Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Forward (+)

19938872 .. 19940471

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G224300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTACATACAGCTCCTTTTTTCCTTTACAGAATGCTTTCCAAAGATTATTAGAATTCTGGGCCAGTTTCAAAATTTCAACTTTCCAATGTTTCATTCAAGCTTGATTGTTTTACTTCTCAACTGTGTGGTCTTCCATGTTGAAGCACAAATCTCAGGGTCAAATTTTCCTTCTGATGAACAGTCAAATTTTGAACCAAGTGTTGCTGTGGTTATTGGTATTCTCGCTATCATGTTCGCGTTAACTTTTGTTCTCCTTGTCTATGCTAAGTTCTGCCACAGAAGAGCTTATGTTGGTGGCAACAATCACCGAAGAACAGAAGTTATCAGCACAAGCTCTCGATTTTCCGGTATTGACAAGACAGTGATTGAGGCACTTCCTTATTTCAGATTCTCCTCTCTTAGAGGGTCCAAGGAAGGTCTTGAATGTTCAGTCTGCCTGTCAAAATTCGAAGATATTGAAGTTCTCAGATTGCTGCCCAAATGCAAACATGCTTTTCACATTAGCTGCATTGATCACTGGCTGGAAAAACACTCAAGCTGTCCTCTGTGCAGGCACAGAATTAGTTCTGAGGACCTAACCTTCATTACCTACTCAGATAGCATGAGGGTCTTCTGGAATAGCCAATCAGAACATCGACAAGACTCAAACATAGAGCTCTTTGTTCAGAGAGAGGAAGATCGCCGCGGTTCTTCAAGGTTCAGCATAGGAAGCAGCTTTCGGAAAACTGAAAAGGCTGTTGATAAAGAAGAGGAATTGCTAATCCTAGAAGAAGGTGCTGATATGTCAAAGGAGGATCAGAAAATCCTGCACAAGCACAAACACAAAATTGTTGTGTCTGATCTTGAGTTTAAGAACAGATGGAGCAATCAACGGGAAATGAGGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

298

Amino Acids

34.6

Weight (kDa)

