Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003560

Physical Location & Seq

Genomic Coordinates Forward (+)

23210213 .. 23211669

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g20270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTACCTCAAGGGCGTCGTCACCGAGATCGATCCACGACCCCGGTCGCGGTGCCCCGTTGGCCCGCGTCAGCTTCCGCCACCCCTTCCGCTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCCGAGGGCATCTACACCGGCCAGTTCATTTACTGCGGGAAGAAGGCCAACTTGGTGGTCGGAAATGTGTTGCCTCTCAGATCGATCCCGGAGGGAGCCGTCGTCTGCAACGTCGAGCACCATGTCGGCGACCGTGGAACCCTAGCTAGGGCTTCTGGTGATTACGCCGTTGTTATCAGCCACAACCCTGATAACGATACTTCCAGGATCAAACTTCCGTCTGGAGCCAAGAAGATTGTTCCAAGTGGGTGCCGTGCTATGATTGGGCAGGTTGCAGGAGGAGGAAGAACAGAAAAGCCAATGCTCAAGGCTGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCCAAGGTTCGTGGTGTGGCTATGAACCCAGTCGAGCATCCTCACGGAGGAGGTAACCACCAGCATATTGGACATGCTAGCACTGTCAGGCGTGACGCTCCTCCCGGGCAGAAGGTTGGTCTCATTGCCGCTAGGAGGACGGGTCGTCTCAGAGGACAAGCTGCTGCAAACATCTCTAAGGCAGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L2 Ribosomal_L2_C

Protein Analysis

223

Amino Acids

23.83

Weight (kDa)

