pycom10g20260

60S ribosomal protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
23206846 .. 23208527
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g20260.3

Sequence Viewer

Length: 867 bp
ATGACCGTCCATATAGTTTGGGCCTTGGAGGTTTTTGGAAGACCATTTTGCGCGGCCGCTAGTAGCAGACAACACTCACCGGAGCCATGGGAAGGGTCATTAGAGCTCAGCGTAAGGGTGCTGGTTCCGTCTTCAAGTCGCACACCCACCACCGCAAGGGTCCCGCCCGATTCCGGAGCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGAGATCGATCCACGACCCGGGTCGCGGTGCCCCGTTGGCCCGCGTCAGCTTCCGCCATCCGTTCAGGTACAAGAAGCAGAACGAGCTCTTCGTCGCCGCCGAGGGCATATACACTGGACAGTTCATATACTGCGGGAAGAAGGCCAATTTGGTTGTTGGAAACGTGTTGCCTCTCAGATCGATCCCCGAGGGAGCCGTCGTCTGCAACGTCGAGCACCATGTCGGCGACCGTGGAACCCTAGCTAGGGCTTCTGGTGATTACGCCGTTGTTATCAGCCACAACCCTGATAACGATACTTCCAGGATCAAATTGCCCTCTGGTGCCAAGAAGATTGTTCCCAGCGGGTGCCGTGCTATGATTGGGCAGGTAGCAGGGGGAGGAAGAACTGAAAAGCCAATGCTCAAGGCTGGTAATGCTTACCACAAGTTCAGAGTGAAGAGGAACTGCTGGCCTAAGGTTCGCGGTGTGGCTATGAATCCAGTTGAGCATCCTCATGGAGGAGGTAATCACCAGCATATTGGACATGCTAGCACGGTCAGGCGCGATGCTCCTCCTGGGCAGAAGGTTGGTCTCATTGCTGCTAGGAGAACTGGTCGTCTCAGAGGACAAGCTGCTGCAAACATCTCTAAGGCAGACAAGTGA

Protein Analysis

289

Amino Acids

30.74

Weight (kDa)

