Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Reverse (-)

4708665 .. 4709963

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1058700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGATTAGAATTTTGGGTCAGTCTCAAAATTTCAAATTTCCAAAGTTTCATTCAAGTTTGATTGGTTTTTTGCTTCTGAGTTTTCTGGTGTTCCATGTAGAAGCACAACCTACAGGCATAGAATATTCTACTGATGAACAACTAAATTTTCAACCAAGTGTTGCTTTGGTGATTGGAGTTCTAGCAATCTTCTTTTTACTGACTTTTGTCCTCCTTGTATATGTGAAATTCTGCCACAGAAGCGCTTATGTGGTAGGAAACAACCATCTCCGGTCAACAGGACTTGTCACCGCAAGCGCTCGATTTTCCGGTATTGACAAGACAGTGATTGAGGCCCTTCCCTTTTTCAAATTTTCTTCACTGAAAGGGTCGAAAGAAGGCCTCGAATGCGCAGTCTGCCTGTCGAAATTCGAAGATATTGAAATCCTCAGGCTGCTTCCCAAATGCAAACATGCTTTTCACATCAGCTGCATTGATTACTGGCTTGAAAAGCACTCAAGCTGTCCTCTCTGCAGGCACAGGGTTAGTTCTGAGGACTTAACTTCCATTACCTACTCAAACAGCATGAGGTGGATTAATCAATCAGAGCGCCGCCAGGACTCGAACATAGAGCTCTTTGTTCAGAGAGAGGAGGATCACAGCGGTTCTTCAAGATTCAGTGTAGGAAGCAGCTTTCGAAAAGTTGAAAATGTGATTGATGACGAACTGTTGATCCAAGAAGTTGCTGATGTGACAGAGGAAGGTCAGAAAGTCCTGCACAAGCACAAGCACAAAATTGTTGTTTCGGATCTTGAGTTTAAGAACAGATGGAGCAATGTGAGTTCCGCTGACCTCCTGTTCTTGAATTCTGAGATGCTTAACACGATGTCAAGCGATAGGTTCTCTTTCAGAGATTTAAATGATGAGCAGTTTTCGCCCACGAAAGCAACAGGAAATCAGGAGATTGTGAAGATTAGGGAGGAGATGGAGATGAAGAGATTGTTTGAGGACAAATTTAGTACAATGAGTGAACATAGTTCAGCTTTGGTTCCTTCTGCTTCAGTTAGCATAGAGACGTCAGCTCATGCCTCAAGTTCTGTGAATCAAGGCGAGAAAAGATCCATGTCCGAAATCACTGGTCTTTCGAGATTTGGGAATTTGGGTTCTAAGAACAGGACTAGAGAGCTTTCTCTGCTTGAAAACAATGCAAAGGAGGAAAGAATGAGGCGGCTTTGGTTGCCGATTGCCAGAAGAACAGTCCACTGGTTTGCCAACAGAGAGAAAAGGTCTCCACAGCCTCAACGGCCTTTAGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

433

Amino Acids

49.44

Weight (kDa)