10.75

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18020 AT3G51190 AT4G36130
fragaria_vesca	FvH4_3g11370 FvH4_3g11370 FvH4_3g19850
malus_domestica	MD05G1264000.v1.1 MD10G1241900.v1.1
prunus_persica	Prupe.1G202200_v2.0.a1 Prupe.4G101600_v2.0.a1
pyrus_communis	pycom05g24810 pycom10g20260 pycom10g20270
rosa_chinensis	RchiOBHm_Chr5g0018321 RchiOBHm_Chr5g0033291
rosa_laevigata	RLG00000032351 RLG00000033468
rosa_multiflora	Rmu_co8428655.1_g000001 Rmu_sc0002206.1_g000007 Rmu_sc0005702.1_g000002 Rmu_sc0009715.1_g000002 Rmu_sc0011919.1_g000007
rosa_roxburghii	Rroxscaffold_1G00046690
rosa_rugosa	Rorug05G0041300 Rorug05G0139200
rosa_samantha	Rh5AG134500 Rh5AG230600 Rh5BG133300 Rh5BG231600 Rh5CG145000 Rh5CG260300 Rh5DG134700 Rh5DG236700
rosa_wichuraiana	Rw5G011760 Rw5G021080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AccB1I	GGYRCC	2 cut(s)	53, 372
AccII	CGCG	2 cut(s)	51, 69
AciI	CCGC	7 cut(s)	51, 67, 79, 91, 123, 159, 606
AclWI	GGATC	3 cut(s)	28, 202, 338
AcoI	YGGCCR	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	17
AfiI	CCNNNNNNNGG	5 cut(s)	50, 270, 271, 524, 612
AhdI	GACNNNNNGTC	1 cut(s)	621
AjnI	CCWGG	1 cut(s)	326
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	75, 112, 269, 638
AluI	AGCT	4 cut(s)	75, 112, 269, 638
Alw21I	GWGCWC	2 cut(s)	114, 243
Alw26I	GTCTC	2 cut(s)	602, 629
AlwI	GGATC	3 cut(s)	28, 202, 338
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	63, 142, 168, 476
ApeKI	GCWGC	2 cut(s)	638, 641
AspS9I	GGNCC	2 cut(s)	64, 477
AsuC2I	CCSGG	4 cut(s)	45, 212, 582, 583
AsuHPI	GGTGA	2 cut(s)	15, 293
AsuNHI	GCTAGC	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	2 cut(s)	53, 372
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	114, 243
BbvI	GCAGC	2 cut(s)	625, 628
BceAI	ACGGC	3 cut(s)	206, 275, 360
BciT130I	CCWGG	1 cut(s)	328
BcnI	CCSGG	4 cut(s)	45, 212, 582, 583
BcoDI	GTCTC	2 cut(s)	602, 629
BfaI	CTAG	4 cut(s)	266, 270, 555, 609
BfuAI	ACCTGC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	4 cut(s)	123, 606, 639, 642
BlsI	GCNGC	4 cut(s)	124, 607, 640, 643
Bme1390I	CCNGG	5 cut(s)	45, 212, 328, 582, 583
BmeRI	GACNNNNNGTC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	2 cut(s)	64, 477
BmiI	GGNNCC	5 cut(s)	55, 220, 262, 349, 374
BmrFI	CCNGG	5 cut(s)	45, 212, 328, 582, 583
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	141, 523
BmtI	GCTAGC	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	500
BoxI	GACNNNNGTC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	4 cut(s)	45, 212, 582, 583
Bsa29I	ATCGAT	2 cut(s)	32, 206
BsaHI	GRCGYC	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	5 cut(s)	43, 126, 256, 480, 581
BsaXI	ACNNNNNCTCC	4 cut(s)	210, 240, 604, 634
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 270, 271, 524, 612
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	145, 506
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	2 cut(s)	32, 206
BseDI	CCNNGG	5 cut(s)	43, 126, 256, 480, 581
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	5 cut(s)	50, 270, 271, 524, 612
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	214, 640
BseNI	ACTGG	2 cut(s)	145, 506
BseRI	GAGGAG	3 cut(s)	417, 540, 567
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	625, 628
Bsh1236I	CGCG	2 cut(s)	51, 69
Bsh1285I	CGRYCG	2 cut(s)	49, 256
BshFI	GGCC	4 cut(s)	65, 144, 170, 478
BshNI	GGYRCC	2 cut(s)	53, 372
BshVI	ATCGAT	2 cut(s)	32, 206
BsiEI	CGRYCG	2 cut(s)	49, 256
BsiHKAI	GWGCWC	2 cut(s)	114, 243
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	4 cut(s)	45, 141, 212, 582
BslI	CCNNNNNNNGG	5 cut(s)	50, 270, 271, 524, 612
BsmAI	GTCTC	2 cut(s)	602, 629
BsmBI	CGTCTC	1 cut(s)	629
BsnI	GGCC	4 cut(s)	65, 144, 170, 478
Bso31I	GGTCTC	1 cut(s)	602
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	3 cut(s)	58, 114, 243
Bsp143I	GATC	5 cut(s)	29, 33, 203, 207, 330
BspACI	CCGC	7 cut(s)	51, 67, 79, 91, 123, 159, 606
BspANI	GGCC	4 cut(s)	65, 144, 170, 478
BspCNI	CTCAG	2 cut(s)	213, 639
BspDI	ATCGAT	2 cut(s)	32, 206
BspFNI	CGCG	2 cut(s)	51, 69
BspLI	GGNNCC	5 cut(s)	55, 220, 262, 349, 374
BspMI	ACCTGC	1 cut(s)	382
BspOI	GCTAGC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	28, 202, 338
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	2 cut(s)	53, 372
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	145, 506
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	5 cut(s)	43, 126, 256, 480, 581
BssMI	GATC	5 cut(s)	29, 33, 203, 207, 330
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	2 cut(s)	257, 562
Bst6I	CTCTTC	2 cut(s)	119, 458
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	3 cut(s)	67, 476, 556
BstDEI	CTNAG	3 cut(s)	200, 626, 654
BstDSI	CCRYGG	1 cut(s)	256
BstEII	GGTNACC	1 cut(s)	530
BstENI	CCTNNNNNAGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	514
BstFNI	CGCG	2 cut(s)	51, 69
BstKTI	GATC	5 cut(s)	32, 36, 206, 210, 333
BstMAI	GTCTC	2 cut(s)	602, 629
BstMBI	GATC	5 cut(s)	29, 33, 203, 207, 330
BstMCI	CGRYCG	2 cut(s)	49, 256