10.61

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 580
AccB1I GGYRCC 3 cut(s) 251, 545, 570
AccII CGCG 5 cut(s) 53, 249, 267, 687, 768
AccIII TCCGGA 1 cut(s) 173
AclWI GGATC 3 cut(s) 226, 400, 536
AcoI YGGCCR 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 8 cut(s) 92, 156, 173, 241, 248, 468, 469, 722
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 1 cut(s) 135
AjnI CCWGG 2 cut(s) 524, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 5 cut(s) 106, 273, 310, 467, 836
AluI AGCT 5 cut(s) 106, 273, 310, 467, 836
Alw21I GWGCWC 3 cut(s) 108, 312, 441
Alw26I GTCTC 2 cut(s) 800, 827
AlwI GGATC 3 cut(s) 226, 400, 536
Ama87I CYCGRG 2 cut(s) 241, 410
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 5 cut(s) 21, 54, 261, 366, 674
ApeKI GCWGC 3 cut(s) 803, 836, 839
AspLEI GCGC 3 cut(s) 53, 197, 768
AspS9I GGNCC 3 cut(s) 21, 160, 262
AsuC2I CCSGG 2 cut(s) 242, 243
AsuHPI GGTGA 4 cut(s) 69, 213, 491, 725
AsuNHI GCTAGC 1 cut(s) 752
AvaI CYCGRG 2 cut(s) 241, 410
AvaII GGWCC 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 678
BaeGI GKGCMC 1 cut(s) 256
BanI GGYRCC 3 cut(s) 251, 545, 570
BanII GRGCYC 2 cut(s) 108, 312
BbsI GAAGAC 2 cut(s) 46, 123
Bbv12I GWGCWC 3 cut(s) 108, 312, 441
BbvI GCAGC 3 cut(s) 790, 823, 826
BccI CCATC 1 cut(s) 288
BceAI ACGGC 4 cut(s) 216, 404, 473, 558
BciT130I CCWGG 2 cut(s) 526, 780
BcnI CCSGG 2 cut(s) 242, 243
BcoDI GTCTC 2 cut(s) 800, 827
BfaI CTAG 5 cut(s) 60, 464, 468, 753, 807
BfuAI ACCTGC 1 cut(s) 580
BglI GCCNNNNNGGC 1 cut(s) 260
BisI GCNGC 6 cut(s) 54, 57, 321, 804, 837, 840
BlpI GCTNAGC 1 cut(s) 107
BlsI GCNGC 6 cut(s) 55, 58, 322, 805, 838, 841
Bme1390I CCNGG 4 cut(s) 242, 243, 526, 780
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 2 cut(s) 241, 410
BmgT120I GGNCC 3 cut(s) 21, 160, 262
BmrFI CCNGG 4 cut(s) 242, 243, 526, 780
BmsI GCATC 2 cut(s) 721, 760
BmtI GCTAGC 1 cut(s) 756
BoxI GACNNNNGTC 1 cut(s) 243
BpiI GAAGAC 2 cut(s) 46, 123
Bpu1102I GCTNAGC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 193, 611
BpuMI CCSGG 2 cut(s) 242, 243
Bsa29I ATCGAT 2 cut(s) 230, 404
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 7 cut(s) 24, 86, 241, 324, 411, 454, 779
BsaWI WCCGGW 2 cut(s) 79, 173
BsaXI ACNNNNNCTCC 4 cut(s) 408, 438, 802, 832
Bsc4I CCNNNNNNNGG 8 cut(s) 92, 156, 173, 241, 248, 468, 469, 722
Bse1I ACTGG 3 cut(s) 343, 704, 820
Bse21I CCTNAGG 1 cut(s) 678
Bse3DI GCAATG 1 cut(s) 798
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 2 cut(s) 526, 780
BseCI ATCGAT 2 cut(s) 230, 404
BseDI CCNNGG 7 cut(s) 24, 86, 241, 324, 411, 454, 779
BseGI GGATG 2 cut(s) 280, 712
BseLI CCNNNNNNNGG 8 cut(s) 92, 156, 173, 241, 248, 468, 469, 722
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 3 cut(s) 121, 412, 838
BseNI ACTGG 3 cut(s) 343, 704, 820
BseRI GAGGAG 2 cut(s) 738, 765
BseSI GKGCMC 1 cut(s) 256
BseX3I CGGCCG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 790, 823, 826
BseYI CCCAGC 1 cut(s) 563
Bsh1236I CGCG 5 cut(s) 53, 249, 267, 687, 768
Bsh1285I CGRYCG 2 cut(s) 57, 454
BshFI GGCC 5 cut(s) 23, 56, 263, 368, 676
BshNI GGYRCC 3 cut(s) 251, 545, 570
BshVI ATCGAT 2 cut(s) 230, 404
BsiEI CGRYCG 2 cut(s) 57, 454
BsiHKAI GWGCWC 3 cut(s) 108, 312, 441
BsiHKCI CYCGRG 2 cut(s) 241, 410
BsiSI CCGG 3 cut(s) 80, 174, 242
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 8 cut(s) 92, 156, 173, 241, 248, 468, 469, 722
BsmAI GTCTC 2 cut(s) 800, 827
BsmBI CGTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 5 cut(s) 23, 56, 263, 368, 676
Bso31I GGTCTC 1 cut(s) 800
BsoBI CYCGRG 2 cut(s) 241, 410
Bsp1286I GDGCHC 4 cut(s) 108, 256, 312, 441
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 5 cut(s) 227, 231, 401, 405, 528
