MD05G1264000.v1.1

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
39934522 .. 39936911
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1264000.v1.1.491

Sequence Viewer

Length: 780 bp
ATGGGGAGGGTTATCCGAGCTCAGCGTAAGGGTGCGGGCTCCGTTTTCAAGTCGCACACCCACCACCGCAAGGGTCCTGCCCGCTTCCGGAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGTGTCGTCACCGAGATCATCCACGATCCTGGTCGCGGTGCCCCGTTGGCCCGCGTCAGCTTCCGCCATCCGTTTAGGTACAAGAAGCAGAACGAGCTCTTCGTTGCCGCCGAGGGAATCTACACCGGTCAGTTCATCTACTGCGGGAAGAAGGCCAATTTGGTGGTCGGGAATGTGTTGCCTCTCAGATCGATCCCGGAGGGAGCTGTCGTCTGTAACGTCGAGCACCATGTTGGGGACCGCGGAACCCTCGCTAGGGCGTCTGGTGATTACGCTGTTGTTATCAGCCACAACCCTGACAACGATACCTCCAGGGTCAAGCTTCCGTCTGGAGCCAAGAAGATTGTTCCAAGCGGGTGCCGTGCTATGATTGGGCAAGTTGCAGGTGGAGGAAGAACAGAAAAGCCAATGCTCAAGGCTGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCCAAGGTTCGTGGTGTGGCTATGAACCCAGTCGAGCATCCTCATGGAGGAGGTAATCACCAGCATATTGGACATGCTAGCACGGTCAGGCGTGACGCTCCTCCTGGGCAGAAGGTTGGTCTCATTGCTGCTAGGAGGACTGGTCGTCTCAGAGGACAAGCTGCTGCTAACATATCGAAGGCAGACAAGTGA

Protein Analysis

260

Amino Acids

28.07

Weight (kDa)

