Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000333.1

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Forward (+)

8454 .. 9674

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000333.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atggatgctgaagcacaatctgtaggcggttatgattctgaaacagatcaatctaattttcaaccaagtgttgctgtggttataggtattttagccgtcatgtttgctctgacttttgttctcttagtgtatgccaagttctgccatagaagagtttctgttcatggcaaccatcacttggaaggggggcgtatcggcacaagctctcggttttctggtattgataagacagtgattgaggcacttccctttttcagattctctaatcttaaagggtcaaaggaagggctagaatgtgcagtctgcctatcaaaatttgaagacatcgaagtcctcagattgcttcccaagtgcaagcatgctttccacattgattgcatcgatcactggcttgagaagcactccagctgtcctctttgcaggcacaaggtcagttctgaggacctcacgttcattgcatactccaacagtatgagagtattgtgggatagccaatcagagcggcgagaagactcaaacattgagctctttgttcagagagaggaagaccaccgcggctcttcaaggttcagtgtgggaagtagctttcggaaaatggaaaagggcgttgatacaggagaggaactgttgatccaagaagaagctgggattctcaaggaggaggaggaggatgacaaggtcctgcacaaacacaagcacaaaattgttgtgtctgattttgtgttccagaacagatggagtaatctgagttcctcggacctcattttcttgaactcggagatgcttaatacaatgtcaagcagtagattctccacatcagctcgtttaaacaatgagcagttttcgccgagggaagcgtcgacaggaaatgatgagattatgaagattagggaggagatggagatgaagagattgttcgaaaacaaagtcagcagcacaatgaacaaaaacagtactactttagcagcttcaaccctaccaactcatgcctcgagttctatgaatcaaggtcagaagagatcaatgtcggaaatcactgctctttcgagatttggaaactggggtatcaagaacagaaccaaagagccttcattgcttggtaacaatgtgaaagaggaaagaatgaggcggctttggttgccgattgccagaagaacagtccaatggtttgccaatagagagaaaaggtctgaacagcctcaacattcttcaaatgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

406

Amino Acids

46.36

Weight (kDa)

7.26

Isoelectric Point (pI)

