Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Forward (+)

8647721 .. 8649225

Gene Structure 1505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAATTCACCACAAGAAATCTCCATTCTCTTCTTCTTCATCATCTTCTTAGACTATGTATCTGCTCAATCTCCTCCTCCTCCTAATCTATACGCAACAAGCGACCTTTTCAAGCCAAGCTTAGCTATCATCACCGGAGTTTTCTCCATCGTCTTCACTCTCACCTTTGTTCTCCTCGTCTACGCGAAATGCTTCCACAATGACCTCCGATCAGAGACCGACAGTGATGGAGAAAGAATACGACATGATCGTCTCTGGCAAGGACTTTTCAATCGGTCTTCAAGATTCTCTGGTCTTGACAAGAAAGCAATCGAATCTCTTCCCTTTTTCAGATTCTCTGCTTTGAAAGGATTGAAACAAGGGCTTGAATGTTCTGTTTGTTTGTCTAAATTCGAAGATGTTGAGATTCTTAGGCTTTTGCCTAAATGCAGACACGCTTTTCATATTGGTTGTATTGACCAGTGGCTTGAGCAGCACGCTACGTGTCCTTTGTGTAGAAACAGAGTCAATATTGAAGACGACCTCTCTGTGTTGGGTAATAGCAGCACTAGTCTTAGGATCTTGAACCAATCTGAGACAAGAGAAGAAGACTCGAGGTTGGAGATTTACATTGAACGCGAAGAAGGAACTAATGACGGGTCATCAAGATTCAGCAGTTTCCGAAAGATTCTAAAGAAATCGTTGTTGCTTGAGCGAGAAGGAAATGAGAACATCGATGAGAAGAAACTTATGCACAAGTTCAATCACAGGATCGTTGTTTCGGATGCTGTGTTTAAGAACCGCTGGAGTAATATCACTTCATCTGATTTGACGTTTTTGACATCAGAAATGCTGAATTCGGTGTCAAGCGACAGATTTTCGTCGGTGGATCGAGTGCATAGAGGTAACTTGCGGGACAAGGAAGATATGGAAATGAAAAGAATGTTGATTAAGCACAAAGACTCATCCAGAAGAACGGTTTCTGAGATCACGACTGTTTCAAGAGAAAAGGCGGTTGGAGGAAGCTACAGAGGTTCAACCGCGTCCACTTCGCAGAATTATGCCGTTACTGCGACCACGGAAGAAAGAAGACGGCGGTTATGGCTGCCGATCGCTAGAAGAACGGCTCAGTGGTTTGTTAACAGAGAGAAAAGTAATGACCTAAACACGACACGCCAAAATCTTAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

390

Amino Acids

45.01

Weight (kDa)