8.11

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	129 - 172	2.2e-12	Ring finger domain
zf-C3HC4_2	PF13923	129 - 171	5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	129 - 158	9.1e-08	RING-like zinc finger
zf-C3HC4	PF00097	130 - 171	9.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	133 - 172	2.5e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1058
Acc16I	TGCGCA	1 cut(s)	391
AciI	CCGC	5 cut(s)	291, 592, 642, 825, 1207
AclWI	GGATC	4 cut(s)	642, 706, 795, 1092
AcuI	CTGAAG	1 cut(s)	1023
AcyI	GRCGYC	1 cut(s)	1055
AfaI	GTAC	1 cut(s)	1000
AfeI	AGCGCT	2 cut(s)	244, 298
AjnI	CCWGG	1 cut(s)	594
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AloI	GAACNNNNNNTCC	4 cut(s)	696, 728, 1126, 1158
AluBI	AGCT	7 cut(s)	468, 501, 613, 672, 1022, 1061, 1165
AluI	AGCT	7 cut(s)	468, 501, 613, 672, 1022, 1061, 1165
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	3 cut(s)	27, 1046, 1272
AlwI	GGATC	4 cut(s)	642, 706, 795, 1092
Aor51HI	AGCGCT	2 cut(s)	244, 298
AoxI	GGCC	3 cut(s)	333, 379, 1283
ApeKI	GCWGC	3 cut(s)	433, 468, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	378, 410
AseI	ATTAAT	1 cut(s)	576
AspLEI	GCGC	4 cut(s)	245, 299, 392, 591
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	181, 280
AsuII	TTCGAA	2 cut(s)	411, 676
AxyI	CCTNAGG	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	3 cut(s)	420, 455, 681
BccI	CCATC	3 cut(s)	273, 801, 958
BciT130I	CCWGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	27, 1046, 1272
BfaI	CTAG	2 cut(s)	182, 1158
BfmI	CTRYAG	2 cut(s)	111, 511
BfoI	RGCGCY	3 cut(s)	246, 300, 592
BglI	GCCNNNNNGGC	1 cut(s)	1282
BisI	GCNGC	5 cut(s)	434, 469, 592, 670, 1208
BlsI	GCNGC	5 cut(s)	435, 470, 593, 671, 1209
Bme1390I	CCNGG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	1029
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	843
BoxI	GACNNNNGTC	1 cut(s)	206
Bpu14I	TTCGAA	2 cut(s)	411, 676
BpuEI	CTTGAG	3 cut(s)	481, 812, 1054
BsaHI	GRCGYC	1 cut(s)	1055
BsaI	GGTCTC	1 cut(s)	1272
BsaWI	WCCGGW	2 cut(s)	270, 308
Bse1I	ACTGG	3 cut(s)	485, 1120, 1247
Bse21I	CCTNAGG	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	820
BseBI	CCWGG	1 cut(s)	596
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	4 cut(s)	68, 442, 522, 840
BseNI	ACTGG	3 cut(s)	485, 1120, 1247
BseRI	GAGGAG	2 cut(s)	644, 974
BseXI	GCAGC	3 cut(s)	420, 455, 681
BsgI	GTGCAG	1 cut(s)	740
BshFI	GGCC	3 cut(s)	335, 381, 1285
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	2 cut(s)	271, 309
BsmAI	GTCTC	3 cut(s)	27, 1046, 1272
BsmBI	CGTCTC	1 cut(s)	1046
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	335, 381, 1285
Bso31I	GGTCTC	1 cut(s)	1272
Bsp119I	TTCGAA	2 cut(s)	411, 676
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	634, 711, 787, 1097
BspACI	CCGC	5 cut(s)	291, 592, 642, 825, 1207
BspANI	GGCC	3 cut(s)	335, 381, 1285
BspCNI	CTCAG	4 cut(s)	69, 441, 523, 841
BspLI	GGNNCC	1 cut(s)	1029
BspMAI	CTGCAG	1 cut(s)	515
BspPI	GGATC	4 cut(s)	642, 706, 795, 1092
BspT104I	TTCGAA	2 cut(s)	411, 676
BspTNI	GGTCTC	1 cut(s)	1272