67.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	860
AccII	CGCG	1 cut(s)	555
AciI	CCGC	5 cut(s)	27, 502, 553, 555, 1129
AclWI	GGATC	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	955
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	6 cut(s)	62, 320, 564, 772, 972, 1212
AloI	GAACNNNNNNTCC	4 cut(s)	434, 466, 615, 647
AluBI	AGCT	7 cut(s)	204, 408, 526, 585, 644, 821, 968
AluI	AGCT	7 cut(s)	204, 408, 526, 585, 644, 821, 968
Alw21I	GWGCWC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	625
Ama87I	CYCGRG	1 cut(s)	991
ApeKI	GCWGC	2 cut(s)	933, 965
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	912, 944
Asp700I	GAANNNNTTC	1 cut(s)	154
AspS9I	GGNCC	3 cut(s)	442, 679, 757
AsuII	TTCGAA	1 cut(s)	918
AvaI	CYCGRG	1 cut(s)	991
AvaII	GGWCC	3 cut(s)	442, 679, 757
BaeI	ACNNNNGTAYC	2 cut(s)	1048, 1081
BanII	GRGCYC	1 cut(s)	528
BbsI	GAAGAC	3 cut(s)	327, 516, 552
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	945, 977
BccI	CCATC	3 cut(s)	180, 729, 892
BceAI	ACGGC	1 cut(s)	80
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	5 cut(s)	503, 556, 934, 966, 1130
BlsI	GCNGC	5 cut(s)	504, 557, 935, 967, 1131
BmcAI	AGTACT	1 cut(s)	955
Bme18I	GGWCC	3 cut(s)	442, 679, 757
BmeT110I	CYCGRG	1 cut(s)	991
BmgT120I	GGNCC	3 cut(s)	442, 679, 757
BmrI	ACTGGG	1 cut(s)	1069
BmsI	GCATC	2 cut(s)	387, 771
BmuI	ACTGGG	1 cut(s)	1069
BpiI	GAAGAC	3 cut(s)	327, 516, 552
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	388
Bpu14I	TTCGAA	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	413, 638
Bsa29I	ATCGAT	1 cut(s)	381
BsaJI	CCNNGG	3 cut(s)	553, 753, 848
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	392, 1064
Bse3DI	GCAATG	2 cut(s)	453, 1091
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	553, 753, 848
BseGI	GGATG	2 cut(s)	10, 676
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	2 cut(s)	453, 1091
BseMII	CTCAG	3 cut(s)	349, 429, 737
BseNI	ACTGG	2 cut(s)	392, 1064
BseRI	GAGGAG	4 cut(s)	674, 677, 680, 908
BseXI	GCAGC	2 cut(s)	945, 977
BseYI	CCCAGC	1 cut(s)	644
BsgI	GTGCAG	2 cut(s)	318, 668
Bsh1236I	CGCG	1 cut(s)	555
BshVI	ATCGAT	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	991
BslI	CCNNNNNNNGG	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	991
Bsp119I	TTCGAA	1 cut(s)	918
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	4 cut(s)	46, 382, 630, 1019
BspACI	CCGC	5 cut(s)	27, 502, 553, 555, 1129
BspCNI	CTCAG	3 cut(s)	348, 430, 738
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	555
BspPI	GGATC	1 cut(s)	625
BspQI	GCTCTTC	1 cut(s)	565
BspT104I	TTCGAA	1 cut(s)	918
BsrBI	CCGCTC	1 cut(s)	502
BsrDI	GCAATG	2 cut(s)	453, 1091
BsrI	ACTGG	2 cut(s)	392, 1064
BssECI	CCNNGG	3 cut(s)	553, 753, 848
BssMI	GATC	4 cut(s)	46, 382, 630, 1019
Bst4CI	ACNGT	5 cut(s)	232, 470, 627, 953, 1159
Bst6I	CTCTTC	4 cut(s)	145, 565, 902, 1010
BstBI	TTCGAA	1 cut(s)	918
BstC8I	GCNNGC	3 cut(s)	356, 360, 422
BstDEI	CTNAG	4 cut(s)	124, 335, 438, 746
BstDSI	CCRYGG	1 cut(s)	553
BstF5I	GGATG	2 cut(s)	10, 676
BstFNI	CGCG	1 cut(s)	555
BstKTI	GATC	4 cut(s)	49, 385, 633, 1022
BstMBI	GATC	4 cut(s)	46, 382, 630, 1019
BstMWI	GCNNNNNNNGC	4 cut(s)	397, 844, 1093, 1138
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	21
BstUI	CGCG	1 cut(s)	555
BstV1I	GCAGC	2 cut(s)	945, 977
BstV2I	GAAGAC	3 cut(s)	327, 516, 552
Bsu15I	ATCGAT	1 cut(s)	381
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	553
BtsCI	GGATG	2 cut(s)	10, 676
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	4 cut(s)	237, 385, 577, 1035
Cac8I	GCNNGC	3 cut(s)	356, 360, 422
Cfr13I	GGNCC	3 cut(s)	442, 679, 757
Cfr42I	CCGCGG	1 cut(s)	556
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	1 cut(s)	846
Csp6I	GTAC	1 cut(s)	954
CspCI	CAANNNNNGTGG	2 cut(s)	356, 391
CviAII	CATG	4 cut(s)	100, 164, 359, 986
CviQI	GTAC	1 cut(s)	954
DdeI	CTNAG	4 cut(s)	124, 335, 438, 746
DpnI	GATC	4 cut(s)	48, 384, 632, 1021
DpnII	GATC	4 cut(s)	46, 382, 630, 1019
DraI	TTTAAA	1 cut(s)	828
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
Eam1104I	CTCTTC	4 cut(s)	145, 565, 902, 1010
EarI	CTCTTC	4 cut(s)	145, 565, 902, 1010
Ecl136II	GAGCTC	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	528
Eco47I	GGWCC	3 cut(s)	442, 679, 757
Eco53kI	GAGCTC	1 cut(s)	526
Eco57I	CTGAAG	1 cut(s)	30
Eco88I	CYCGRG	1 cut(s)	991
EcoICRI	GAGCTC	1 cut(s)	526