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 109, 440
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	554
BstPAI	GACNNNNGTC	1 cut(s)	45
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	5 cut(s)	43, 210, 326, 580, 581
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	2 cut(s)	51, 69
BstV1I	GCAGC	2 cut(s)	625, 628
BstXI	CCANNNNNNTGG	2 cut(s)	178, 545
Bsu15I	ATCGAT	2 cut(s)	32, 206
BsuRI	GGCC	4 cut(s)	65, 144, 170, 478
BsuTUI	ATCGAT	2 cut(s)	32, 206
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	558
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	3 cut(s)	67, 476, 556
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	64, 477
Cfr9I	CCCGGG	1 cut(s)	581
ClaI	ATCGAT	2 cut(s)	32, 206
CseI	GACGC	3 cut(s)	6, 58, 581
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	2 cut(s)	245, 551
DdeI	CTNAG	3 cut(s)	200, 626, 654
DpnI	GATC	5 cut(s)	31, 35, 205, 209, 332
DpnII	GATC	5 cut(s)	29, 33, 203, 207, 330
DriI	GACNNNNNGTC	1 cut(s)	621
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	119, 458
Eam1105I	GACNNNNNGTC	1 cut(s)	621
EarI	CTCTTC	2 cut(s)	119, 458
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	112
Eco88I	CYCGRG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	530
EcoICRI	GAGCTC	1 cut(s)	112
EcoNI	CCTNNNNNAGG	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	480
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	2 cut(s)	248, 554
FaiI	YATR	5 cut(s)	246, 383, 500, 543, 552
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	2 cut(s)	244, 550
FauI	CCCGC	2 cut(s)	74, 152
Fnu4HI	GCNGC	4 cut(s)	123, 606, 639, 642
FokI	GGATG	1 cut(s)	501
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	123, 606, 639, 642
FspBI	CTAG	4 cut(s)	266, 270, 555, 609
GluI	GCNGC	4 cut(s)	123, 606, 639, 642
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	4 cut(s)	65, 144, 170, 478
HapII	CCGG	4 cut(s)	45, 141, 212, 582
HgaI	GACGC	3 cut(s)	6, 58, 581
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	248, 554
HpaII	CCGG	4 cut(s)	45, 141, 212, 582
HphI	GGTGA	2 cut(s)	15, 293
Hpy188I	TCNGA	4 cut(s)	185, 203, 458, 629
Hpy188III	TCNNGA	1 cut(s)	345
Hpy99I	CGWCG	4 cut(s)	22, 122, 227, 239
HpyAV	CCTTC	3 cut(s)	97, 160, 583
HpyCH4III	ACNGT	2 cut(s)	257, 562
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	231, 398, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 109, 440
HpyF3I	CTNAG	3 cut(s)	200, 626, 654
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	248, 554
Kzo9I	GATC	5 cut(s)	29, 33, 203, 207, 330
LguI	GCTCTTC	1 cut(s)	119
LmnI	GCTCC	3 cut(s)	218, 347, 580
Lsp1109I	GCAGC	2 cut(s)	625, 628
LweI	GCATC	2 cut(s)	141, 523
MaeI	CTAG	4 cut(s)	266, 270, 555, 609
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	21, 530, 569
MalI	GATC	5 cut(s)	31, 35, 205, 209, 332
MboI	GATC	5 cut(s)	29, 33, 203, 207, 330
MboII	GAAGA	5 cut(s)	106, 175, 367, 420, 475
MhlI	GDGCHC	3 cut(s)	58, 114, 243
MmeI	TCCRAC	1 cut(s)	163
MspI	CCGG	4 cut(s)	45, 141, 212, 582
MspR9I	CCNGG	5 cut(s)	45, 212, 328, 582, 583
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	2 cut(s)	51, 69
MwoI	GCNNNNNNNGC	3 cut(s)	62, 109, 440
NciI	CCSGG	4 cut(s)	45, 212, 582, 583
NdeII	GATC	5 cut(s)	29, 33, 203, 207, 330
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	2 cut(s)	248, 554
NlaIV	GGNNCC	5 cut(s)	55, 220, 262, 349, 374
NmeAIII	GCCGAG	1 cut(s)	151
NmuCI	GTSAC	2 cut(s)	21, 569
NspI	RCATGY	1 cut(s)	554
PciSI	GCTCTTC	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 123, 231
PfoI	TCCNGGA	2 cut(s)	210, 326
PkrI	GCNGC	4 cut(s)	124, 607, 640, 643
PshAI	GACNNNNGTC	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	530
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	5 cut(s)	55, 220, 262, 349, 374
PspPI	GGNCC	2 cut(s)	64, 477
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	119
SatI	GCNGC	4 cut(s)	123, 606, 639, 642
Sau3AI	GATC	5 cut(s)	29, 33, 203, 207, 330
Sau96I	GGNCC	2 cut(s)	64, 477
ScrFI	CCNGG	5 cut(s)	45, 212, 328, 582, 583
SduI	GDGCHC	3 cut(s)	58, 114, 243
SfaNI	GCATC	2 cut(s)	141, 523
SmaI	CCCGGG	1 cut(s)	583
SmlI	CTYRAG	2 cut(s)	10, 428
SmoI	CTYRAG	2 cut(s)	10, 428
SsiI	CCGC	7 cut(s)	51, 67, 79, 91, 123, 159, 606
SspMI	CTAG	4 cut(s)	266, 270, 555, 609
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	5 cut(s)	43, 210, 326, 580, 581
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	257, 562
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	4 cut(s)	32, 206, 237, 510
TauI	GCSGC	2 cut(s)	125, 608
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	2 cut(s)	21, 569
TseI	GCWGC	2 cut(s)	638, 641
Tsp45I	GTSAC	2 cut(s)	21, 569
TspDTI	ATGAA	2 cut(s)	139, 515
TspGWI	ACGGA	2 cut(s)	330, 537
TspMI	CCCGGG	1 cut(s)	581
TspRI	CASTG	1 cut(s)	565
XagI	CCTNNNNNAGG	1 cut(s)	522
XceI	RCATGY	1 cut(s)	554
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmaI	CCCGGG	1 cut(s)	581
XspI	CTAG	4 cut(s)	266, 270, 555, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.