Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Reverse (-)

4550981 .. 4552294

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG062000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGATTAGAATCTTAGGTCAGTTTCAAGATTATTTCTTTCCAATGTTTCATTCGAGCTTGATTGTTTTGCTTCTCTTTATTTCTGTGCCATTCATGGATGCTGAAGCACAATCTGTAGGCGGTTATGATTCTGAAACAGATCAATCTAATTTTCAACCAAGTGTTGCTGTGGTTATAGGTATTTTAGCCATCATGTTTGCTCTGACTTTTGTTCTCTTAGTGTATGCCAAGTTCTGCCATAGAAGAGTTTCTGTTCATGGCAACCATCACTTGGAAGGGGGGCGTATCGGCACAAGCTCTCGGTTTTCTGGTATTGACAAGACAGTGATTGAGGCACTTCCCTTTTTCAGATTCTCTAATCTTAAAGGGTCAAAGGAAGGGCTAGAATGTGCAGTCTGCCTATCAAAATTTGAAGACATCGAAGTCCTCAGATTGCTTCCCAAGTGCAAGCATGCTTTCCACATTGATTGCATCGATCACTGGCTTGAGAAGCACTCCAGCTGTCCTCTTTGCAGGCACAAGGTCAGTTCTGAGGACCTCACGTTCATTGCATACTCCAACAGTATGAGAGTCTTGTGGGATAGCCAATCAGAGCGGCGAGAAGACTCAAACATTGAGCTCTTTGTTCAGAGAGAGGAAGACCATCGCGGCTCTTCAAGGTTCAGTGTGGGAAGTAGCTTTCGGAAAATGGAAAAGGGCGTTGATACAGGAGAGGAACTGTTGATCCAAGAAGAAGCTGGGATTCTCAAGGAGGAGGATGAGGATGACAAGGTCCTGCACAAACACAAGCACAAAATTGTTGTGTCTGATTTTGTGTTCCAGAACAGATGGAGTAATCTGAGTTCCTCGGACCTCATTTTCTTGAACTCGGAGATGCTTAATACAATGTCAAGCAGTAGATTCTCCACATCAGCTCGTTTAAACAATGAGCAGTTTTCGCCGAGGGAAGCGTCGACAGGAAATGATGAGATTATGAAGATTAGGGAGGAGATGGAGATGAAGAGATTGTTCGAAAACAAAGTCAGCAGCACAATGAACAAAAACAGTACTACTTTAGCAGCTTCAACCCTACCAACTCATGCCTCGAGTTCTATGAATCAAGGTGAGAAGAGATCAATGTCAGAAATCACTGCTCTTTCGAGATTTGGAAACTGGGGTATCAAGAACAGAACCAAAGAGCCTTCATTGCTTGGTAACAATGTGAAAGAGGAAAGAATGAGGCGGCTTTGGTTGCCGATTGCCAGAAGAACAGTCCAATGGTTTGCCAATAGAGAGAAAAGGTCTGAACAGCCTCAACATTCTTCAAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

437

Amino Acids

50.07

Weight (kDa)

