Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Reverse (-)

14256243 .. 14257965

Gene Structure 1723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTATCAAATCTTCTTTTTCTTTCTTCCTCTCCTCCACAGTTATGCCTCTGCCCAGACTCCTCCTCCGTTCAGAAACGGTGACCTCGTCGCAAATTTTGAGCCGAGTTTAGCCGTCGTCACCGGAGTTCTCGCCATCATGTTCGCACTCACTTTCGTCCTCCTCGTCTACGCTAAGTGCTGCCACATCGATCTCCGATCAGGTTCCGGCGACAGAAGAAGGCACGATCGCCGGCTCAGACAAGGAATATTCTTTAACCGGTCAACGGCATCATCGGATCGATTCTCTGGTTTAGACAAAACAGCAATCGAGTCTCTTCCTCTGTTTAGATTCTCTGCTTTGAAAGGATCAAAACAAGGTCTTGATTGTTCTGTCTGTTTGTCTAAATTCGAAAGTGTTGAGATTCTTAGATTGTTGCCTAAGTGTAGACACGCTTTCCACATCGGATGTATCGATCAGTGGCTTGAGCAACACGCAACTTGTCCTCTTTGCAGAGATAGAGTCTCAATGGAAGAAGATTCCTCTGTTCTCACTAACGGAAACAGTTTCAGGTTCTTGAATCAGTCTGAGATTAGAGAAGATTCGAGCTTGGAGCTTTACATCGAGAGAGAAGAAGAAGAAGAAAGAATACACAGAGAAGAACTTAGTGGGTCGTCGAGATTCAGCATCGGAGAGAGTTTCCGGAAGATTCTGAAATTAGGTAATAAAGAAAAAACGTTACTTGATGAACACGTGAACGATAAAGATGAGAAGAAGCTTATGCACAAGTTCAATCATAGGATCGTTGTGTCGGATGTTGTTTTCAAGAATCGTTGGAGCAACGTGAGTTCATCAGATTTGATGTTTTTGAATTCCGAGATGGTTAATTCGATTTCTAGCGAGAGATTTTCTTCATTGGATCATGTGAAGAGAGGAGATGAAGAGGATCAGATAGGTATCTTGCGAATCAAGGAAGAGATGGAAGCGAAGAGAATGTTGGAGAACAAGTTAACTTCGATGACAACTATGTTTTCCTCGGAAAACGGAGACTCTGGTTCGAAATCAAGAAGCGTTATGATCGAACCAGGACGAAGATCGGTGTCTGACATCACTGCGGTTCCTAGACTCAGTATATCGATTCATGGAGATTGCAGCGGTTCAGCCGCAGAGACTGCGTCTGCGTTACAAAACGGTGGGAATGAGACGGAGGAGAGAAGACGGCGTTTGTGGCTGCCGATCGCTAGAAAAACTGCTCAATGGTTTGCTAACAGAGAAAAAAGAAGTCAAATTAACACAACACACCAACACTTTGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

432

Amino Acids

49.37

Weight (kDa)

