Rh2DG442200

40S ribosomal protein S30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003860
Physical Location & Seq
Forward (+)
64249400 .. 64250087
688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG442200.1

Sequence Viewer

Length: 189 bp
ATGGGTAAGGTTCACGGTTCGTTGGCTCGTGCCGGAAAGGTGAGAGGCCAGACCCCAAAGGTGGCCAAGCAGGACAAGAAGAAGAAGCCCAGAGGCCGCGCCCACAAGAGGATGCAGTACAACAGGAGATTCGTCACCGCCGTTGTTGGATTCGGGAAGAAGAGGGGCCCCAACTCGTCTGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S30

Protein Analysis

62

Amino Acids

6.93

Weight (kDa)

12.0

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S30 PF04758 3 - 59 8.9e-31 Ribosomal protein S30
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 2 cut(s) 97, 138
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 61, 108
AoxI GGCC 4 cut(s) 46, 63, 94, 166
ApaI GGGCCC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 166, 167
AsuHPI GGTGA 2 cut(s) 52, 127
BaeGI GKGCMC 1 cut(s) 170
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 27
BceAI ACGGC 1 cut(s) 125
BisI GCNGC 1 cut(s) 97
BlsI GCNGC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 166, 167
BmiI GGNNCC 3 cut(s) 167, 168, 169
BmsI GCATC 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 108
BseGI GGATG 1 cut(s) 117
BseLI CCNNNNNNNGG 2 cut(s) 61, 108
BseMII CTCAG 1 cut(s) 171
BseSI GKGCMC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 4 cut(s) 48, 65, 96, 168
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 61, 108
BsnI GGCC 4 cut(s) 48, 65, 96, 168
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 170
BspACI CCGC 2 cut(s) 97, 138
BspANI GGCC 4 cut(s) 48, 65, 96, 168
BspCNI CTCAG 1 cut(s) 172
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 3 cut(s) 167, 168, 169
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 48, 65, 96, 168
BtsCI GGATG 1 cut(s) 117
CfoI GCGC 1 cut(s) 101
Cfr13I GGNCC 2 cut(s) 166, 167
Csp6I GTAC 1 cut(s) 118
CviJI RGCY 6 cut(s) 26, 48, 65, 88, 96, 168
CviKI_1 RGCY 6 cut(s) 26, 48, 65, 88, 96, 168
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco24I GRGCYC 1 cut(s) 170
EcoO109I RGGNCCY 2 cut(s) 166, 167
EcoT38I GRGCYC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 97
FokI GGATG 1 cut(s) 124
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 97
GlaI GCGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 97
HaeIII GGCC 4 cut(s) 48, 65, 96, 168
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 101
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 129, 150
HpaII CCGG 1 cut(s) 33
HphI GGTGA 2 cut(s) 52, 127
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 1 cut(s) 115
HpyF3I CTNAG 1 cut(s) 180
HspAI GCGC 1 cut(s) 99
LpnPI CCDG 5 cut(s) 46, 56, 62, 103, 109
LweI GCATC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 4 cut(s) 91, 94, 169, 172
MhlI GDGCHC 1 cut(s) 170
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 4 cut(s) 38, 86, 102, 156
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 33
MvnI CGCG 1 cut(s) 99
NlaIV GGNNCC 3 cut(s) 167, 168, 169
NmuCI GTSAC 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 2 cut(s) 129, 150
PkrI GCNGC 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 167, 168, 169
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 166, 167
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 1 cut(s) 97
Sau96I GGNCC 2 cut(s) 166, 167
SduI GDGCHC 1 cut(s) 170
SetI ASST 3 cut(s) 12, 42, 63
SfaNI GCATC 1 cut(s) 102
SsiI CCGC 2 cut(s) 97, 138
TaaI ACNGT 1 cut(s) 17
TatI WGTACW 1 cut(s) 117
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 129, 150
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.