Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003860

Physical Location & Seq

Genomic Coordinates Reverse (-)

22935211 .. 22936084

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G56670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGAAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAGGTTAGAGGACAAACTCCAAAGGTTGCGAAGCAAGATAAGAAAAAGAAGCCCAGAGGTCGTGCTCACAAGCGTCTGCAGCACAACCGTCGTTTTGTCACCGCAGTTGTTGGTTTCGGAAAGAAGAGAGGACCCAACTCTTCTGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010494 GO:0015935 GO:0019538 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0035770 GO:0036464 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S30

Protein Analysis

62

Amino Acids

6.89

Weight (kDa)

12.0

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30	PF04758	3 - 59	3.8e-29	Ribosomal protein S30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19750 AT4G29390 AT5G56670
fragaria_vesca	FvH4_1g10750
malus_domestica	MD02G1121400.v1.1 MD07G1019900.v1.1 MD08G1149300.v1.1 MD08G1231800.v1.1 MD09G1198000.v1.1 MD15G1235200.v1.1 MD15G1425200.v1.1 MD17G1178900.v1.1
prunus_persica	Prupe.3G053900_v2.0.a1 Prupe.7G177900_v2.0.a1
pyrus_communis	pycom02g09450 pycom08g20160 pycom09g11470 pycom15g20940 pycom15g37690 pycom17g18790
rosa_chinensis	RchiOBHm_Chr2g0097921 RchiOBHm_Chr2g0142001
rosa_multiflora	Rmu_sc0004757.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144450
rosa_rugosa	Rorug02G0069200 Rorug02G0369600
rosa_samantha	Rh2AG116100 Rh2BG118900 Rh2BG432400 Rh2CG120500 Rh2DG120200 Rh2DG442200
rosa_wichuraiana	Rw2G009080 Rw2G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BfmI	CTRYAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	169
Bse118I	RCCGGY	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssMI	GATC	1 cut(s)	17
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	155, 181
BstDEI	CTNAG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	98
CviJI	RGCY	2 cut(s)	26, 88
CviKI_1	RGCY	2 cut(s)	26, 88
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	155, 181
EarI	CTCTTC	2 cut(s)	155, 181
Eco47I	GGWCC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	155, 181
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	17
LpnPI	CCDG	2 cut(s)	46, 103
Lsp1109I	GCAGC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	168, 172
MflI	RGATCY	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	38, 86, 158
MspI	CCGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	115
NdeII	GATC	1 cut(s)	17
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	117
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	1 cut(s)	17
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	4 cut(s)	12, 42, 63, 97
SfcI	CTRYAG	1 cut(s)	113
SgeI	CNNG	8 cut(s)	26, 39, 41, 45, 83, 102, 110, 118
SinI	GGWCC	1 cut(s)	167
SsiI	CCGC	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.