19I CCATGG 1 cut(s) 86
BspANI GGCC 5 cut(s) 24, 55, 263, 368, 676
BspCNI CTCAG 3 cut(s) 120, 411, 837
BspDI ATCGAT 2 cut(s) 230, 404
BspEI TCCGGA 1 cut(s) 173
BspFNI CGCG 5 cut(s) 50, 52, 249, 267, 456
BspLI GGNNCC 9 cut(s) 84, 126, 161, 178, 253, 418, 452, 460, 547
BspMI ACCTGC 1 cut(s) 587
BspOI GCTAGC 1 cut(s) 756
BspPI GGATC 4 cut(s) 226, 233, 400, 536
BspQI GCTCTTC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 2 cut(s) 704, 820
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 6 cut(s) 25, 86, 324, 454, 678, 779
BssMI GATC 6 cut(s) 227, 231, 238, 401, 405, 528
BssNI GRCGYC 1 cut(s) 473
BssT1I CCWWGG 3 cut(s) 25, 86, 678
Bst2UI CCWGG 3 cut(s) 243, 526, 780
Bst4CI ACNGT 1 cut(s) 760
Bst6I CTCTTC 2 cut(s) 317, 656
BstACI GRCGYC 1 cut(s) 473
BstC8I GCNNGC 5 cut(s) 168, 193, 265, 674, 754
BstDEI CTNAG 4 cut(s) 107, 398, 824, 852
BstDSI CCRYGG 2 cut(s) 86, 454
BstENI CCTNNNNNAGG 1 cut(s) 720
BstF5I GGATG 3 cut(s) 280, 575, 712
BstFNI CGCG 5 cut(s) 50, 52, 249, 267, 456
BstHHI GCGC 2 cut(s) 52, 197
BstKTI GATC 6 cut(s) 230, 234, 241, 404, 408, 531
BstMAI GTCTC 2 cut(s) 800, 827
BstMBI GATC 6 cut(s) 227, 231, 238, 401, 405, 528
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 176, 260, 307, 638
BstNI CCWGG 3 cut(s) 243, 526, 780
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 4 cut(s) 241, 408, 524, 778
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 5 cut(s) 50, 52, 249, 267, 456
BstV1I GCAGC 3 cut(s) 790, 823, 826
BstXI CCANNNNNNTGG 2 cut(s) 376, 743
BstZI CGGCCG 1 cut(s) 53
Bsu15I ATCGAT 2 cut(s) 230, 404
BsuRI GGCC 5 cut(s) 24, 55, 263, 368, 676
BsuTUI ATCGAT 2 cut(s) 230, 404
BtgI CCRYGG 2 cut(s) 86, 454
BtsCI GGATG 3 cut(s) 280, 575, 712
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 5 cut(s) 168, 193, 265, 674, 754
CciNI GCGGCCGC 1 cut(s) 53
CfoI GCGC 2 cut(s) 52, 197
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 160, 262, 451, 675
Cfr42I CCGCGG 1 cut(s) 457
ClaI ATCGAT 2 cut(s) 230, 404
CseI GACGC 2 cut(s) 256, 462
Csp6I GTAC 1 cut(s) 292
CspAI ACCGGT 1 cut(s) 338
CspCI CAANNNNNGTGG 2 cut(s) 667, 702
CviAII CATG 3 cut(s) 87, 443, 749
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 4 cut(s) 107, 398, 824, 852
DpnI GATC 6 cut(s) 229, 233, 240, 403, 407, 530
DpnII GATC 6 cut(s) 227, 231, 238, 401, 405, 528
DriI GACNNNNNGTC 1 cut(s) 819
EaeI YGGCCR 1 cut(s) 53
EagI CGGCCG 1 cut(s) 53
Eam1104I CTCTTC 2 cut(s) 317, 656
Eam1105I GACNNNNNGTC 1 cut(s) 819
EarI CTCTTC 2 cut(s) 317, 656
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 2 cut(s) 106, 310