10.89

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L2_N PF00181 2 - 90 1.5e-22 Ribosomal Proteins L2, RNA binding N-terminal domain
Ribosomal_L2_C PF03947 98 - 224 3.9e-46 Ribosomal Proteins L2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 500
AccB1I GGYRCC 2 cut(s) 164, 483
AccII CGCG 3 cut(s) 162, 180, 369
AccIII TCCGGA 1 cut(s) 87
AclWI GGATC 2 cut(s) 146, 313
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 7 cut(s) 70, 87, 161, 361, 381, 382, 635
AgeI ACCGGT 1 cut(s) 251
AgsI TTSAA 1 cut(s) 49
AhdI GACNNNNNGTC 1 cut(s) 732
AjnI CCWGG 3 cut(s) 154, 437, 691
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 6 cut(s) 20, 186, 223, 332, 448, 749
AluI AGCT 6 cut(s) 20, 186, 223, 332, 448, 749
Alw21I GWGCWC 3 cut(s) 22, 225, 354
Alw26I GTCTC 2 cut(s) 713, 740
AlwI GGATC 2 cut(s) 146, 313
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 3 cut(s) 174, 279, 587
ApeKI GCWGC 3 cut(s) 716, 749, 752
AsiGI ACCGGT 1 cut(s) 251
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 74, 175, 364, 588
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 3 cut(s) 127, 404, 638
AsuNHI GCTAGC 1 cut(s) 665
AvaII GGWCC 2 cut(s) 74, 364
BaeGI GKGCMC 1 cut(s) 169
BanI GGYRCC 2 cut(s) 164, 483
BanII GRGCYC 3 cut(s) 22, 41, 225
Bbv12I GWGCWC 3 cut(s) 22, 225, 354
BbvI GCAGC 3 cut(s) 703, 736, 739
BccI CCATC 1 cut(s) 201
BceAI ACGGC 2 cut(s) 130, 471
BciT130I CCWGG 3 cut(s) 156, 439, 693
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 713, 740
BfaI CTAG 3 cut(s) 381, 666, 720
BfuAI ACCTGC 1 cut(s) 500
BglI GCCNNNNNGGC 1 cut(s) 173
BisI GCNGC 4 cut(s) 234, 717, 750, 753
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 4 cut(s) 235, 718, 751, 754
Bme1390I CCNGG 4 cut(s) 156, 323, 439, 693
Bme18I GGWCC 2 cut(s) 74, 364
BmeRI GACNNNNNGTC 1 cut(s) 732
BmgT120I GGNCC 4 cut(s) 74, 175, 364, 588
BmiI GGNNCC 8 cut(s) 40, 75, 92, 166, 365, 373, 460, 485
BmrFI CCNGG 4 cut(s) 156, 323, 439, 693
BmrI ACTGGG 1 cut(s) 611
BmsI GCATC 1 cut(s) 634
BmtI GCTAGC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 611
BpmI CTGGAG 2 cut(s) 421, 477
Bpu1102I GCTNAGC 1 cut(s) 21
BpuEI CTTGAG 2 cut(s) 107, 524
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 5 cut(s) 237, 367, 438, 591, 692
BsaWI WCCGGW 2 cut(s) 87, 251
BsaXI ACNNNNNCTCC 6 cut(s) 321, 351, 419, 449, 715, 745
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 87, 161, 361, 381, 382, 635
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 617, 733
Bse3DI GCAATG 1 cut(s) 711
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 3 cut(s) 156, 439, 693
BseCI ATCGAT 1 cut(s) 317
BseDI CCNNGG 5 cut(s) 237, 367, 438, 591, 692
BseGI GGATG 3 cut(s) 144, 193, 625
BseLI CCNNNNNNNGG 7 cut(s) 70, 87, 161, 361, 381, 382, 635
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 3 cut(s) 35, 325, 751
BseNI ACTGG 2 cut(s) 617, 733
BseRI GAGGAG 2 cut(s) 651, 678
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 3 cut(s) 703, 736, 739
Bsh1236I CGCG 3 cut(s) 162, 180, 369
BshFI GGCC 3 cut(s) 176, 281, 589
BshNI GGYRCC 2 cut(s) 164, 483
BshTI ACCGGT 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 317
BsiHKAI GWGCWC 3 cut(s) 22, 225, 354
BsiSI CCGG 3 cut(s) 88, 252, 323
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 7 cut(s) 70, 87, 161, 361, 381, 382, 635
BsmAI GTCTC 2 cut(s) 713, 740
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 3 cut(s) 176, 281, 589
Bso31I GGTCTC 1 cut(s) 713