6.98

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	129 - 172	7.3e-13	Ring finger domain
zf-RING_11	PF17123	129 - 158	4.4e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	129 - 171	2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	130 - 171	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	132 - 172	2.7e-08	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	145 - 175	7.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccBSI	CCGCTC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	953
AccII	CGCG	1 cut(s)	648
AciI	CCGC	4 cut(s)	120, 595, 648, 1222
AclWI	GGATC	1 cut(s)	718
AcsI	RAATTY	1 cut(s)	407
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	1048
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	7 cut(s)	26, 155, 413, 657, 865, 1065, 1305
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	4 cut(s)	527, 559, 708, 740
AluBI	AGCT	8 cut(s)	57, 297, 501, 619, 678, 737, 914, 1061
AluI	AGCT	8 cut(s)	57, 297, 501, 619, 678, 737, 914, 1061
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	1084
ApeKI	GCWGC	2 cut(s)	1026, 1058
ApoI	RAATTY	1 cut(s)	407
ArsI	GACNNNNNNTTYG	2 cut(s)	1005, 1037
Asp700I	GAANNNNTTC	1 cut(s)	247
AspS9I	GGNCC	3 cut(s)	535, 772, 850
AsuHPI	GGTGA	1 cut(s)	1115
AsuII	TTCGAA	1 cut(s)	1011
AvaI	CYCGRG	1 cut(s)	1084
AvaII	GGWCC	3 cut(s)	535, 772, 850
BaeI	ACNNNNGTAYC	2 cut(s)	1141, 1174
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	3 cut(s)	420, 609, 645
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	1038, 1070
BccI	CCATC	5 cut(s)	197, 273, 651, 822, 985
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	5 cut(s)	596, 649, 1027, 1059, 1223
BlsI	GCNGC	5 cut(s)	597, 650, 1028, 1060, 1224
BmcAI	AGTACT	1 cut(s)	1048
Bme18I	GGWCC	3 cut(s)	535, 772, 850
BmeT110I	CYCGRG	1 cut(s)	1084
BmgT120I	GGNCC	3 cut(s)	535, 772, 850
BmrI	ACTGGG	1 cut(s)	1162
BmsI	GCATC	3 cut(s)	88, 480, 864
BmuI	ACTGGG	1 cut(s)	1162
BpiI	GAAGAC	3 cut(s)	420, 609, 645
BplI	GAGNNNNNCTC	2 cut(s)	479, 511
BpmI	CTGGAG	1 cut(s)	481
Bpu14I	TTCGAA	1 cut(s)	1011
BpuEI	CTTGAG	2 cut(s)	506, 731
Bsa29I	ATCGAT	1 cut(s)	474
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	846, 941
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	485, 1157
Bse3DI	GCAATG	2 cut(s)	546, 1184
Bse8I	GATNNNNATC	1 cut(s)	8
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	846, 941
BseGI	GGATG	3 cut(s)	103, 763, 769
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	546, 1184
BseMII	CTCAG	3 cut(s)	442, 522, 830
BseNI	ACTGG	2 cut(s)	485, 1157
BseRI	GAGGAG	2 cut(s)	767, 1001
BseXI	GCAGC	2 cut(s)	1038, 1070
BseYI	CCCAGC	1 cut(s)	737
BsgI	GTGCAG	2 cut(s)	411, 761
Bsh1236I	CGCG	1 cut(s)	648
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	1084
BslI	CCNNNNNNNGG	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	1084
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	4 cut(s)	139, 475, 723, 1112
BspACI	CCGC	4 cut(s)	120, 595, 648, 1222
BspCNI	CTCAG	3 cut(s)	441, 523, 831
BspDI	ATCGAT	1 cut(s)	474
BspFNI	CGCG	1 cut(s)	648