BsrDI	GCAATG	1 cut(s)	820
BsrI	ACTGG	3 cut(s)	485, 1120, 1247
BssMI	GATC	4 cut(s)	634, 711, 787, 1097
BssNI	GRCGYC	1 cut(s)	1055
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	325, 708, 1237
Bst6I	CTCTTC	1 cut(s)	968
BstACI	GRCGYC	1 cut(s)	1055
BstBI	TTCGAA	2 cut(s)	411, 676
BstC8I	GCNNGC	2 cut(s)	295, 515
BstDEI	CTNAG	5 cut(s)	77, 428, 531, 849, 1146
BstH2I	RGCGCY	3 cut(s)	246, 300, 592
BstHHI	GCGC	4 cut(s)	245, 299, 392, 591
BstKTI	GATC	4 cut(s)	637, 714, 790, 1100
BstMAI	GTCTC	3 cut(s)	27, 1046, 1272
BstMBI	GATC	4 cut(s)	634, 711, 787, 1097
BstMWI	GCNNNNNNNGC	8 cut(s)	240, 387, 396, 490, 913, 1171, 1216, 1282
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	455
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	2 cut(s)	111, 511
BstV1I	GCAGC	3 cut(s)	420, 455, 681
BstX2I	RGATCY	2 cut(s)	787, 1097
BstYI	RGATCY	2 cut(s)	787, 1097
Bsu36I	CCTNAGG	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	335, 381, 1285
BtsIMutI	CAGTG	5 cut(s)	330, 359, 664, 1113, 1240
Cac8I	GCNNGC	2 cut(s)	295, 515
CfoI	GCGC	4 cut(s)	245, 299, 392, 591
Cfr13I	GGNCC	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	999
CviAII	CATG	5 cut(s)	95, 452, 565, 1064, 1102
CviQI	GTAC	1 cut(s)	999
DdeI	CTNAG	5 cut(s)	77, 428, 531, 849, 1146
DpnI	GATC	4 cut(s)	636, 713, 789, 1099
DpnII	GATC	4 cut(s)	634, 711, 787, 1097
DraI	TTTAAA	1 cut(s)	897
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
Ecl136II	GAGCTC	1 cut(s)	613
Eco147I	AGGCCT	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	1272
Eco47III	AGCGCT	2 cut(s)	244, 298
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	1023
Eco81I	CCTNAGG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	613
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	844
EcoRII	CCWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	615
Esp3I	CGTCTC	1 cut(s)	1046
FaeI	CATG	5 cut(s)	98, 455, 568, 1067, 1105
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FatI	CATG	5 cut(s)	94, 451, 564, 1063, 1101
Fnu4HI	GCNGC	5 cut(s)	434, 469, 592, 670, 1208
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	5 cut(s)	434, 469, 592, 670, 1208
FspBI	CTAG	2 cut(s)	182, 1158
FspI	TGCGCA	1 cut(s)	391
GlaI	GCGC	4 cut(s)	244, 298, 391, 590
GluI	GCNGC	5 cut(s)	434, 469, 592, 670, 1208
HaeII	RGCGCY	3 cut(s)	246, 300, 592
HaeIII	GGCC	3 cut(s)	335, 381, 1285
HapII	CCGG	2 cut(s)	271, 309
HhaI	GCGC	4 cut(s)	245, 299, 392, 591
Hin1I	GRCGYC	1 cut(s)	1055
Hin1II	CATG	5 cut(s)	98, 455, 568, 1067, 1105
Hin6I	GCGC	4 cut(s)	243, 297, 390, 589
HinP1I	GCGC	4 cut(s)	243, 297, 390, 589
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HinfI	GANTC	3 cut(s)	599, 654, 1081
HpaII	CCGG	2 cut(s)	271, 309
HphI	GGTGA	2 cut(s)	181, 280
Hpy166II	GTNNAC	3 cut(s)	276, 1010, 1240
Hpy188I	TCNGA	9 cut(s)	78, 532, 586, 624, 747, 787, 850, 890, 1108
Hpy188III	TCNNGA	5 cut(s)	651, 791, 841, 938, 1125
Hpy8I	GTNNAC	3 cut(s)	276, 1010, 1240
HpyAV	CCTTC	4 cut(s)	347, 371, 734, 1041
HpyCH4III	ACNGT	3 cut(s)	325, 708, 1237
HpyCH4IV	ACGT	1 cut(s)	1055