Bsp1286I GDGCHC 5 cut(s) 22, 41, 169, 225, 354
Bsp13I TCCGGA 1 cut(s) 87
Bsp143I GATC 4 cut(s) 141, 151, 314, 318
Bsp1720I GCTNAGC 1 cut(s) 21
BspANI GGCC 3 cut(s) 176, 281, 589
BspCNI CTCAG 3 cut(s) 34, 324, 750
BspDI ATCGAT 1 cut(s) 317
BspEI TCCGGA 1 cut(s) 87
BspFNI CGCG 3 cut(s) 162, 180, 369
BspLI GGNNCC 8 cut(s) 40, 75, 92, 166, 365, 373, 460, 485
BspMI ACCTGC 1 cut(s) 500
BspOI GCTAGC 1 cut(s) 669
BspPI GGATC 2 cut(s) 146, 313
BspQI GCTCTTC 1 cut(s) 230
BspT107I GGYRCC 2 cut(s) 164, 483
BspTNI GGTCTC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 2 cut(s) 617, 733
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 5 cut(s) 237, 367, 438, 591, 692
BssMI GATC 4 cut(s) 141, 151, 314, 318
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 3 cut(s) 156, 439, 693
Bst4CI ACNGT 1 cut(s) 673
Bst6I CTCTTC 2 cut(s) 230, 569
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 6 cut(s) 37, 82, 107, 178, 587, 667
BstDEI CTNAG 3 cut(s) 21, 311, 737
BstDSI CCRYGG 1 cut(s) 367
BstENI CCTNNNNNAGG 1 cut(s) 633
BstF5I GGATG 3 cut(s) 144, 193, 625
BstFNI CGCG 3 cut(s) 162, 180, 369
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 4 cut(s) 144, 154, 317, 321
BstMAI GTCTC 2 cut(s) 713, 740
BstMBI GATC 4 cut(s) 141, 151, 314, 318
BstMWI GCNNNNNNNGC 4 cut(s) 90, 173, 220, 551
BstNI CCWGG 3 cut(s) 156, 439, 693
BstNSI RCATGY 1 cut(s) 665
BstSCI CCNGG 4 cut(s) 154, 321, 437, 691
BstSLI GKGCMC 1 cut(s) 169
BstUI CGCG 3 cut(s) 162, 180, 369
BstV1I GCAGC 3 cut(s) 703, 736, 739
BstXI CCANNNNNNTGG 3 cut(s) 155, 289, 656
Bsu15I ATCGAT 1 cut(s) 317
BsuRI GGCC 3 cut(s) 176, 281, 589
BsuTUI ATCGAT 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 3 cut(s) 144, 193, 625
BveI ACCTGC 1 cut(s) 500
Cac8I GCNNGC 6 cut(s) 37, 82, 107, 178, 587, 667
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 4 cut(s) 74, 175, 364, 588
Cfr42I CCGCGG 1 cut(s) 370
ClaI ATCGAT 1 cut(s) 317
CseI GACGC 3 cut(s) 169, 375, 692
Csp6I GTAC 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 251
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CviAII CATG 3 cut(s) 356, 632, 662
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 3 cut(s) 21, 311, 737
DpnI GATC 4 cut(s) 143, 153, 316, 320
DpnII GATC 4 cut(s) 141, 151, 314, 318
DriI GACNNNNNGTC 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 230, 569
Eam1105I GACNNNNNGTC 1 cut(s) 732
EarI CTCTTC 2 cut(s) 230, 569
EciI GGCGGA 1 cut(s) 179
Ecl136II GAGCTC 2 cut(s) 20, 223
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 3 cut(s) 22, 41, 225
Eco31I GGTCTC 1 cut(s) 713
Eco47I GGWCC 2 cut(s) 74, 364
Eco53kI GAGCTC 2 cut(s) 20, 223
EcoICRI GAGCTC 2 cut(s) 20, 223
EcoNI CCTNNNNNAGG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 3 cut(s) 154, 437, 691
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 3 cut(s) 22, 41, 225
ErhI CCWWGG 1 cut(s) 591
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 3 cut(s) 359, 635, 665
FaiI YATR 7 cut(s) 357, 494, 611, 633, 654, 663, 761
FaqI GGGAC 1 cut(s) 377
FatI CATG 3 cut(s) 355, 631, 661
FauI CCCGC 5 cut(s) 28, 89, 185, 263, 473
Fnu4HI GCNGC 4 cut(s) 234, 717, 750, 753
FokI GGATG 3 cut(s) 131, 180, 612
FriOI GRGCYC 3 cut(s) 22, 41, 225
Fsp4HI GCNGC 4 cut(s) 234, 717, 750, 753
FspBI CTAG 3 cut(s) 381, 666, 720
GlaI GCGC 1 cut(s) 110
GluI GCNGC 4 cut(s) 234, 717, 750, 753
GsuI CTGGAG 2 cut(s) 421, 477
HaeIII GGCC 3 cut(s) 176, 281, 589
HapII CCGG 3 cut(s) 88, 252, 323
HgaI GACGC 3 cut(s) 169, 375, 692