BspPI	GGATC	1 cut(s)	718
BspQI	GCTCTTC	1 cut(s)	658
BspT104I	TTCGAA	1 cut(s)	1011
BsrBI	CCGCTC	1 cut(s)	595
BsrDI	GCAATG	2 cut(s)	546, 1184
BsrI	ACTGG	2 cut(s)	485, 1157
BssECI	CCNNGG	2 cut(s)	846, 941
BssMI	GATC	4 cut(s)	139, 475, 723, 1112
Bst4CI	ACNGT	5 cut(s)	325, 563, 720, 1046, 1252
Bst6I	CTCTTC	4 cut(s)	238, 658, 995, 1103
BstBI	TTCGAA	1 cut(s)	1011
BstC8I	GCNNGC	3 cut(s)	449, 453, 515
BstDEI	CTNAG	5 cut(s)	13, 217, 428, 531, 839
BstF5I	GGATG	3 cut(s)	103, 763, 769
BstFNI	CGCG	1 cut(s)	648
BstKTI	GATC	4 cut(s)	142, 478, 726, 1115
BstMBI	GATC	4 cut(s)	139, 475, 723, 1112
BstMWI	GCNNNNNNNGC	4 cut(s)	490, 937, 1186, 1231
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	648
BstV1I	GCAGC	2 cut(s)	1038, 1070
BstV2I	GAAGAC	3 cut(s)	420, 609, 645
Bsu15I	ATCGAT	1 cut(s)	474
BsuTUI	ATCGAT	1 cut(s)	474
BtgZI	GCGATG	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	103, 763, 769
BtsI	GCAGTG	1 cut(s)	1128
BtsIMutI	CAGTG	4 cut(s)	330, 478, 670, 1128
Cac8I	GCNNGC	3 cut(s)	449, 453, 515
Cfr13I	GGNCC	3 cut(s)	535, 772, 850
ClaI	ATCGAT	1 cut(s)	474
CseI	GACGC	1 cut(s)	939
Csp6I	GTAC	1 cut(s)	1047
CspCI	CAANNNNNGTGG	2 cut(s)	449, 484
CviAII	CATG	5 cut(s)	94, 193, 257, 452, 1079
CviQI	GTAC	1 cut(s)	1047
DdeI	CTNAG	5 cut(s)	13, 217, 428, 531, 839
DpnI	GATC	4 cut(s)	141, 477, 725, 1114
DpnII	GATC	4 cut(s)	139, 475, 723, 1112
DraI	TTTAAA	1 cut(s)	921
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	4 cut(s)	238, 658, 995, 1103
EarI	CTCTTC	4 cut(s)	238, 658, 995, 1103
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	3 cut(s)	535, 772, 850
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	1084
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	2 cut(s)	535, 772
EcoT38I	GRGCYC	1 cut(s)	621
FaeI	CATG	5 cut(s)	97, 196, 260, 455, 1082
FatI	CATG	5 cut(s)	93, 192, 256, 451, 1078
FblI	GTMKAC	1 cut(s)	953
Fnu4HI	GCNGC	5 cut(s)	596, 649, 1027, 1059, 1223
FokI	GGATG	3 cut(s)	110, 770, 776
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	5 cut(s)	596, 649, 1027, 1059, 1223
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	5 cut(s)	596, 649, 1027, 1059, 1223
GsaI	CCCAGC	1 cut(s)	741
GsuI	CTGGAG	1 cut(s)	481
HgaI	GACGC	1 cut(s)	939
Hin1II	CATG	5 cut(s)	97, 196, 260, 455, 1082
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HinfI	GANTC	8 cut(s)	9, 128, 351, 570, 605, 742, 900, 1096
HphI	GGTGA	1 cut(s)	1115
Hpy166II	GTNNAC	1 cut(s)	954
Hpy188III	TCNNGA	5 cut(s)	26, 820, 862, 1140, 1162
Hpy8I	GTNNAC	1 cut(s)	954
Hpy99I	CGWCG	1 cut(s)	955
HpyAV	CCTTC	3 cut(s)	269, 371, 1191
HpyCH4III	ACNGT	5 cut(s)	325, 563, 720, 1046, 1252
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	6 cut(s)	392, 447, 471, 513, 551, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	490, 937, 1186, 1231
HpyF3I	CTNAG	5 cut(s)	13, 217, 428, 531, 839
HpySE526I	ACGT	1 cut(s)	542
Hsp92II	CATG	5 cut(s)	97, 196, 260, 455, 1082
Kzo9I	GATC	4 cut(s)	139, 475, 723, 1112
LguI	GCTCTTC	1 cut(s)	658
Lsp1109I	GCAGC	2 cut(s)	1038, 1070
LweI	GCATC	3 cut(s)	88, 480, 864
