Rh2DG120200

Ribosomal protein S30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003860
Physical Location & Seq
Reverse (-)
9987331 .. 9988602
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG120200.1

Sequence Viewer

Length: 162 bp
ATGGGAAAGGTTCATGGTTCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACCCCAAAGGTGGCCAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGCGCCCACAAGCGCATGCAATACAATCGCCGTTTCGTCACCGCTGGTACTACCATCTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_S30

Protein Analysis

53

Amino Acids

5.99

Weight (kDa)

12.0

Isoelectric Point (pI)

17.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S30 PF04758 3 - 47 7.9e-27 Ribosomal protein S30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 61
AoxI GGCC 2 cut(s) 46, 63
AspLEI GCGC 2 cut(s) 101, 111
AsuHPI GGTGA 2 cut(s) 52, 127
BalI TGGCCA 1 cut(s) 65
BauI CACGAG 1 cut(s) 27
BccI CCATC 1 cut(s) 158
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 48, 65
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 2 cut(s) 48, 65
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 48, 65
BspFNI CGCG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 91
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 113
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 2 cut(s) 101, 111
BstNSI RCATGY 1 cut(s) 115
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 48, 65
BtgI CCRYGG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 2 cut(s) 101, 111
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 144
CviAII CATG 2 cut(s) 14, 112
CviJI RGCY 4 cut(s) 26, 48, 65, 88
CviKI_1 RGCY 4 cut(s) 26, 48, 65, 88
CviQI GTAC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 63
FaeI CATG 2 cut(s) 17, 115
FaiI YATR 2 cut(s) 15, 113
FatI CATG 2 cut(s) 13, 111
GlaI GCGC 2 cut(s) 100, 110
HaeIII GGCC 2 cut(s) 48, 65
HgaI GACGC 1 cut(s) 105
HhaI GCGC 2 cut(s) 101, 111
Hin1II CATG 2 cut(s) 17, 115
Hin6I GCGC 2 cut(s) 99, 109
HinP1I GCGC 2 cut(s) 99, 109
HphI GGTGA 2 cut(s) 52, 127
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 115
Hsp92II CATG 2 cut(s) 17, 115
HspAI GCGC 2 cut(s) 99, 109
LpnPI CCDG 3 cut(s) 18, 56, 126
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 2 cut(s) 91, 94
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 140
MvnI CGCG 1 cut(s) 99
NlaIII CATG 2 cut(s) 17, 115
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 115
PaeI GCATGC 1 cut(s) 115
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SetI ASST 3 cut(s) 12, 42, 63
SphI GCATGC 1 cut(s) 115
SsiI CCGC 1 cut(s) 138
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.