8.07

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	239, 687
AciI	CCGC	2 cut(s)	685, 687
AclWI	GGATC	1 cut(s)	804
AcsI	RAATTY	5 cut(s)	54, 73, 163, 187, 446
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	8 cut(s)	71, 79, 99, 143, 194, 425, 461, 696
AjuI	GAANNNNNNNTTGG	2 cut(s)	79, 111
AluBI	AGCT	8 cut(s)	13, 102, 287, 336, 507, 540, 658, 717
AluI	AGCT	8 cut(s)	13, 102, 287, 336, 507, 540, 658, 717
Alw21I	GWGCWC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	804
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	3 cut(s)	475, 507, 714
ApoI	RAATTY	5 cut(s)	54, 73, 163, 187, 446
Asp700I	GAANNNNTTC	2 cut(s)	36, 565
AspS9I	GGNCC	3 cut(s)	61, 408, 574
AsuHPI	GGTGA	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	450
AvaII	GGWCC	2 cut(s)	408, 574
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	2 cut(s)	124, 604
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	462, 494, 726
BccI	CCATC	1 cut(s)	855
BclI	TGATCA	1 cut(s)	514
BfaI	CTAG	1 cut(s)	767
BisI	GCNGC	4 cut(s)	476, 508, 685, 715
BlsI	GCNGC	4 cut(s)	477, 509, 686, 716
Bme18I	GGWCC	2 cut(s)	408, 574
BmgT120I	GGNCC	3 cut(s)	61, 408, 574
BmiI	GGNNCC	1 cut(s)	409
BpiI	GAAGAC	2 cut(s)	124, 604
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	520, 866
BsaJI	CCNNGG	2 cut(s)	411, 685
BsaWI	WCCGGW	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	64, 524
BseDI	CCNNGG	2 cut(s)	411, 685
BseMII	CTCAG	4 cut(s)	168, 481, 561, 609
BseNI	ACTGG	2 cut(s)	64, 524
BseRI	GAGGAG	1 cut(s)	385
BseXI	GCAGC	3 cut(s)	462, 494, 726
BsgI	GTGCAG	2 cut(s)	571, 794
Bsh1236I	CGCG	2 cut(s)	239, 687
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	514, 679, 796, 841
BspACI	CCGC	2 cut(s)	685, 687
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	4 cut(s)	167, 480, 562, 608
BspFNI	CGCG	2 cut(s)	239, 687
BspLI	GGNNCC	1 cut(s)	409
BspPI	GGATC	1 cut(s)	804
BspQI	GCTCTTC	1 cut(s)	277
BspT104I	TTCGAA	1 cut(s)	450
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	64, 524
BssECI	CCNNGG	2 cut(s)	411, 685
BssMI	GATC	4 cut(s)	514, 679, 796, 841
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	3 cut(s)	125, 183, 364
Bst6I	CTCTTC	2 cut(s)	277, 744
BstAUI	TGTACA	1 cut(s)	3
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	6 cut(s)	154, 267, 401, 467, 570, 595
BstDSI	CCRYGG	1 cut(s)	685
BstFNI	CGCG	2 cut(s)	239, 687
BstKTI	GATC	4 cut(s)	517, 682, 799, 844
BstMBI	GATC	4 cut(s)	514, 679, 796, 841
BstMWI	GCNNNNNNNGC	1 cut(s)	711
BstNSI	RCATGY	1 cut(s)	494
BstUI	CGCG	2 cut(s)	239, 687
BstV1I	GCAGC	3 cut(s)	462, 494, 726
BstV2I	GAAGAC	2 cut(s)	124, 604
BsuRI	GGCC	1 cut(s)	63
BtgI	CCRYGG	1 cut(s)	685
BtsIMutI	CAGTG	2 cut(s)	369, 517
Cac8I	GCNNGC	1 cut(s)	554
Cfr13I	GGNCC	3 cut(s)	61, 408, 574
Cfr42I	CCGCGG	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	4 cut(s)	137, 232, 491, 604
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	6 cut(s)	154, 267, 401, 467, 570, 595
DpnI	GATC	4 cut(s)	516, 681, 798, 843
DpnII	GATC	4 cut(s)	514, 679, 796, 841
Eam1104I	CTCTTC	2 cut(s)	277, 744
EarI	CTCTTC	2 cut(s)	277, 744
Ecl136II	GAGCTC	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	408, 574
Eco53kI	GAGCTC	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	658
EcoO109I	RGGNCCY	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	140, 235, 494, 607
FatI	CATG	4 cut(s)	136, 231, 490, 603
FbaI	TGATCA	1 cut(s)	514
Fnu4HI	GCNGC	4 cut(s)	476, 508, 685, 715
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	4 cut(s)	476, 508, 685, 715
FspBI	CTAG	1 cut(s)	767
GluI	GCNGC	4 cut(s)	476, 508, 685, 715
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	348
Hin1II	CATG	4 cut(s)	140, 235, 494, 607
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	2 cut(s)	390, 644
HpaI	GTTAAC	1 cut(s)	243
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	4 cut(s)	339, 422, 616, 845
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	4 cut(s)	180, 410, 592, 767
HpyCH4III	ACNGT	3 cut(s)	125, 183, 364
HpyCH4V	TGCA	4 cut(s)	486, 510, 552, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	711
HpyF3I	CTNAG	6 cut(s)	154, 267, 401, 467, 570, 595
Hsp92II	CATG	4 cut(s)	140, 235, 494, 607
Ksp22I	TGATCA	1 cut(s)	514
KspAI	GTTAAC	1 cut(s)	243
KspI	CCGCGG	1 cut(s)	688
Kzo9I	GATC	4 cut(s)	514, 679, 796, 841
LguI	GCTCTTC	1 cut(s)	277
LmnI	GCTCC	2 cut(s)	18, 864
Lsp1109I	GCAGC	3 cut(s)	462, 494, 726
MaeI	CTAG	1 cut(s)	767
MalI	GATC	4 cut(s)	516, 681, 798, 843
MboI	GATC	4 cut(s)	514, 679, 796, 841
MboII	GAAGA	9 cut(s)	124, 294, 324, 464, 604, 684, 689, 761, 782
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	8 cut(s)	54, 73, 163, 187, 446, 561, 755, 828
MlyI	GAGTC	1 cut(s)	638
MroXI	GAANNNNTTC	2 cut(s)	36, 565
MseI	TTAA	2 cut(s)	242, 852
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	38
MvnI	CGCG	2 cut(s)	239, 687
MwoI	GCNNNNNNNGC	1 cut(s)	711
NdeII	GATC	4 cut(s)	514, 679, 796, 841
NlaIII	CATG	4 cut(s)	140, 235, 494, 607
NlaIV	GGNNCC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	450
PciSI	GCTCTTC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	2 cut(s)	36, 565
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	4 cut(s)	477, 509, 686, 716
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
PpuMI	RGGWCCY	1 cut(s)	574
Psp124BI	GAGCTC	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	3 cut(s)	61, 408, 574
PspPPI	RGGWCCY	1 cut(s)	574
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	1 cut(s)	660
SacII	CCGCGG	1 cut(s)	688
SapI	GCTCTTC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	242, 852
SatI	GCNGC	4 cut(s)	476, 508, 685, 715
Sau3AI	GATC	4 cut(s)	514, 679, 796, 841
Sau96I	GGNCC	3 cut(s)	61, 408, 574
SchI	GAGTC	1 cut(s)	638
SduI	GDGCHC	1 cut(s)	660
Sfr303I	CCGCGG	1 cut(s)	688
SfuI	TTCGAA	1 cut(s)	450
SgrBI	CCGCGG	1 cut(s)	688
SinI	GGWCC	2 cut(s)	408, 574
SmlI	CTYRAG	2 cut(s)	535, 845
SmoI	CTYRAG	2 cut(s)	535, 845
Sse9I	AATT	8 cut(s)	54, 73, 163, 187, 446, 561, 755, 828
SsiI	CCGC	2 cut(s)	685, 687
SspMI	CTAG	1 cut(s)	767
SstI	GAGCTC	1 cut(s)	660
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	3 cut(s)	125, 183, 364
TaqI	TCGA	3 cut(s)	340, 450, 637
TasI	AATT	8 cut(s)	54, 73, 163, 187, 446, 561, 755, 828
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	687
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	242, 852
Tru9I	TTAA	2 cut(s)	242, 852
TscAI	CASTG	2 cut(s)	369, 524
TseI	GCWGC	3 cut(s)	475, 507, 714
TspDTI	ATGAA	3 cut(s)	83, 192, 574
TspRI	CASTG	2 cut(s)	369, 524
VpaK11BI	GGWCC	2 cut(s)	408, 574
XapI	RAATTY	5 cut(s)	54, 73, 163, 187, 446
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	36, 565
XspI	CTAG	1 cut(s)	767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.