Rh2BG118900

40S ribosomal protein S30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003860
Physical Location & Seq
Reverse (-)
10096915 .. 10097407
493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG118900.1

Sequence Viewer

Length: 189 bp
ATGGGAAAGGTTCATGGTTCTTTGGCTCGTGCTGGTAAGGTGAGAGGCCAAACCCCAAAGGTGGCCAAGCAGGACAAGAAGAAGAAGCCCCGTGGACGCGCCCACAAGCGCATGCAATACAATCGCCGTTTCGTCACCGCTGTGGTTGGCTTTGGCAAGAAGAGAGGACCCAACTCATCTGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S30

Protein Analysis

62

Amino Acids

6.93

Weight (kDa)

12.0

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S30 PF04758 3 - 59 8.9e-31 Ribosomal protein S30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 140
AoxI GGCC 2 cut(s) 46, 63
AspLEI GCGC 2 cut(s) 101, 111
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 2 cut(s) 52, 127
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 65
BauI CACGAG 1 cut(s) 27
BceAI ACGGC 1 cut(s) 111
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 91
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 48, 65
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 2 cut(s) 48, 65
BspACI CCGC 1 cut(s) 138
BspANI GGCC 2 cut(s) 48, 65
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 91
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 180
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 2 cut(s) 101, 111
BstNSI RCATGY 1 cut(s) 115
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 2 cut(s) 48, 65
BtgI CCRYGG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 2 cut(s) 101, 111
Cfr13I GGNCC 1 cut(s) 167
CseI GACGC 1 cut(s) 105
CviAII CATG 2 cut(s) 14, 112
CviJI RGCY 5 cut(s) 26, 48, 65, 88, 150
CviKI_1 RGCY 5 cut(s) 26, 48, 65, 88, 150
DdeI CTNAG 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 167
FaeI CATG 2 cut(s) 17, 115
FaiI YATR 2 cut(s) 15, 113
FatI CATG 2 cut(s) 13, 111
GlaI GCGC 2 cut(s) 100, 110
HaeIII GGCC 2 cut(s) 48, 65
HgaI GACGC 1 cut(s) 105
HhaI GCGC 2 cut(s) 101, 111
Hin1II CATG 2 cut(s) 17, 115
Hin6I GCGC 2 cut(s) 99, 109
HinP1I GCGC 2 cut(s) 99, 109
HphI GGTGA 2 cut(s) 52, 127
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 2 cut(s) 17, 115
HspAI GCGC 2 cut(s) 99, 109
LpnPI CCDG 2 cut(s) 18, 56
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 3 cut(s) 91, 94, 172
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 2 cut(s) 38, 158
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 140
Msp20I TGGCCA 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 140
MvnI CGCG 1 cut(s) 99
NlaIII CATG 2 cut(s) 17, 115
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 140
PaeI GCATGC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 140
Sau96I GGNCC 1 cut(s) 167
SetI ASST 3 cut(s) 12, 42, 63
SinI GGWCC 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 140
SphI GCATGC 1 cut(s) 115
SsiI CCGC 1 cut(s) 138
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 167
XceI RCATGY 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.