Bsp1720I GCTNAGC 1 cut(s) 107
Bsp19I CCATGG 1 cut(s) 86
BspANI GGCC 5 cut(s) 23, 56, 263, 368, 676
BspCNI CTCAG 3 cut(s) 120, 411, 837
BspDI ATCGAT 2 cut(s) 230, 404
BspEI TCCGGA 1 cut(s) 173
BspFNI CGCG 5 cut(s) 53, 249, 267, 687, 768
BspMI ACCTGC 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 756
BspPI GGATC 3 cut(s) 226, 400, 536
BspQI GCTCTTC 1 cut(s) 317
BspT107I GGYRCC 3 cut(s) 251, 545, 570
BspTNI GGTCTC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 798
BsrI ACTGG 3 cut(s) 343, 704, 820
BssECI CCNNGG 7 cut(s) 24, 86, 241, 324, 411, 454, 779
BssMI GATC 5 cut(s) 227, 231, 401, 405, 528
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 2 cut(s) 24, 86
Bst2UI CCWGG 2 cut(s) 526, 780
Bst4CI ACNGT 4 cut(s) 7, 345, 455, 760
Bst6I CTCTTC 2 cut(s) 317, 656
BstACI GRCGYC 1 cut(s) 215
BstC8I GCNNGC 4 cut(s) 193, 265, 674, 754
BstDEI CTNAG 5 cut(s) 107, 398, 678, 824, 852
BstDSI CCRYGG 2 cut(s) 86, 454
BstENI CCTNNNNNAGG 1 cut(s) 720
BstF5I GGATG 2 cut(s) 280, 712
BstFNI CGCG 5 cut(s) 53, 249, 267, 687, 768
BstHHI GCGC 3 cut(s) 53, 197, 768
BstKTI GATC 5 cut(s) 230, 234, 404, 408, 531
BstMAI GTCTC 2 cut(s) 800, 827
BstMBI GATC 5 cut(s) 227, 231, 401, 405, 528
BstMCI CGRYCG 2 cut(s) 57, 454
BstMWI GCNNNNNNNGC 3 cut(s) 260, 307, 638
BstNI CCWGG 2 cut(s) 526, 780
BstNSI RCATGY 1 cut(s) 752
BstPAI GACNNNNGTC 1 cut(s) 243
BstSCI CCNGG 4 cut(s) 240, 241, 524, 778
BstSLI GKGCMC 1 cut(s) 256
BstUI CGCG 5 cut(s) 53, 249, 267, 687, 768
BstV1I GCAGC 3 cut(s) 790, 823, 826
BstV2I GAAGAC 2 cut(s) 46, 123
BstXI CCANNNNNNTGG 1 cut(s) 743
BstZI CGGCCG 1 cut(s) 54
Bsu15I ATCGAT 2 cut(s) 230, 404
Bsu36I CCTNAGG 1 cut(s) 678
BsuRI GGCC 5 cut(s) 23, 56, 263, 368, 676
BsuTUI ATCGAT 2 cut(s) 230, 404
BtgI CCRYGG 2 cut(s) 86, 454
BtgZI GCGATG 1 cut(s) 783
BtsCI GGATG 2 cut(s) 280, 712
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 580
Cac8I GCNNGC 4 cut(s) 193, 265, 674, 754
CciNI GCGGCCGC 1 cut(s) 54
CfoI GCGC 3 cut(s) 53, 197, 768
Cfr13I GGNCC 3 cut(s) 21, 160, 262
Cfr9I CCCGGG 1 cut(s) 241
ClaI ATCGAT 2 cut(s) 230, 404
CseI GACGC 2 cut(s) 204, 256
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 87, 443, 719, 749
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 5 cut(s) 107, 398, 678, 824, 852
DpnI GATC 5 cut(s) 229, 233, 403, 407, 530
DpnII GATC 5 cut(s) 227, 231, 401, 405, 528
EaeI YGGCCR 1 cut(s) 54
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 317, 656
EarI CTCTTC 2 cut(s) 317, 656
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 2 cut(s) 106, 310
EclXI CGGCCG 1 cut(s) 54
Eco130I CCWWGG 2 cut(s) 24, 86
Eco24I GRGCYC 2 cut(s) 108, 312
Eco31I GGTCTC 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 54
Eco53kI GAGCTC 2 cut(s) 106, 310
Eco81I CCTNAGG 1 cut(s) 678
Eco88I CYCGRG 2 cut(s) 241, 410
EcoICRI GAGCTC 2 cut(s) 106, 310
EcoNI CCTNNNNNAGG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 524, 778
EcoT14I CCWWGG 2 cut(s) 24, 86
EcoT38I GRGCYC 2 cut(s) 108, 312
ErhI CCWWGG 2 cut(s) 24, 86
Esp3I CGTCTC 1 cut(s) 827
FaeI CATG 4 cut(s) 90, 446, 722, 752
FaqI GGGAC 1 cut(s) 146
FatI CATG 4 cut(s) 86, 442, 718, 748
FauI CCCGC 4 cut(s) 171, 272, 350, 560
Fnu4HI GCNGC 6 cut(s) 54, 57, 321, 804, 837, 840
FokI GGATG 2 cut(s) 267, 699
FriOI GRGCYC 2 cut(s) 108, 312
Fsp4HI GCNGC 6 cut(s) 54, 57, 321, 804, 837, 840
FspBI CTAG 5 cut(s) 60, 464, 468, 753, 807
GlaI GCGC 3 cut(s) 52, 196, 767
GluI GCNGC 6 cut(s) 54, 57, 321, 804, 837, 840
GsaI CCCAGC 1 cut(s) 567
HaeIII GGCC 5 cut(s) 23, 56, 263, 368, 676
HapII CCGG 3 cut(s) 80, 174, 242
HgaI GACGC 2 cut(s) 204, 256
HhaI GCGC 3 cut(s) 53, 197, 768