7.65

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 165	4e-13	Ring finger domain
zf-RING_11	PF17123	122 - 151	6e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	123 - 164	5e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	123 - 164	1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	135 - 165	5.7e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	138 - 170	9.2e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	168, 427
AccIII	TCCGGA	1 cut(s)	681
AciI	CCGC	3 cut(s)	1094, 1134, 1143
AclI	AACGTT	1 cut(s)	716
AclWI	GGATC	5 cut(s)	285, 355, 788, 906, 933
AcsI	RAATTY	3 cut(s)	94, 386, 850
AcvI	CACGTG	1 cut(s)	733
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflIII	ACRYGT	1 cut(s)	730
AgeI	ACCGGT	1 cut(s)	258
AgsI	TTSAA	5 cut(s)	343, 559, 772, 805, 850
AjnI	CCWGG	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	3 cut(s)	588, 595, 757
AluI	AGCT	3 cut(s)	588, 595, 757
Alw26I	GTCTC	5 cut(s)	318, 508, 1020, 1142, 1175
AlwI	GGATC	5 cut(s)	285, 355, 788, 906, 933
AlwNI	CAGNNNCTG	1 cut(s)	1151
Aor13HI	TCCGGA	1 cut(s)	681
ApeKI	GCWGC	3 cut(s)	180, 1131, 1210
ApoI	RAATTY	3 cut(s)	94, 386, 850
AsiGI	ACCGGT	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	92, 112
AsuII	TTCGAA	2 cut(s)	390, 1037
BarI	GAAGNNNNNNTAC	3 cut(s)	28, 612, 644
BbrPI	CACGTG	1 cut(s)	733
BbsI	GAAGAC	1 cut(s)	1201
BbvI	GCAGC	3 cut(s)	167, 1143, 1197
BccI	CCATC	3 cut(s)	143, 853, 952
BceAI	ACGGC	3 cut(s)	98, 282, 1214
BciT130I	CCWGG	1 cut(s)	1065
BcoDI	GTCTC	5 cut(s)	318, 508, 1020, 1142, 1175
BfaI	CTAG	3 cut(s)	876, 1101, 1221
BisI	GCNGC	4 cut(s)	181, 1132, 1143, 1211
BlsI	GCNGC	4 cut(s)	182, 1133, 1144, 1212
Bme1390I	CCNGG	1 cut(s)	1065
BmiI	GGNNCC	2 cut(s)	205, 1098
BmrFI	CCNGG	1 cut(s)	1065
BmsI	GCATC	2 cut(s)	278, 675
BpiI	GAAGAC	1 cut(s)	1201
Bpu14I	TTCGAA	2 cut(s)	390, 1037
BpuEI	CTTGAG	1 cut(s)	485
Bsa29I	ATCGAT	4 cut(s)	189, 280, 453, 1115
BsaAI	YACGTR	1 cut(s)	733
BsaBI	GATNNNNATC	1 cut(s)	935
BsaJI	CCNNGG	1 cut(s)	1014
BsaWI	WCCGGW	3 cut(s)	122, 258, 681
BsaXI	ACNNNNNCTCC	4 cut(s)	49, 79, 971, 1001
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse118I	RCCGGY	2 cut(s)	231, 258
Bse8I	GATNNNNATC	1 cut(s)	935
BseAI	TCCGGA	1 cut(s)	681
BseBI	CCWGG	1 cut(s)	1065
BseCI	ATCGAT	4 cut(s)	189, 280, 453, 1115
BseDI	CCNNGG	1 cut(s)	1014
BseGI	GGATG	2 cut(s)	452, 799
BseJI	GATNNNNATC	1 cut(s)	935
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	3 cut(s)	250, 558, 1120
BseRI	GAGGAG	6 cut(s)	23, 51, 54, 152, 927, 1202
BseXI	GCAGC	3 cut(s)	167, 1143, 1197
Bsh1285I	CGRYCG	2 cut(s)	229, 1218
BshTI	ACCGGT	1 cut(s)	258
BshVI	ATCGAT	4 cut(s)	189, 280, 453, 1115
BsiEI	CGRYCG	2 cut(s)	229, 1218