HpyCH4V	TGCA	5 cut(s)	447, 471, 513, 757, 1187
HpyF10VI	GCNNNNNNNGC	8 cut(s)	240, 387, 396, 490, 913, 1171, 1216, 1282
HpyF3I	CTNAG	5 cut(s)	77, 428, 531, 849, 1146
HpySE526I	ACGT	1 cut(s)	1055
Hsp92I	GRCGYC	1 cut(s)	1055
Hsp92II	CATG	5 cut(s)	98, 455, 568, 1067, 1105
HspAI	GCGC	4 cut(s)	243, 297, 390, 589
Kzo9I	GATC	4 cut(s)	634, 711, 787, 1097
LmnI	GCTCC	1 cut(s)	810
Lsp1109I	GCAGC	3 cut(s)	420, 455, 681
LweI	GCATC	1 cut(s)	843
MaeI	CTAG	2 cut(s)	182, 1158
MaeII	ACGT	1 cut(s)	1055
MaeIII	GTNAC	2 cut(s)	286, 730
MalI	GATC	4 cut(s)	636, 713, 789, 1099
MboI	GATC	4 cut(s)	634, 711, 787, 1097
MboII	GAAGA	7 cut(s)	181, 348, 425, 639, 961, 985, 1242
MflI	RGATCY	2 cut(s)	787, 1097
MhlI	GDGCHC	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	593
MseI	TTAA	5 cut(s)	539, 576, 798, 858, 896
MspA1I	CMGCKG	3 cut(s)	468, 642, 827
MspI	CCGG	2 cut(s)	271, 309
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	8 cut(s)	240, 387, 396, 490, 913, 1171, 1216, 1282
NdeII	GATC	4 cut(s)	634, 711, 787, 1097
NlaIII	CATG	5 cut(s)	98, 455, 568, 1067, 1105
NlaIV	GGNNCC	1 cut(s)	1029
NmuCI	GTSAC	2 cut(s)	286, 730
NsbI	TGCGCA	1 cut(s)	391
NspI	RCATGY	1 cut(s)	455
NspV	TTCGAA	2 cut(s)	411, 676
PceI	AGGCCT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	392
PfeI	GAWTC	2 cut(s)	654, 1081
PkrI	GCNGC	5 cut(s)	435, 470, 593, 671, 1209
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
PshAI	GACNNNNGTC	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	1029
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	515
PsuI	RGATCY	2 cut(s)	787, 1097
PvuII	CAGCTG	1 cut(s)	468
RsaI	GTAC	1 cut(s)	1000
RsaNI	GTAC	1 cut(s)	999
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	5 cut(s)	539, 576, 798, 858, 896
SatI	GCNGC	5 cut(s)	434, 469, 592, 670, 1208
Sau3AI	GATC	4 cut(s)	634, 711, 787, 1097
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	615
SfaNI	GCATC	1 cut(s)	843
SfcI	CTRYAG	2 cut(s)	111, 511
SfuI	TTCGAA	2 cut(s)	411, 676
SmiI	ATTTAAAT	1 cut(s)	897
SmlI	CTYRAG	3 cut(s)	496, 791, 1069
SmoI	CTYRAG	3 cut(s)	496, 791, 1069
SseBI	AGGCCT	1 cut(s)	381
SsiI	CCGC	5 cut(s)	291, 592, 642, 825, 1207
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	2 cut(s)	182, 1158
SstI	GAGCTC	1 cut(s)	615
StuI	AGGCCT	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	594
SwaI	ATTTAAAT	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	325, 708, 1237
TaiI	ACGT	1 cut(s)	1058
TaqI	TCGA	8 cut(s)	301, 371, 384, 404, 411, 602, 676, 1124
TatI	WGTACW	1 cut(s)	998
TauI	GCSGC	2 cut(s)	594, 1210
TfiI	GAWTC	2 cut(s)	654, 1081
Tru1I	TTAA	5 cut(s)	539, 576, 798, 858, 896
Tru9I	TTAA	5 cut(s)	539, 576, 798, 858, 896
TscAI	CASTG	5 cut(s)	330, 366, 664, 1120, 1247
TseFI	GTSAC	2 cut(s)	286, 730
TseI	GCWGC	3 cut(s)	433, 468, 669
Tsp45I	GTSAC	2 cut(s)	286, 730
TspDTI	ATGAA	3 cut(s)	38, 150, 986
TspRI	CASTG	5 cut(s)	330, 366, 664, 1120, 1247
VspI	ATTAAT	1 cut(s)	576
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	2 cut(s)	182, 1158
ZraI	GACGTC	1 cut(s)	1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.