Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003860

Physical Location & Seq

Genomic Coordinates Forward (+)

8514899 .. 8516138

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCTAAAGTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCGTCTGCAACACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCATCAGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010494 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0035770 GO:0036464 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S30

Protein Analysis

62

Amino Acids

6.89

Weight (kDa)

12.0

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30	PF04758	3 - 59	3.8e-29	Ribosomal protein S30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19750 AT4G29390 AT5G56670
fragaria_vesca	FvH4_1g10750
malus_domestica	MD02G1121400.v1.1 MD07G1019900.v1.1 MD08G1149300.v1.1 MD08G1231800.v1.1 MD09G1198000.v1.1 MD15G1235200.v1.1 MD15G1425200.v1.1 MD17G1178900.v1.1
prunus_persica	Prupe.3G053900_v2.0.a1 Prupe.7G177900_v2.0.a1
pyrus_communis	pycom02g09450 pycom08g20160 pycom09g11470 pycom15g20940 pycom15g37690 pycom17g18790
rosa_chinensis	RchiOBHm_Chr2g0097921 RchiOBHm_Chr2g0142001
rosa_multiflora	Rmu_sc0004757.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144450
rosa_rugosa	Rorug02G0069200 Rorug02G0369600
rosa_samantha	Rh2AG116100 Rh2BG118900 Rh2BG432400 Rh2CG120500 Rh2DG120200 Rh2DG442200
rosa_wichuraiana	Rw2G009080 Rw2G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	124, 138
Alw21I	GWGCWC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	10, 167
AsuHPI	GGTGA	2 cut(s)	52, 127
AvaII	GGWCC	2 cut(s)	10, 167
BauI	CACGAG	2 cut(s)	27, 90
Bbv12I	GWGCWC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	111, 125
BlpI	GCTNAGC	1 cut(s)	66
Bme18I	GGWCC	2 cut(s)	10, 167
BmgT120I	GGNCC	2 cut(s)	10, 167
Bpu1102I	GCTNAGC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	2 cut(s)	124, 138
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	13
BssSI	CACGAG	2 cut(s)	27, 90
Bst2BI	CACGAG	2 cut(s)	27, 90
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	13
BtgI	CCRYGG	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	10, 167
CseI	GACGC	1 cut(s)	98
CviJI	RGCY	3 cut(s)	26, 65, 88
CviKI_1	RGCY	3 cut(s)	26, 65, 88
DdeI	CTNAG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco47I	GGWCC	2 cut(s)	10, 167
FaiI	YATR	1 cut(s)	105
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	52, 127
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	51, 181
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	66
LpnPI	CCDG	2 cut(s)	46, 56
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	91, 94, 172
MhlI	GDGCHC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	38, 99, 158
MspI	CCGG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PspPI	GGNCC	2 cut(s)	10, 167
Sau96I	GGNCC	2 cut(s)	10, 167
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	4 cut(s)	12, 42, 49, 58
SinI	GGWCC	2 cut(s)	10, 167
SsiI	CCGC	2 cut(s)	124, 138
TaaI	ACNGT	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	9
VpaK11BI	GGWCC	2 cut(s)	10, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.