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 3 cut(s) 359, 635, 665
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 1 cut(s) 243
HpaII CCGG 3 cut(s) 88, 252, 323
HphI GGTGA 3 cut(s) 127, 404, 638
Hpy188I TCNGA 4 cut(s) 17, 314, 569, 740
Hpy188III TCNNGA 3 cut(s) 88, 295, 456
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 3 cut(s) 271, 694, 760
HpyCH4III ACNGT 1 cut(s) 673
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 1 cut(s) 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 90, 173, 220, 551
HpyF3I CTNAG 3 cut(s) 21, 311, 737
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 3 cut(s) 359, 635, 665
HspAI GCGC 1 cut(s) 109
Kpn2I TCCGGA 1 cut(s) 87
KspI CCGCGG 1 cut(s) 370
Kzo9I GATC 4 cut(s) 141, 151, 314, 318
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 5 cut(s) 44, 90, 329, 458, 691
Lsp1109I GCAGC 3 cut(s) 703, 736, 739
LweI GCATC 1 cut(s) 634
MaeI CTAG 3 cut(s) 381, 666, 720
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 3 cut(s) 133, 341, 680
MalI GATC 4 cut(s) 143, 153, 316, 320
MboI GATC 4 cut(s) 141, 151, 314, 318
MboII GAAGA 5 cut(s) 217, 286, 478, 531, 586
MhlI GDGCHC 5 cut(s) 22, 41, 169, 225, 354
MluCI AATT 1 cut(s) 283
MroI TCCGGA 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 3 cut(s) 88, 252, 323
MspR9I CCNGG 4 cut(s) 156, 323, 439, 693
MvaI CCWGG 3 cut(s) 156, 439, 693
MvnI CGCG 3 cut(s) 162, 180, 369
MwoI GCNNNNNNNGC 4 cut(s) 90, 173, 220, 551
NciI CCSGG 1 cut(s) 323
NdeII GATC 4 cut(s) 141, 151, 314, 318
NheI GCTAGC 1 cut(s) 665
NlaIII CATG 3 cut(s) 359, 635, 665
NlaIV GGNNCC 8 cut(s) 40, 75, 92, 166, 365, 373, 460, 485
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 2 cut(s) 133, 680
NspI RCATGY 1 cut(s) 665
PaqCI CACCTGC 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 225, 234, 342
PfeI GAWTC 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 321
PinAI ACCGGT 1 cut(s) 251
PkrI GCNGC 4 cut(s) 235, 718, 751, 754
PpuMI RGGWCCY 1 cut(s) 74
Psp124BI GAGCTC 2 cut(s) 22, 225
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 154, 437, 691
PspGI CCWGG 3 cut(s) 154, 437, 691
PspN4I GGNNCC 8 cut(s) 40, 75, 92, 166, 365, 373, 460, 485
PspPI GGNCC 4 cut(s) 74, 175, 364, 588
PspPPI RGGWCCY 1 cut(s) 74
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 2 cut(s) 22, 225
SacII CCGCGG 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 230
SatI GCNGC 4 cut(s) 234, 717, 750, 753
Sau3AI GATC 4 cut(s) 141, 151, 314, 318
Sau96I GGNCC 4 cut(s) 74, 175, 364, 588
ScrFI CCNGG 4 cut(s) 156, 323, 439, 693
SduI GDGCHC 5 cut(s) 22, 41, 169, 225, 354
SfaNI GCATC 1 cut(s) 634
Sfr303I CCGCGG 1 cut(s) 370
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 2 cut(s) 74, 364
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 122, 539
SmoI CTYRAG 2 cut(s) 122, 539
Sse9I AATT 1 cut(s) 283
SspMI CTAG 3 cut(s) 381, 666, 720
SstI GAGCTC 2 cut(s) 22, 225
StyD4I CCNGG 4 cut(s) 154, 321, 437, 691
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 1 cut(s) 673
TaiI ACGT 1 cut(s) 348
TaqI TCGA 5 cut(s) 96, 317, 348, 621, 764
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 1 cut(s) 243
TseFI GTSAC 2 cut(s) 133, 680
TseI GCWGC 3 cut(s) 716, 749, 752
Tsp45I GTSAC 2 cut(s) 133, 680
TspDTI ATGAA 2 cut(s) 250, 626
TspGWI ACGGA 3 cut(s) 31, 186, 441
VpaK11BI GGWCC 2 cut(s) 74, 364
XagI CCTNNNNNAGG 1 cut(s) 633
XceI RCATGY 1 cut(s) 665
XspI CTAG 3 cut(s) 381, 666, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.