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 4 cut(s) 90, 446, 722, 752
Hin6I GCGC 3 cut(s) 51, 195, 766
HinP1I GCGC 3 cut(s) 51, 195, 766
HinfI GANTC 2 cut(s) 170, 700
HpaII CCGG 3 cut(s) 80, 174, 242
HphI GGTGA 4 cut(s) 69, 213, 491, 725
Hpy188I TCNGA 3 cut(s) 401, 656, 827
Hpy188III TCNNGA 1 cut(s) 174
Hpy99I CGWCG 4 cut(s) 220, 320, 425, 437
HpyAV CCTTC 3 cut(s) 86, 358, 781
HpyCH4III ACNGT 4 cut(s) 7, 345, 455, 760
HpyCH4IV ACGT 2 cut(s) 387, 432
HpyCH4V TGCA 2 cut(s) 429, 842
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 307, 638
HpyF3I CTNAG 5 cut(s) 107, 398, 678, 824, 852
HpySE526I ACGT 2 cut(s) 387, 432
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 4 cut(s) 90, 446, 722, 752
HspAI GCGC 3 cut(s) 51, 195, 766
KflI GGGWCCC 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 173
Kzo9I GATC 5 cut(s) 227, 231, 401, 405, 528
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 4 cut(s) 82, 176, 416, 778
Lsp1109I GCAGC 3 cut(s) 790, 823, 826
LweI GCATC 2 cut(s) 721, 760
MaeI CTAG 5 cut(s) 60, 464, 468, 753, 807
MaeII ACGT 2 cut(s) 387, 432
MaeIII GTNAC 1 cut(s) 219
MalI GATC 5 cut(s) 229, 233, 403, 407, 530
MboI GATC 5 cut(s) 227, 231, 401, 405, 528
MboII GAAGA 7 cut(s) 51, 123, 304, 373, 565, 618, 673
MhlI GDGCHC 4 cut(s) 108, 256, 312, 441
MluCI AATT 2 cut(s) 370, 533
MmeI TCCRAC 1 cut(s) 361
MroI TCCGGA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 717
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 3 cut(s) 80, 174, 242
MspR9I CCNGG 4 cut(s) 242, 243, 526, 780
MvaI CCWGG 2 cut(s) 526, 780
MvnI CGCG 5 cut(s) 53, 249, 267, 687, 768
MwoI GCNNNNNNNGC 3 cut(s) 260, 307, 638
NciI CCSGG 2 cut(s) 242, 243
NcoI CCATGG 1 cut(s) 86
NdeII GATC 5 cut(s) 227, 231, 401, 405, 528
NheI GCTAGC 1 cut(s) 752
NlaIII CATG 4 cut(s) 90, 446, 722, 752
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 219
NotI GCGGCCGC 1 cut(s) 54
NspI RCATGY 1 cut(s) 752
PciSI GCTCTTC 1 cut(s) 317
PcsI WCGNNNNNNNCGW 4 cut(s) 188, 312, 321, 429
PfeI GAWTC 2 cut(s) 170, 700
PfoI TCCNGGA 1 cut(s) 524
PkrI GCNGC 6 cut(s) 55, 58, 322, 805, 838, 841
PpuMI RGGWCCY 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 243
Psp124BI GAGCTC 2 cut(s) 108, 312
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 524, 778
PspFI CCCAGC 1 cut(s) 563
PspGI CCWGG 2 cut(s) 524, 778
PspPI GGNCC 3 cut(s) 21, 160, 262
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 717
SacI GAGCTC 2 cut(s) 108, 312
SapI GCTCTTC 1 cut(s) 317
SatI GCNGC 6 cut(s) 54, 57, 321, 804, 837, 840
Sau3AI GATC 5 cut(s) 227, 231, 401, 405, 528
Sau96I GGNCC 3 cut(s) 21, 160, 262
ScrFI CCNGG 4 cut(s) 242, 243, 526, 780
SduI GDGCHC 4 cut(s) 108, 256, 312, 441
SfaNI GCATC 2 cut(s) 721, 760
SinI GGWCC 1 cut(s) 160
SmaI CCCGGG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 717
SmlI CTYRAG 2 cut(s) 208, 626
SmoI CTYRAG 2 cut(s) 208, 626
Sse9I AATT 2 cut(s) 370, 533
SspMI CTAG 5 cut(s) 60, 464, 468, 753, 807
SstI GAGCTC 2 cut(s) 108, 312
StyD4I CCNGG 4 cut(s) 240, 241, 524, 778
StyI CCWWGG 2 cut(s) 24, 86
TaaI ACNGT 4 cut(s) 7, 345, 455, 760
TaiI ACGT 2 cut(s) 390, 435
TaqI TCGA 4 cut(s) 182, 230, 404, 435
TasI AATT 2 cut(s) 370, 533
TauI GCSGC 3 cut(s) 56, 59, 323
TfiI GAWTC 2 cut(s) 170, 700
TscAI CASTG 1 cut(s) 343
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 3 cut(s) 803, 836, 839
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 337, 713
TspGWI ACGGA 2 cut(s) 117, 273
TspMI CCCGGG 1 cut(s) 241
TspRI CASTG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 160
XagI CCTNNNNNAGG 1 cut(s) 720
XceI RCATGY 1 cut(s) 752
XmaI CCCGGG 1 cut(s) 241
XspI CTAG 5 cut(s) 60, 464, 468, 753, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.