Rorug02G0069200

Lysine histidine transporter-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003860
Physical Location & Seq
Forward (+)
5392171 .. 5394509
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0069200.1

Sequence Viewer

Length: 234 bp
ATGGAAGAGGAAGGAAAGGAACAAGATATTGCACACATAATCTGGTTCAGGCATGGAAGTGGCATTCAACAAGCAGGTATGTACAAACTTAAAACGGATGGGGCTATTGATCCTAGAAGTGGAAGAAGAGGTTTTGGAGCGGCTATCCGCAATAACAAGGGGGAGCTCAGGGGAGCCTCTGCTCAACAAGCAAATGGTTATTTCCCCCCAGGCCCCAGCTACAGAACTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

77

Amino Acids

8.49

Weight (kDa)

9.59

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 140
AciI CCGC 2 cut(s) 140, 148
AclWI GGATC 1 cut(s) 104
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 208
AluBI AGCT 2 cut(s) 166, 219
AluI AGCT 2 cut(s) 166, 219
Alw21I GWGCWC 1 cut(s) 168
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 210
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 65
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 210
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 175, 214
BmrFI CCNGG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 208
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 215
BshFI GGCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 119
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 1 cut(s) 213
Bsp1286I GDGCHC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 2 cut(s) 140, 148
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 175, 214
BspMI ACCTGC 1 cut(s) 65
BspPI GGATC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 210
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 220
BsuRI GGCC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 82
CviAII CATG 1 cut(s) 53
CviJI RGCY 6 cut(s) 104, 143, 166, 176, 213, 219
CviKI_1 RGCY 6 cut(s) 104, 143, 166, 176, 213, 219
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Ecl136II GAGCTC 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 166
EcoICRI GAGCTC 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 168
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 38, 54, 80
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 114
GluI GCNGC 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 213
Hin1II CATG 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 5
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 56
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 3 cut(s) 137, 163, 173
LpnPI CCDG 7 cut(s) 28, 34, 60, 154, 195, 222, 229
MaeI CTAG 1 cut(s) 114
MalI GATC 1 cut(s) 111
MbiI CCGCTC 1 cut(s) 140
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 17, 135, 138
MhlI GDGCHC 1 cut(s) 168
MnlI CCTC 2 cut(s) 122, 187
MseI TTAA 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 188
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 2 cut(s) 175, 214
PctI GAATGC 1 cut(s) 63
PkrI GCNGC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 175, 214
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 210
SduI GDGCHC 1 cut(s) 168
SetI ASST 4 cut(s) 79, 133, 168, 221
SfcI CTRYAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 57
SsiI CCGC 2 cut(s) 140, 148
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 208
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 143
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 110
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.