Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003860

Physical Location & Seq

Genomic Coordinates Reverse (-)

19326276 .. 19327387

Gene Structure 1112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1235200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGGAAAGGTGCACGGTTCTTTGGCTCGTGCCGGTAAGGTGAGAGGCCAAACACCCAAAGTGGCCAAGCAGGACAAGAAGAAGAAGCCCCGCGGCCGCGCCCACAAGCGCTTGCAATACAACCGCCGATTCGTGACCGCCGTGGTTGGCTTCGGAAAGAAGAGGGGACCAAACTCGTCGGAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0015935 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S30

Protein Analysis

63

Amino Acids

6.91

Weight (kDa)

12.0

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S30	PF04758	3 - 59	1.1e-30	Ribosomal protein S30

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19750 AT4G29390 AT5G56670
fragaria_vesca	FvH4_1g10750
malus_domestica	MD02G1121400.v1.1 MD07G1019900.v1.1 MD08G1149300.v1.1 MD08G1231800.v1.1 MD09G1198000.v1.1 MD15G1235200.v1.1 MD15G1425200.v1.1 MD17G1178900.v1.1
prunus_persica	Prupe.3G053900_v2.0.a1 Prupe.7G177900_v2.0.a1
pyrus_communis	pycom02g09450 pycom08g20160 pycom09g11470 pycom15g20940 pycom15g37690 pycom17g18790
rosa_chinensis	RchiOBHm_Chr2g0097921 RchiOBHm_Chr2g0142001
rosa_multiflora	Rmu_sc0004757.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144450
rosa_rugosa	Rorug02G0069200 Rorug02G0369600
rosa_samantha	Rh2AG116100 Rh2BG118900 Rh2BG432400 Rh2CG120500 Rh2DG120200 Rh2DG442200
rosa_wichuraiana	Rw2G009080 Rw2G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	93, 99
AciI	CCGC	5 cut(s)	91, 93, 97, 124, 138
AcoI	YGGCCR	2 cut(s)	63, 94
AfeI	AGCGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	15
Alw44I	GTGCAC	1 cut(s)	11
Aor51HI	AGCGCT	1 cut(s)	110
AoxI	GGCC	3 cut(s)	46, 63, 94
ApaLI	GTGCAC	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	101, 111
AspS9I	GGNCC	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	15
BalI	TGGCCA	1 cut(s)	65
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	112
BisI	GCNGC	2 cut(s)	94, 97
BlsI	GCNGC	2 cut(s)	95, 98
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	91, 141
Bse118I	RCCGGY	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	91, 141
BseSI	GKGCMC	1 cut(s)	15
BseX3I	CGGCCG	1 cut(s)	94
Bsh1236I	CGCG	2 cut(s)	93, 99
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	48, 65, 96
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	48, 65, 96
Bsp1286I	GDGCHC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	91, 93, 97, 124, 138
BspANI	GGCC	3 cut(s)	48, 65, 96
BspFNI	CGCG	2 cut(s)	93, 99
BspLI	GGNNCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	32
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	91, 141
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	113
BstDSI	CCRYGG	2 cut(s)	91, 141
BstFNI	CGCG	2 cut(s)	93, 99
BstH2I	RGCGCY	1 cut(s)	112
BstHHI	GCGC	2 cut(s)	101, 111
BstMCI	CGRYCG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	15
BstUI	CGCG	2 cut(s)	93, 99
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	3 cut(s)	48, 65, 96
BtgI	CCRYGG	2 cut(s)	91, 141
Cac8I	GCNNGC	1 cut(s)	113
CciNI	GCGGCCGC	1 cut(s)	94
CfoI	GCGC	2 cut(s)	101, 111
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	167
Cfr42I	CCGCGG	1 cut(s)	94
CviJI	RGCY	6 cut(s)	26, 48, 65, 88, 96, 150
CviKI_1	RGCY	6 cut(s)	26, 48, 65, 88, 96, 150
EaeI	YGGCCR	2 cut(s)	63, 94
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EclXI	CGGCCG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	167
Eco47III	AGCGCT	1 cut(s)	110
Eco52I	CGGCCG	1 cut(s)	94
FaqI	GGGAC	1 cut(s)	180
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	2 cut(s)	94, 97
Fsp4HI	GCNGC	2 cut(s)	94, 97
GlaI	GCGC	2 cut(s)	100, 110
GluI	GCNGC	2 cut(s)	94, 97
HaeII	RGCGCY	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	48, 65, 96
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	2 cut(s)	101, 111
Hin6I	GCGC	2 cut(s)	99, 109
HinP1I	GCGC	2 cut(s)	99, 109
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	155, 181
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	13, 115
HspAI	GCGC	2 cut(s)	99, 109
KspI	CCGCGG	1 cut(s)	94
LpnPI	CCDG	2 cut(s)	46, 56
MaeIII	GTNAC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	91, 94, 172
MhlI	GDGCHC	1 cut(s)	15
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	2 cut(s)	38, 156
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	1 cut(s)	33
MvnI	CGCG	2 cut(s)	93, 99
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	133
NotI	GCGGCCGC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	95, 98
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	167
SacII	CCGCGG	1 cut(s)	94
SatI	GCNGC	2 cut(s)	94, 97
Sau96I	GGNCC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	2 cut(s)	12, 42
Sfr303I	CCGCGG	1 cut(s)	94
SgrBI	CCGCGG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	167
SsiI	CCGC	5 cut(s)	91, 93, 97, 124, 138
TaaI	ACNGT	1 cut(s)	17
TauI	GCSGC	2 cut(s)	96, 99
TfiI	GAWTC	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.