EclXI CGGCCG 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 25, 86, 678
Eco147I AGGCCT 1 cut(s) 24
Eco24I GRGCYC 2 cut(s) 108, 312
Eco31I GGTCTC 1 cut(s) 800
Eco47I GGWCC 2 cut(s) 160, 451
Eco52I CGGCCG 1 cut(s) 53
Eco53kI GAGCTC 2 cut(s) 106, 310
EcoICRI GAGCTC 2 cut(s) 106, 310
EcoNI CCTNNNNNAGG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 3 cut(s) 241, 524, 778
EcoT14I CCWWGG 3 cut(s) 25, 86, 678
EcoT38I GRGCYC 2 cut(s) 108, 312
ErhI CCWWGG 3 cut(s) 25, 86, 678
Esp3I CGTCTC 1 cut(s) 827
FaeI CATG 3 cut(s) 90, 446, 752
FaiI YATR 8 cut(s) 7, 88, 444, 581, 698, 741, 750, 848
FaqI GGGAC 1 cut(s) 464
FatI CATG 3 cut(s) 86, 442, 748
FauI CCCGC 4 cut(s) 114, 175, 272, 350
Fnu4HI GCNGC 6 cut(s) 53, 56, 321, 804, 837, 840
FokI GGATG 3 cut(s) 267, 582, 699
FriOI GRGCYC 2 cut(s) 108, 312
Fsp4HI GCNGC 6 cut(s) 53, 56, 321, 804, 837, 840
FspBI CTAG 5 cut(s) 26, 59, 468, 753, 807
GlaI GCGC 2 cut(s) 51, 196
GluI GCNGC 6 cut(s) 53, 56, 321, 804, 837, 840
GsaI CCCAGC 1 cut(s) 567
GsuI CTGGAG 2 cut(s) 508, 564
HaeIII GGCC 5 cut(s) 24, 55, 263, 368, 676
HapII CCGG 4 cut(s) 80, 174, 339, 410
HgaI GACGC 2 cut(s) 256, 462
HhaI GCGC 2 cut(s) 52, 197
Hin1I GRCGYC 1 cut(s) 473
Hin1II CATG 3 cut(s) 90, 446, 752
Hin6I GCGC 2 cut(s) 50, 195
HinP1I GCGC 2 cut(s) 50, 195
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 330
HpaII CCGG 4 cut(s) 80, 174, 339, 410
HphI GGTGA 3 cut(s) 213, 491, 725
Hpy188I TCNGA 5 cut(s) 103, 383, 401, 656, 827
Hpy188III TCNNGA 2 cut(s) 174, 543
Hpy99I CGWCG 3 cut(s) 320, 425, 437
HpyAV CCTTC 2 cut(s) 358, 781
HpyCH4III ACNGT 1 cut(s) 760
HpyCH4IV ACGT 2 cut(s) 17, 432
HpyCH4V TGCA 1 cut(s) 596
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 260, 307, 638
HpyF3I CTNAG 4 cut(s) 107, 398, 824, 852
HpySE526I ACGT 2 cut(s) 17, 432
Hsp92I GRCGYC 1 cut(s) 473
Hsp92II CATG 3 cut(s) 90, 446, 752
HspAI GCGC 2 cut(s) 50, 195
Kpn2I TCCGGA 1 cut(s) 173
KspI CCGCGG 1 cut(s) 457
Kzo9I GATC 6 cut(s) 227, 231, 238, 401, 405, 528
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 5 cut(s) 82, 176, 416, 545, 778
Lsp1109I GCAGC 3 cut(s) 790, 823, 826
LweI GCATC 3 cut(s) 560, 721, 760
MaeI CTAG 5 cut(s) 26, 59, 468, 753, 807
MaeII ACGT 2 cut(s) 17, 432
MaeIII GTNAC 2 cut(s) 219, 428
MalI GATC 6 cut(s) 229, 233, 240, 403, 407, 530
MboI GATC 6 cut(s) 227, 231, 238, 401, 405, 528
MboII GAAGA 5 cut(s) 304, 373, 565, 618, 673
MhlI GDGCHC 4 cut(s) 108, 256, 312, 441
MluCI AATT 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 361
