Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004757.1

Orthogroup ID

OG0003860

Physical Location & Seq

Genomic Coordinates Reverse (-)

43431 .. 44529

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004757.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgggtaaggttcacggttcgttggctcgtgccggaaaggtgagaggccagaccccaaaggtggccaagcaggacaagaagaagaagcccagaggccgcgcccacaagaggatgcagtacaacaggagattcgtcaccgccgttgttggattcgggaagaagaggggccctaactcgtctgagaaatgttggatacaggatggcatctcctcctgcttcttgtgtcctaagtataggcaaagattgttgctgtgtatgggtacagcttgtattctgcggagtgatcttggtggtaccagagttaaagtcatcctcaaggatgaaccaaaagccttgcctttggagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S30

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

10.64

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003860)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19750 AT4G29390 AT5G56670
fragaria_vesca	FvH4_1g10750
malus_domestica	MD02G1121400.v1.1 MD07G1019900.v1.1 MD08G1149300.v1.1 MD08G1231800.v1.1 MD09G1198000.v1.1 MD15G1235200.v1.1 MD15G1425200.v1.1 MD17G1178900.v1.1
prunus_persica	Prupe.3G053900_v2.0.a1 Prupe.7G177900_v2.0.a1
pyrus_communis	pycom02g09450 pycom08g20160 pycom09g11470 pycom15g20940 pycom15g37690 pycom17g18790
rosa_chinensis	RchiOBHm_Chr2g0097921 RchiOBHm_Chr2g0142001
rosa_multiflora	Rmu_sc0004757.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144450
rosa_rugosa	Rorug02G0069200 Rorug02G0369600
rosa_samantha	Rh2AG116100 Rh2BG118900 Rh2BG432400 Rh2CG120500 Rh2DG120200 Rh2DG442200
rosa_wichuraiana	Rw2G009080 Rw2G034600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	293
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	97, 138, 277
AcoI	YGGCCR	1 cut(s)	63
AfaI	GTAC	3 cut(s)	119, 262, 295
AfiI	CCNNNNNNNGG	2 cut(s)	61, 108
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AoxI	GGCC	4 cut(s)	46, 63, 94, 166
ApaI	GGGCCC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	166, 167
AsuHPI	GGTGA	2 cut(s)	52, 127
BaeGI	GKGCMC	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	285, 318
BalI	TGGCCA	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	293
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	27
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	166, 167
BmiI	GGNNCC	3 cut(s)	167, 168, 295
BmsI	GCATC	2 cut(s)	102, 213
BpuEI	CTTGAG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 108
BseGI	GGATG	4 cut(s)	117, 205, 309, 325
BseLI	CCNNNNNNNGG	2 cut(s)	61, 108
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	48, 65, 96, 168
BshNI	GGYRCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	61, 108
BsnI	GGCC	4 cut(s)	48, 65, 96, 168
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	3 cut(s)	97, 138, 277
BspANI	GGCC	4 cut(s)	48, 65, 96, 168
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	167, 168, 295
BspT107I	GGYRCC	1 cut(s)	293
BssMI	GATC	1 cut(s)	283
BssSI	CACGAG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	180, 228
BstF5I	GGATG	4 cut(s)	117, 205, 309, 325
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	101
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstSLI	GKGCMC	1 cut(s)	170
BstUI	CGCG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	4 cut(s)	48, 65, 96, 168
BtsCI	GGATG	4 cut(s)	117, 205, 309, 325
CfoI	GCGC	1 cut(s)	101
Cfr13I	GGNCC	2 cut(s)	166, 167
Csp6I	GTAC	3 cut(s)	118, 261, 294
CviJI	RGCY	8 cut(s)	26, 48, 65, 88, 96, 168, 266, 332
CviKI_1	RGCY	8 cut(s)	26, 48, 65, 88, 96, 168, 266, 332
CviQI	GTAC	3 cut(s)	118, 261, 294
DdeI	CTNAG	2 cut(s)	180, 228
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	170
EcoO109I	RGGNCCY	2 cut(s)	166, 167
EcoT38I	GRGCYC	1 cut(s)	170
FaiI	YATR	2 cut(s)	234, 257
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	4 cut(s)	124, 212, 296, 332
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	97
GlaI	GCGC	1 cut(s)	100
GluI	GCNGC	1 cut(s)	97
HaeIII	GGCC	4 cut(s)	48, 65, 96, 168
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	99
HinP1I	GCGC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	129, 150
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	52, 127
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	180, 228
HspAI	GCGC	1 cut(s)	99
KpnI	GGTACC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	8 cut(s)	46, 56, 62, 103, 109, 182, 226, 310
LweI	GCATC	2 cut(s)	102, 213
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	91, 94, 169, 172
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	2 cut(s)	127, 170
MnlI	CCTC	6 cut(s)	38, 86, 102, 156, 220, 323
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	99
NdeII	GATC	1 cut(s)	283
NlaIV	GGNNCC	3 cut(s)	167, 168, 295
NmuCI	GTSAC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	129, 150
PkrI	GCNGC	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	167, 168, 295
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	2 cut(s)	166, 167
RsaI	GTAC	3 cut(s)	119, 262, 295
RsaNI	GTAC	3 cut(s)	118, 261, 294
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	2 cut(s)	166, 167
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	4 cut(s)	12, 42, 63, 268
SfaNI	GCATC	2 cut(s)	102, 213
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SsiI	CCGC	3 cut(s)	97, 138, 277
TaaI	ACNGT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	129, 150
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.