Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003860

Physical Location & Seq

Genomic Coordinates Reverse (-)

17997480 .. 17998351

Gene Structure 872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1198000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGTAAGGTTCACGGATCGCTCGCACGTGCCGGGAAGGTTAGGGGTCAGACTCCGAAGGTGGCGAAGCAAGACAAGAAGAAGAAGCCCAGAGGCCGCGCCCACAAGAGGCTGCAGTACAACAGGAGATTCGTCACAGCCGTTGTTGGATTCGGGAAGAAGAGGGGGCCGAACTCTTCCGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S30

Protein Analysis

63

Amino Acids

6.91

Weight (kDa)

12.0

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30	PF04758	3 - 59	1.1e-30	Ribosomal protein S30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19750 AT4G29390 AT5G56670
fragaria_vesca	FvH4_1g10750
malus_domestica	MD02G1121400.v1.1 MD07G1019900.v1.1 MD08G1149300.v1.1 MD08G1231800.v1.1 MD09G1198000.v1.1 MD15G1235200.v1.1 MD15G1425200.v1.1 MD17G1178900.v1.1
prunus_persica	Prupe.3G053900_v2.0.a1 Prupe.7G177900_v2.0.a1
pyrus_communis	pycom02g09450 pycom08g20160 pycom09g11470 pycom15g20940 pycom15g37690 pycom17g18790
rosa_chinensis	RchiOBHm_Chr2g0097921 RchiOBHm_Chr2g0142001
rosa_multiflora	Rmu_sc0004757.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144450
rosa_rugosa	Rorug02G0069200 Rorug02G0369600
rosa_samantha	Rh2AG116100 Rh2BG118900 Rh2BG432400 Rh2CG120500 Rh2DG120200 Rh2DG442200
rosa_wichuraiana	Rw2G009080 Rw2G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	99
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	25
AcvI	CACGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	108
AlwI	GGATC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	94, 167
ApeKI	GCWGC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	34
BbrPI	CACGTG	1 cut(s)	29
BbvI	GCAGC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	34
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	97, 113
BlsI	GCNGC	2 cut(s)	98, 114
Bme1390I	CCNGG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	96, 169
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	2 cut(s)	96, 169
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	96, 169
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	25
BssMI	GATC	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	155, 181
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	113
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	2 cut(s)	96, 169
Cac8I	GCNNGC	1 cut(s)	24
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	5 cut(s)	88, 96, 112, 140, 169
CviKI_1	RGCY	5 cut(s)	88, 96, 112, 140, 169
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	155, 181
EarI	CTCTTC	2 cut(s)	155, 181
Eco72I	CACGTG	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	97, 113
Fsp4HI	GCNGC	2 cut(s)	97, 113
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	2 cut(s)	97, 113
HaeIII	GGCC	2 cut(s)	96, 169
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	3 cut(s)	52, 129, 150
HpaII	CCGG	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	3 cut(s)	51, 57, 181
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	31, 52
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	28
HspAI	GCGC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	3 cut(s)	46, 103, 109
Lsp1109I	GCAGC	1 cut(s)	99
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	5 cut(s)	91, 94, 168, 169, 172
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	3 cut(s)	86, 102, 156
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	99
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	129, 150
PkrI	GCNGC	2 cut(s)	98, 114
PleI	GAGTC	1 cut(s)	46
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	29
PspCI	CACGTG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SatI	GCNGC	2 cut(s)	97, 113
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	4 cut(s)	12, 31, 42, 63
SfcI	CTRYAG	1 cut(s)	113
SsiI	CCGC	1 cut(s)	97
StyD4I	CCNGG	1 cut(s)	32
TaiI	ACGT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	129, 150
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.