MroI TCCGGA 1 cut(s) 173
MspA1I CMGCKG 2 cut(s) 456, 567
MspI CCGG 4 cut(s) 80, 174, 339, 410
MspR9I CCNGG 4 cut(s) 243, 410, 526, 780
MvaI CCWGG 3 cut(s) 243, 526, 780
MvnI CGCG 5 cut(s) 50, 52, 249, 267, 456
MwoI GCNNNNNNNGC 4 cut(s) 176, 260, 307, 638
NciI CCSGG 1 cut(s) 410
NcoI CCATGG 1 cut(s) 86
NdeII GATC 6 cut(s) 227, 231, 238, 401, 405, 528
NheI GCTAGC 1 cut(s) 752
NlaIII CATG 3 cut(s) 90, 446, 752
NlaIV GGNNCC 9 cut(s) 84, 126, 161, 178, 253, 418, 452, 460, 547
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 219
NotI GCGGCCGC 1 cut(s) 53
NspI RCATGY 1 cut(s) 752
PaqCI CACCTGC 1 cut(s) 587
PceI AGGCCT 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 4 cut(s) 188, 312, 321, 429
PfeI GAWTC 1 cut(s) 330
PfoI TCCNGGA 2 cut(s) 408, 524
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 6 cut(s) 54, 57, 322, 805, 838, 841
PpuMI RGGWCCY 1 cut(s) 160
Psp124BI GAGCTC 2 cut(s) 108, 312
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 3 cut(s) 241, 524, 778
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 3 cut(s) 241, 524, 778
PspN4I GGNNCC 9 cut(s) 84, 126, 161, 178, 253, 418, 452, 460, 547
PspPI GGNCC 4 cut(s) 160, 262, 451, 675
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SacI GAGCTC 2 cut(s) 108, 312
SacII CCGCGG 1 cut(s) 457
SapI GCTCTTC 1 cut(s) 317
SatI GCNGC 6 cut(s) 53, 56, 321, 804, 837, 840
Sau3AI GATC 6 cut(s) 227, 231, 238, 401, 405, 528
Sau96I GGNCC 4 cut(s) 160, 262, 451, 675
ScrFI CCNGG 4 cut(s) 243, 410, 526, 780
SduI GDGCHC 4 cut(s) 108, 256, 312, 441
SfaNI GCATC 3 cut(s) 560, 721, 760
Sfr303I CCGCGG 1 cut(s) 457
SgrBI CCGCGG 1 cut(s) 457
SinI GGWCC 2 cut(s) 160, 451
SmlI CTYRAG 2 cut(s) 208, 626
SmoI CTYRAG 2 cut(s) 208, 626
Sse9I AATT 1 cut(s) 370
SseBI AGGCCT 1 cut(s) 24
SspMI CTAG 5 cut(s) 26, 59, 468, 753, 807
SstI GAGCTC 2 cut(s) 108, 312
StuI AGGCCT 1 cut(s) 24
StyD4I CCNGG 4 cut(s) 241, 408, 524, 778
StyI CCWWGG 3 cut(s) 25, 86, 678
TaaI ACNGT 1 cut(s) 760
TaiI ACGT 2 cut(s) 20, 435
TaqI TCGA 6 cut(s) 182, 230, 237, 404, 435, 708
TasI AATT 1 cut(s) 370
TauI GCSGC 3 cut(s) 55, 58, 323
TfiI GAWTC 1 cut(s) 330
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 3 cut(s) 803, 836, 839
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 337, 713
TspGWI ACGGA 4 cut(s) 117, 273, 528, 735
VpaK11BI GGWCC 2 cut(s) 160, 451
XagI CCTNNNNNAGG 1 cut(s) 720
XceI RCATGY 1 cut(s) 752
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 5 cut(s) 26, 59, 468, 753, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.