Prupe.3G053900_v2.0.a1

40S ribosomal protein S30

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
3792611 .. 3793619
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G053900.1

Sequence Viewer

Length: 189 bp
ATGGGAAAGGTTCACGGATCGCTCGCACGTGCCGGGAAGGTTAGGGGCCAGACCCCAAAGGTTGCCAAGCAAGACAAGAAGAAGAAGCCCAGAGGCCGCGCCCACAAGCGTATGCAGTACAACAGGAGATTCGTCACGGCCGTTGTTGGATTCGGAAAGAAGAGGGGGCCTAACTCTTCCGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

6.93

Weight (kDa)

12.0

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 138
AcvI CACGTG 1 cut(s) 29
AfaI GTAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 25
AoxI GGCC 4 cut(s) 46, 94, 138, 167
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 46, 167
AsuC2I CCSGG 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 29
BceAI ACGGC 2 cut(s) 125, 153
BcnI CCSGG 1 cut(s) 34
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 46, 167
BmiI GGNNCC 2 cut(s) 47, 168
BmrFI CCNGG 1 cut(s) 34
BpuMI CCSGG 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 29
BseX3I CGGCCG 1 cut(s) 138
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 48, 96, 140, 169
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 33
BsnI GGCC 4 cut(s) 48, 96, 140, 169
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 97
BspANI GGCC 4 cut(s) 48, 96, 140, 169
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 47, 168
BspPI GGATC 1 cut(s) 25
BssMI GATC 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 155, 181
BstBAI YACGTR 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 24
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstMCI CGRYCG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 32
BstUI CGCG 1 cut(s) 99
BstZI CGGCCG 1 cut(s) 138
BsuRI GGCC 4 cut(s) 48, 96, 140, 169
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 46, 167
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 5 cut(s) 48, 88, 96, 140, 169
CviKI_1 RGCY 5 cut(s) 48, 88, 96, 140, 169
CviQI GTAC 1 cut(s) 118
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 138
EagI CGGCCG 1 cut(s) 138
Eam1104I CTCTTC 2 cut(s) 155, 181
EarI CTCTTC 2 cut(s) 155, 181
EclXI CGGCCG 1 cut(s) 138
Eco52I CGGCCG 1 cut(s) 138
Eco72I CACGTG 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 167
FaiI YATR 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 97
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 4 cut(s) 48, 96, 140, 169
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 129, 150
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 2 cut(s) 155, 181
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 28
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 46, 62, 103, 109
MaeII ACGT 1 cut(s) 28
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MboII GAAGA 4 cut(s) 91, 94, 168, 172
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 2 cut(s) 86, 156
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 99
NciI CCSGG 1 cut(s) 34
NdeII GATC 1 cut(s) 17
NlaIV GGNNCC 2 cut(s) 47, 168
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 129, 150
PkrI GCNGC 1 cut(s) 98
PmaCI CACGTG 1 cut(s) 29
PmlI CACGTG 1 cut(s) 29
Ppu21I YACGTR 1 cut(s) 29
PspCI CACGTG 1 cut(s) 29
PspN4I GGNNCC 2 cut(s) 47, 168
PspPI GGNCC 2 cut(s) 46, 167
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 2 cut(s) 46, 167
ScrFI CCNGG 1 cut(s) 34
SetI ASST 4 cut(s) 12, 31, 42, 63
SsiI CCGC 1 cut(s) 97
StyD4I CCNGG 1 cut(s) 32
TaiI ACGT 1 cut(s) 31
TatI WGTACW 1 cut(s) 117
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 129, 150
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
TspGWI ACGGA 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.