EcoO109I	RGGNCCY	2 cut(s)	442, 679
EcoT38I	GRGCYC	1 cut(s)	528
FaeI	CATG	4 cut(s)	103, 167, 362, 989
FatI	CATG	4 cut(s)	99, 163, 358, 985
FblI	GTMKAC	1 cut(s)	860
Fnu4HI	GCNGC	5 cut(s)	503, 556, 934, 966, 1130
FokI	GGATG	2 cut(s)	17, 683
FriOI	GRGCYC	1 cut(s)	528
Fsp4HI	GCNGC	5 cut(s)	503, 556, 934, 966, 1130
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	5 cut(s)	503, 556, 934, 966, 1130
GsaI	CCCAGC	1 cut(s)	648
GsuI	CTGGAG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	846
Hin1II	CATG	4 cut(s)	103, 167, 362, 989
HincII	GTYRAC	1 cut(s)	861
HindII	GTYRAC	1 cut(s)	861
HinfI	GANTC	6 cut(s)	35, 258, 512, 649, 807, 1003
Hpy166II	GTNNAC	1 cut(s)	861
Hpy188III	TCNNGA	4 cut(s)	727, 769, 1047, 1069
Hpy8I	GTNNAC	1 cut(s)	861
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	3 cut(s)	176, 278, 1098
HpyCH4III	ACNGT	5 cut(s)	232, 470, 627, 953, 1159
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	299, 354, 378, 420, 458, 685
HpyF10VI	GCNNNNNNNGC	4 cut(s)	397, 844, 1093, 1138
HpyF3I	CTNAG	4 cut(s)	124, 335, 438, 746
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	4 cut(s)	103, 167, 362, 989
KspI	CCGCGG	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	46, 382, 630, 1019
LguI	GCTCTTC	1 cut(s)	565
Lsp1109I	GCAGC	2 cut(s)	945, 977
LweI	GCATC	2 cut(s)	387, 771
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	1 cut(s)	1100
MalI	GATC	4 cut(s)	48, 384, 632, 1021
MbiI	CCGCTC	1 cut(s)	502
MboI	GATC	4 cut(s)	46, 382, 630, 1019
MhlI	GDGCHC	1 cut(s)	528
MluCI	AATT	3 cut(s)	55, 314, 702
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	489, 1008
MroXI	GAANNNNTTC	1 cut(s)	154
MseI	TTAA	3 cut(s)	270, 786, 827
MspA1I	CMGCKG	2 cut(s)	408, 555
MssI	GTTTAAAC	1 cut(s)	828
MvnI	CGCG	1 cut(s)	555
MwoI	GCNNNNNNNGC	4 cut(s)	397, 844, 1093, 1138
NdeII	GATC	4 cut(s)	46, 382, 630, 1019
NlaIII	CATG	4 cut(s)	103, 167, 362, 989
NmeAIII	GCCGAG	1 cut(s)	873
NspI	RCATGY	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	918
PaeI	GCATGC	1 cut(s)	362
PaeR7I	CTCGAG	1 cut(s)	991
PciSI	GCTCTTC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	154
PfeI	GAWTC	5 cut(s)	35, 258, 649, 807, 1003
PflFI	GACNNNGTC	1 cut(s)	677
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	5 cut(s)	504, 557, 935, 967, 1131
PleI	GAGTC	1 cut(s)	506
PmeI	GTTTAAAC	1 cut(s)	828
PpsI	GAGTC	1 cut(s)	506
PpuMI	RGGWCCY	2 cut(s)	442, 679
Psp124BI	GAGCTC	1 cut(s)	528
Psp5II	RGGWCCY	2 cut(s)	442, 679
PspFI	CCCAGC	1 cut(s)	644
PspPI	GGNCC	3 cut(s)	442, 679, 757
PspPPI	RGGWCCY	2 cut(s)	442, 679
PspXI	VCTCGAGB	1 cut(s)	991
PsrI	GAACNNNNNNTAC	4 cut(s)	122, 154, 733, 765
PsyI	GACNNNGTC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	1 cut(s)	955
RsaNI	GTAC	1 cut(s)	954
SacI	GAGCTC	1 cut(s)	528
SacII	CCGCGG	1 cut(s)	556
SalI	GTCGAC	1 cut(s)	859
SapI	GCTCTTC	1 cut(s)	565
SaqAI	TTAA	3 cut(s)	270, 786, 827
SatI	GCNGC	5 cut(s)	503, 556, 934, 966, 1130
Sau3AI	GATC	4 cut(s)	46, 382, 630, 1019
Sau96I	GGNCC	3 cut(s)	442, 679, 757
ScaI	AGTACT	1 cut(s)	955
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	387, 771
SfcI	CTRYAG	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	991
Sfr303I	CCGCGG	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	918
SgrBI	CCGCGG	1 cut(s)	556
SinI	GGWCC	3 cut(s)	442, 679, 757
SlaI	CTCGAG	1 cut(s)	991
SmlI	CTYRAG	3 cut(s)	392, 653, 991
SmoI	CTYRAG	3 cut(s)	392, 653, 991
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	3 cut(s)	55, 314, 702
SsiI	CCGC	5 cut(s)	27, 502, 553, 555, 1129
SspMI	CTAG	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	232, 470, 627, 953, 1159
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	6 cut(s)	327, 381, 860, 918, 992, 1046
TasI	AATT	3 cut(s)	55, 314, 702
TatI	WGTACW	1 cut(s)	953
TauI	GCSGC	3 cut(s)	505, 558, 1132
TfiI	GAWTC	5 cut(s)	35, 258, 649, 807, 1003
Tru1I	TTAA	3 cut(s)	270, 786, 827
Tru9I	TTAA	3 cut(s)	270, 786, 827
TscAI	CASTG	4 cut(s)	237, 392, 577, 1042
TseI	GCWGC	2 cut(s)	933, 965
TspDTI	ATGAA	7 cut(s)	152, 442, 896, 920, 956, 1016, 1080
TspRI	CASTG	4 cut(s)	237, 392, 577, 1042
Tth111I	GACNNNGTC	1 cut(s)	677
Van91I	CCANNNNNTGG	1 cut(s)	178
VpaK11BI	GGWCC	3 cut(s)	442, 679, 757
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	991
XmiI	GTMKAC	1 cut(s)	860
XmnI	GAANNNNTTC	1 cut(s)	154
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.