BsiSI	CCGG	5 cut(s)	123, 207, 232, 259, 682
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	5 cut(s)	318, 508, 1020, 1142, 1175
BsmBI	CGTCTC	1 cut(s)	1175
Bsp119I	TTCGAA	2 cut(s)	390, 1037
Bsp13I	TCCGGA	1 cut(s)	681
BspACI	CCGC	3 cut(s)	1094, 1134, 1143
BspCNI	CTCAG	3 cut(s)	249, 559, 1119
BspDI	ATCGAT	4 cut(s)	189, 280, 453, 1115
BspEI	TCCGGA	1 cut(s)	681
BspLI	GGNNCC	2 cut(s)	205, 1098
BspPI	GGATC	5 cut(s)	285, 355, 788, 906, 933
BspT104I	TTCGAA	2 cut(s)	390, 1037
BsrFI	RCCGGY	2 cut(s)	231, 258
BssAI	RCCGGY	2 cut(s)	231, 258
BssECI	CCNNGG	1 cut(s)	1014
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	4 cut(s)	41, 80, 545, 1172
Bst6I	CTCTTC	5 cut(s)	321, 902, 915, 948, 962
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstBAI	YACGTR	1 cut(s)	733
BstBI	TTCGAA	2 cut(s)	390, 1037
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	7 cut(s)	174, 236, 407, 420, 567, 644, 1106
BstEII	GGTNACC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	452, 799
BstMAI	GTCTC	5 cut(s)	318, 508, 1020, 1142, 1175
BstMCI	CGRYCG	2 cut(s)	229, 1218
BstMWI	GCNNNNNNNGC	2 cut(s)	1151, 1207
BstNI	CCWGG	1 cut(s)	1065
BstPI	GGTNACC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	1063
BstV1I	GCAGC	3 cut(s)	167, 1143, 1197
BstV2I	GAAGAC	1 cut(s)	1201
Bsu15I	ATCGAT	4 cut(s)	189, 280, 453, 1115
BsuTUI	ATCGAT	4 cut(s)	189, 280, 453, 1115
BtsCI	GGATG	2 cut(s)	452, 799
BtsI	GCAGTG	1 cut(s)	1089
BtsIMutI	CAGTG	2 cut(s)	464, 1089
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	1151
Cfr10I	RCCGGY	2 cut(s)	231, 258
ClaI	ATCGAT	4 cut(s)	189, 280, 453, 1115
CseI	GACGC	1 cut(s)	1143
CspAI	ACCGGT	1 cut(s)	258
CviAII	CATG	3 cut(s)	139, 902, 1121
CviJI	RGCY	9 cut(s)	103, 113, 235, 463, 588, 595, 757, 1142, 1210
CviKI_1	RGCY	9 cut(s)	103, 113, 235, 463, 588, 595, 757, 1142, 1210
DdeI	CTNAG	7 cut(s)	174, 236, 407, 420, 567, 644, 1106
Eam1104I	CTCTTC	5 cut(s)	321, 902, 915, 948, 962
EarI	CTCTTC	5 cut(s)	321, 902, 915, 948, 962
Eco72I	CACGTG	1 cut(s)	733
Eco91I	GGTNACC	1 cut(s)	80
EcoO65I	GGTNACC	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	850
EcoRII	CCWGG	1 cut(s)	1063
Esp3I	CGTCTC	1 cut(s)	1175
FaeI	CATG	3 cut(s)	142, 905, 1124
FaiI	YATR	9 cut(s)	45, 140, 761, 777, 903, 1007, 1055, 1112, 1122
FatI	CATG	3 cut(s)	138, 901, 1120
FblI	GTMKAC	2 cut(s)	168, 427
Fnu4HI	GCNGC	4 cut(s)	181, 1132, 1143, 1211
FokI	GGATG	2 cut(s)	459, 806
Fsp4HI	GCNGC	4 cut(s)	181, 1132, 1143, 1211
FspBI	CTAG	3 cut(s)	876, 1101, 1221
GluI	GCNGC	4 cut(s)	181, 1132, 1143, 1211
HapII	CCGG	5 cut(s)	123, 207, 232, 259, 682
HgaI	GACGC	1 cut(s)	1143
Hin1II	CATG	3 cut(s)	142, 905, 1124
HincII	GTYRAC	2 cut(s)	264, 990
HindII	GTYRAC	2 cut(s)	264, 990
HindIII	AAGCTT	1 cut(s)	755