9.1

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	123 - 166	2.4e-13	Ring finger domain
zf-RING_11	PF17123	123 - 152	3.1e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	123 - 165	9.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	124 - 165	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	126 - 166	2.8e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	131 - 171	4.5e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	249
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	3 cut(s)	185, 618, 1022
AciI	CCGC	5 cut(s)	781, 892, 992, 1020, 1075
AclWI	GGATC	3 cut(s)	566, 758, 876
AcsI	RAATTY	3 cut(s)	4, 389, 835
AflIII	ACRYGT	1 cut(s)	482
AhlI	ACTAGT	1 cut(s)	548
AjuI	GAANNNNNNNTTGG	2 cut(s)	978, 1010
AluBI	AGCT	3 cut(s)	120, 125, 1005
AluI	AGCT	3 cut(s)	120, 125, 1005
Alw26I	GTCTC	3 cut(s)	209, 257, 569
AlwI	GGATC	3 cut(s)	566, 758, 876
Ama87I	CYCGRG	1 cut(s)	592
ApeKI	GCWGC	3 cut(s)	472, 543, 1084
ApoI	RAATTY	3 cut(s)	4, 389, 835
Asp700I	GAANNNNTTC	3 cut(s)	191, 318, 958
AsuHPI	GGTGA	2 cut(s)	124, 154
AsuII	TTCGAA	1 cut(s)	393
AvaI	CYCGRG	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	781, 813
BbsI	GAAGAC	5 cut(s)	145, 270, 522, 594, 1075
BbvI	GCAGC	3 cut(s)	484, 555, 1071
BccI	CCATC	2 cut(s)	155, 221
BceAI	ACGGC	3 cut(s)	1028, 1088, 1119
BcoDI	GTCTC	3 cut(s)	209, 257, 569
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	2 cut(s)	549, 1095
BfmI	CTRYAG	1 cut(s)	1006
BisI	GCNGC	3 cut(s)	473, 544, 1085
BlpI	GCTNAGC	1 cut(s)	121
BlsI	GCNGC	3 cut(s)	474, 545, 1086
BmeT110I	CYCGRG	1 cut(s)	592
BmsI	GCATC	1 cut(s)	754
BpiI	GAAGAC	5 cut(s)	145, 270, 522, 594, 1075
BpmI	CTGGAG	1 cut(s)	805
Bpu1102I	GCTNAGC	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	488, 710
Bsa29I	ATCGAT	1 cut(s)	714
BsaAI	YACGTR	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	1056
BsaWI	WCCGGW	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	1056
BseGI	GGATG	2 cut(s)	769, 944
BseMII	CTCAG	3 cut(s)	564, 954, 1121
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	4 cut(s)	63, 66, 69, 164
BseXI	GCAGC	3 cut(s)	484, 555, 1071
Bsh1236I	CGCG	3 cut(s)	185, 618, 1022
Bsh1285I	CGRYCG	1 cut(s)	1092
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	1 cut(s)	1092
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	908
BsmAI	GTCTC	3 cut(s)	209, 257, 569
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	908
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	592
Bsp119I	TTCGAA	1 cut(s)	393
Bsp143I	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
Bsp1720I	GCTNAGC	1 cut(s)	121
BspACI	CCGC	5 cut(s)	781, 892, 992, 1020, 1075
BspCNI	CTCAG	3 cut(s)	565, 955, 1120
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	3 cut(s)	185, 618, 1022
BspPI	GGATC	3 cut(s)	566, 758, 876
BspT104I	TTCGAA	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	1056
BssMI	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
Bst4CI	ACNGT	3 cut(s)	224, 958, 976
Bst6I	CTCTTC	2 cut(s)	35, 324
BstBAI	YACGTR	1 cut(s)	483
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	7 cut(s)	49, 121, 410, 554, 573, 963, 1107
BstDSI	CCRYGG	1 cut(s)	1056
BstF5I	GGATG	2 cut(s)	769, 944
BstFNI	CGCG	3 cut(s)	185, 618, 1022
BstKTI	GATC	7 cut(s)	212, 250, 561, 753, 871, 969, 1092
BstMAI	GTCTC	3 cut(s)	209, 257, 569
BstMBI	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
BstMCI	CGRYCG	1 cut(s)	1092
BstMWI	GCNNNNNNNGC	3 cut(s)	472, 1049, 1081
BstSFI	CTRYAG	1 cut(s)	1006
BstUI	CGCG	3 cut(s)	185, 618, 1022
BstV1I	GCAGC	3 cut(s)	484, 555, 1071
BstV2I	GAAGAC	5 cut(s)	145, 270, 522, 594, 1075
BstX2I	RGATCY	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	558
Bsu15I	ATCGAT	1 cut(s)	714
BsuTUI	ATCGAT	1 cut(s)	714
BtgI	CCRYGG	1 cut(s)	1056
BtsCI	GGATG	2 cut(s)	769, 944
BtsIMutI	CAGTG	3 cut(s)	229, 467, 1115
Cac8I	GCNNGC	1 cut(s)	477
ClaI	ATCGAT	1 cut(s)	714
CseI	GACGC	1 cut(s)	1011
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	9 cut(s)	115, 120, 125, 364, 415, 466, 1005, 1084, 1106
CviKI_1	RGCY	9 cut(s)	115, 120, 125, 364, 415, 466, 1005, 1084, 1106
DdeI	CTNAG	7 cut(s)	49, 121, 410, 554, 573, 963, 1107
