Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003860

Physical Location & Seq

Genomic Coordinates Forward (+)

52621152 .. 52622705

Gene Structure 1554 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1425200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGTAAGGTTCACGGGTCGCTCGCGCGTGCCGGGAAGGTCAGGGGTCAGACCCCGAAGGTCGCCAAGCAAGACAAGAAGAAGAAGCCCAGAGGTCGCGCTCACAAGCGCTTGCAGTACAACCGGAGATTCGTCACCGCCGTTGTTGGATTCGGGAAGAAGAGGGGGCCTAATTCTTCTGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S30

Protein Analysis

63

Amino Acids

6.91

Weight (kDa)

12.0

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30	PF04758	3 - 59	1.1e-30	Ribosomal protein S30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19750 AT4G29390 AT5G56670
fragaria_vesca	FvH4_1g10750
malus_domestica	MD02G1121400.v1.1 MD07G1019900.v1.1 MD08G1149300.v1.1 MD08G1231800.v1.1 MD09G1198000.v1.1 MD15G1235200.v1.1 MD15G1425200.v1.1 MD17G1178900.v1.1
prunus_persica	Prupe.3G053900_v2.0.a1 Prupe.7G177900_v2.0.a1
pyrus_communis	pycom02g09450 pycom08g20160 pycom09g11470 pycom15g20940 pycom15g37690 pycom17g18790
rosa_chinensis	RchiOBHm_Chr2g0097921 RchiOBHm_Chr2g0142001
rosa_multiflora	Rmu_sc0004757.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144450
rosa_rugosa	Rorug02G0069200 Rorug02G0369600
rosa_samantha	Rh2AG116100 Rh2BG118900 Rh2BG432400 Rh2CG120500 Rh2DG120200 Rh2DG442200
rosa_wichuraiana	Rw2G009080 Rw2G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	26, 28, 99
AciI	CCGC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	119
AfeI	AGCGCT	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	110
AoxI	GGCC	1 cut(s)	167
AspLEI	GCGC	3 cut(s)	28, 101, 111
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	34
BfoI	RGCGCY	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	34
BsaWI	WCCGGW	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	171
Bsh1236I	CGCG	3 cut(s)	26, 28, 99
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	33, 124
BsnI	GGCC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	3 cut(s)	26, 28, 99
BspLI	GGNNCC	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	24, 30, 113
BstDEI	CTNAG	1 cut(s)	180
BstFNI	CGCG	3 cut(s)	26, 28, 99
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	3 cut(s)	28, 101, 111
BstSCI	CCNGG	1 cut(s)	32
BstUI	CGCG	3 cut(s)	26, 28, 99
BsuRI	GGCC	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	24, 30, 113
CfoI	GCGC	3 cut(s)	28, 101, 111
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	118
CviJI	RGCY	2 cut(s)	88, 169
CviKI_1	RGCY	2 cut(s)	88, 169
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco47III	AGCGCT	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	167
GlaI	GCGC	3 cut(s)	27, 100, 110
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	33, 124
HhaI	GCGC	3 cut(s)	28, 101, 111
Hin6I	GCGC	3 cut(s)	26, 99, 109
HinP1I	GCGC	3 cut(s)	26, 99, 109
HinfI	GANTC	2 cut(s)	129, 150
HpaII	CCGG	2 cut(s)	33, 124
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	51, 181
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	31, 52
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	180
HspAI	GCGC	3 cut(s)	26, 99, 109
LpnPI	CCDG	4 cut(s)	28, 46, 103, 137
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	5 cut(s)	91, 94, 168, 169, 172
MluCI	AATT	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	2 cut(s)	86, 156
MspI	CCGG	2 cut(s)	33, 124
MspR9I	CCNGG	1 cut(s)	34
MvnI	CGCG	3 cut(s)	26, 28, 99
NciI	CCSGG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	129, 150
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	4 cut(s)	12, 42, 63, 97
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	32
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	129, 150
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.