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	1193
MalI	GATC	4 cut(s)	141, 477, 725, 1114
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	4 cut(s)	139, 475, 723, 1112
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	3 cut(s)	148, 407, 795
MlyI	GAGTC	2 cut(s)	579, 599
MmeI	TCCRAC	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	3 cut(s)	363, 879, 920
MspA1I	CMGCKG	1 cut(s)	501
MssI	GTTTAAAC	1 cut(s)	921
MvnI	CGCG	1 cut(s)	648
MwoI	GCNNNNNNNGC	4 cut(s)	490, 937, 1186, 1231
NdeII	GATC	4 cut(s)	139, 475, 723, 1112
NlaIII	CATG	5 cut(s)	97, 196, 260, 455, 1082
NmeAIII	GCCGAG	1 cut(s)	966
NspI	RCATGY	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	1011
PaeI	GCATGC	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	1084
PciSI	GCTCTTC	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	6 cut(s)	9, 128, 351, 742, 900, 1096
PflFI	GACNNNGTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	5 cut(s)	597, 650, 1028, 1060, 1224
PleI	GAGTC	2 cut(s)	578, 599
PmeI	GTTTAAAC	1 cut(s)	921
PpsI	GAGTC	2 cut(s)	578, 599
PpuMI	RGGWCCY	2 cut(s)	535, 772
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	2 cut(s)	535, 772
PspFI	CCCAGC	1 cut(s)	737
PspPI	GGNCC	3 cut(s)	535, 772, 850
PspPPI	RGGWCCY	2 cut(s)	535, 772
PspXI	VCTCGAGB	1 cut(s)	1084
PsrI	GAACNNNNNNTAC	4 cut(s)	215, 247, 826, 858
PsyI	GACNNNGTC	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	501
RsaI	GTAC	1 cut(s)	1048
RsaNI	GTAC	1 cut(s)	1047
SacI	GAGCTC	1 cut(s)	621
SalI	GTCGAC	1 cut(s)	952
SapI	GCTCTTC	1 cut(s)	658
SaqAI	TTAA	3 cut(s)	363, 879, 920
SatI	GCNGC	5 cut(s)	596, 649, 1027, 1059, 1223
Sau3AI	GATC	4 cut(s)	139, 475, 723, 1112
Sau96I	GGNCC	3 cut(s)	535, 772, 850
ScaI	AGTACT	1 cut(s)	1048
SchI	GAGTC	2 cut(s)	579, 599
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	3 cut(s)	88, 480, 864
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	1084
SfuI	TTCGAA	1 cut(s)	1011
SinI	GGWCC	3 cut(s)	535, 772, 850
SlaI	CTCGAG	1 cut(s)	1084
SmlI	CTYRAG	3 cut(s)	485, 746, 1084
SmoI	CTYRAG	3 cut(s)	485, 746, 1084
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	3 cut(s)	148, 407, 795
SsiI	CCGC	4 cut(s)	120, 595, 648, 1222
SspMI	CTAG	1 cut(s)	383
SstI	GAGCTC	1 cut(s)	621
TaaI	ACNGT	5 cut(s)	325, 563, 720, 1046, 1252
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	7 cut(s)	53, 420, 474, 953, 1011, 1085, 1139
TasI	AATT	3 cut(s)	148, 407, 795
TatI	WGTACW	1 cut(s)	1046
TauI	GCSGC	3 cut(s)	598, 651, 1225
TfiI	GAWTC	6 cut(s)	9, 128, 351, 742, 900, 1096
Tru1I	TTAA	3 cut(s)	363, 879, 920
Tru9I	TTAA	3 cut(s)	363, 879, 920
TscAI	CASTG	4 cut(s)	330, 485, 670, 1135
TseI	GCWGC	2 cut(s)	1026, 1058
TspDTI	ATGAA	9 cut(s)	38, 82, 245, 535, 989, 1013, 1049, 1109, 1173
TspRI	CASTG	4 cut(s)	330, 485, 670, 1135
Tth111I	GACNNNGTC	1 cut(s)	770
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	535, 772, 850
XapI	RAATTY	1 cut(s)	407
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734
XhoI	CTCGAG	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	953
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.