DpnI	GATC	7 cut(s)	211, 249, 560, 752, 870, 968, 1091
DpnII	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	35, 324
EarI	CTCTTC	2 cut(s)	35, 324
Eco31I	GGTCTC	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	592
EcoRI	GAATTC	2 cut(s)	4, 835
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	1 cut(s)	248
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	1 cut(s)	244
FauI	CCCGC	1 cut(s)	885
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	473, 544, 1085
FokI	GGATG	2 cut(s)	776, 931
Fsp4HI	GCNGC	3 cut(s)	473, 544, 1085
FspBI	CTAG	2 cut(s)	549, 1095
GluI	GCNGC	3 cut(s)	473, 544, 1085
GsuI	CTGGAG	1 cut(s)	805
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	1011
Hin1II	CATG	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HindIII	AAGCTT	1 cut(s)	118
HinfI	GANTC	9 cut(s)	285, 314, 333, 406, 504, 590, 648, 667, 941
HpaI	GTTAAC	1 cut(s)	1120
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	124, 154
Hpy166II	GTNNAC	3 cut(s)	181, 1026, 1120
Hpy188I	TCNGA	9 cut(s)	209, 214, 332, 574, 662, 763, 805, 826, 964
Hpy188III	TCNNGA	7 cut(s)	282, 296, 562, 645, 948, 970, 981
Hpy8I	GTNNAC	3 cut(s)	181, 1026, 1120
Hpy99I	CGWCG	1 cut(s)	865
HpyAV	CCTTC	2 cut(s)	617, 692
HpyCH4III	ACNGT	3 cut(s)	224, 958, 976
HpyCH4IV	ACGT	2 cut(s)	482, 812
HpyCH4V	TGCA	3 cut(s)	429, 733, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	472, 1049, 1081
HpyF3I	CTNAG	7 cut(s)	49, 121, 410, 554, 573, 963, 1107
HpySE526I	ACGT	2 cut(s)	482, 812
Hsp92II	CATG	1 cut(s)	248
KspAI	GTTAAC	1 cut(s)	1120
Kzo9I	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
LpnPI	CCDG	7 cut(s)	148, 241, 276, 473, 733, 769, 961
Lsp1109I	GCAGC	3 cut(s)	484, 555, 1071
LweI	GCATC	1 cut(s)	754
MaeI	CTAG	2 cut(s)	549, 1095
MaeII	ACGT	2 cut(s)	482, 812
MaeIII	GTNAC	2 cut(s)	884, 1045
MalI	GATC	7 cut(s)	211, 249, 560, 752, 870, 968, 1091
MboI	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
MflI	RGATCY	1 cut(s)	558
MluCI	AATT	4 cut(s)	4, 389, 835, 1036
MlyI	GAGTC	3 cut(s)	513, 584, 935
MmeI	TCCRAC	2 cut(s)	579, 976
MroXI	GAANNNNTTC	3 cut(s)	191, 318, 958
MseI	TTAA	4 cut(s)	774, 930, 1119, 1164
MspA1I	CMGCKG	1 cut(s)	783
MspI	CCGG	1 cut(s)	135
MvnI	CGCG	3 cut(s)	185, 618, 1022
MwoI	GCNNNNNNNGC	3 cut(s)	472, 1049, 1081
NdeII	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
NlaIII	CATG	1 cut(s)	248
NspV	TTCGAA	1 cut(s)	393
PaeR7I	CTCGAG	1 cut(s)	592
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 247
PdmI	GAANNNNTTC	3 cut(s)	191, 318, 958
PfeI	GAWTC	6 cut(s)	285, 314, 333, 406, 648, 667
PkrI	GCNGC	3 cut(s)	474, 545, 1086
Ple19I	CGATCG	1 cut(s)	1092
PleI	GAGTC	3 cut(s)	512, 584, 935
PpsI	GAGTC	3 cut(s)	512, 584, 935
Ppu21I	YACGTR	1 cut(s)	483
PspXI	VCTCGAGB	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	558
PvuI	CGATCG	1 cut(s)	1092
SaqAI	TTAA	4 cut(s)	774, 930, 1119, 1164
SatI	GCNGC	3 cut(s)	473, 544, 1085
Sau3AI	GATC	7 cut(s)	209, 247, 558, 750, 868, 966, 1089
SchI	GAGTC	3 cut(s)	513, 584, 935
SfaNI	GCATC	1 cut(s)	754
SfcI	CTRYAG	1 cut(s)	1006
Sfr274I	CTCGAG	1 cut(s)	592
SfuI	TTCGAA	1 cut(s)	393
SlaI	CTCGAG	1 cut(s)	592
SmlI	CTYRAG	3 cut(s)	467, 592, 689
SmoI	CTYRAG	3 cut(s)	467, 592, 689
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	4 cut(s)	4, 389, 835, 1036
SsiI	CCGC	5 cut(s)	781, 892, 992, 1020, 1075
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	549, 1095
TaaI	ACNGT	3 cut(s)	224, 958, 976
TaiI	ACGT	2 cut(s)	485, 815
TaqI	TCGA	5 cut(s)	312, 393, 593, 714, 871
TaqII	GACCGA	2 cut(s)	233, 264
TasI	AATT	4 cut(s)	4, 389, 835, 1036
TfiI	GAWTC	6 cut(s)	285, 314, 333, 406, 648, 667
Tru1I	TTAA	4 cut(s)	774, 930, 1119, 1164
Tru9I	TTAA	4 cut(s)	774, 930, 1119, 1164
TscAI	CASTG	3 cut(s)	229, 467, 1115
TseI	GCWGC	3 cut(s)	472, 543, 1084
TspDTI	ATGAA	5 cut(s)	17, 28, 431, 789, 929
TspGWI	ACGGA	1 cut(s)	1073
TspRI	CASTG	3 cut(s)	229, 467, 1115
XapI	RAATTY	3 cut(s)	4, 389, 835
XhoI	CTCGAG	1 cut(s)	592
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	3 cut(s)	191, 318, 958
XspI	CTAG	2 cut(s)	549, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.