HpaI	GTTAAC	1 cut(s)	990
HpaII	CCGG	5 cut(s)	123, 207, 232, 259, 682
HphI	GGTGA	2 cut(s)	92, 112
Hpy166II	GTNNAC	5 cut(s)	169, 264, 428, 736, 990
Hpy188III	TCNNGA	7 cut(s)	362, 556, 604, 657, 682, 805, 1044
Hpy8I	GTNNAC	5 cut(s)	169, 264, 428, 736, 990
Hpy99I	CGWCG	3 cut(s)	92, 119, 658
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	4 cut(s)	41, 80, 545, 1172
HpyCH4IV	ACGT	3 cut(s)	716, 732, 822
HpyCH4V	TGCA	3 cut(s)	492, 763, 1131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1151, 1207
HpyF3I	CTNAG	7 cut(s)	174, 236, 407, 420, 567, 644, 1106
HpySE526I	ACGT	3 cut(s)	716, 732, 822
Hsp92II	CATG	3 cut(s)	142, 905, 1124
Kpn2I	TCCGGA	1 cut(s)	681
KroI	GCCGGC	1 cut(s)	231
KroNI	GCCGGC	1 cut(s)	233
KspAI	GTTAAC	1 cut(s)	990
LmnI	GCTCC	2 cut(s)	592, 816
Lsp1109I	GCAGC	3 cut(s)	167, 1143, 1197
LweI	GCATC	2 cut(s)	278, 675
MaeI	CTAG	3 cut(s)	876, 1101, 1221
MaeII	ACGT	3 cut(s)	716, 732, 822
MaeIII	GTNAC	4 cut(s)	80, 118, 717, 1161
MluCI	AATT	6 cut(s)	94, 386, 695, 850, 865, 1266
MlyI	GAGTC	5 cut(s)	52, 320, 510, 1022, 1098
MmeI	TCCRAC	3 cut(s)	771, 794, 957
MroI	TCCGGA	1 cut(s)	681
MroNI	GCCGGC	1 cut(s)	231
MseI	TTAA	4 cut(s)	255, 864, 989, 1269
MslI	CAYNNNNRTG	2 cut(s)	42, 1290
MspA1I	CMGCKG	1 cut(s)	1134
MspI	CCGG	5 cut(s)	123, 207, 232, 259, 682
MspR9I	CCNGG	1 cut(s)	1065
MvaI	CCWGG	1 cut(s)	1065
MwoI	GCNNNNNNNGC	2 cut(s)	1151, 1207
NaeI	GCCGGC	1 cut(s)	233
NgoMIV	GCCGGC	1 cut(s)	231
NlaIII	CATG	3 cut(s)	142, 905, 1124
NlaIV	GGNNCC	2 cut(s)	205, 1098
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	2 cut(s)	80, 118
NspV	TTCGAA	2 cut(s)	390, 1037
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 162, 450
PdiI	GCCGGC	1 cut(s)	233
PflFI	GACNNNGTC	2 cut(s)	86, 1153
PinAI	ACCGGT	1 cut(s)	258
PkrI	GCNGC	4 cut(s)	182, 1133, 1144, 1212
Ple19I	CGATCG	2 cut(s)	229, 1218
PleI	GAGTC	5 cut(s)	52, 319, 509, 1022, 1098
PmaCI	CACGTG	1 cut(s)	733
PmlI	CACGTG	1 cut(s)	733
PpsI	GAGTC	5 cut(s)	52, 319, 509, 1022, 1098
Ppu21I	YACGTR	1 cut(s)	733
Psp1406I	AACGTT	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	1063
PspCI	CACGTG	1 cut(s)	733
PspEI	GGTNACC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	2 cut(s)	205, 1098
PstNI	CAGNNNCTG	1 cut(s)	1151
PsyI	GACNNNGTC	2 cut(s)	86, 1153
PvuI	CGATCG	2 cut(s)	229, 1218
RseI	CAYNNNNRTG	2 cut(s)	42, 1290
SaqAI	TTAA	4 cut(s)	255, 864, 989, 1269
SatI	GCNGC	4 cut(s)	181, 1132, 1143, 1211
SchI	GAGTC	5 cut(s)	52, 320, 510, 1022, 1098
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	2 cut(s)	278, 675
SfuI	TTCGAA	2 cut(s)	390, 1037
SmiMI	CAYNNNNRTG	2 cut(s)	42, 1290
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	6 cut(s)	94, 386, 695, 850, 865, 1266
SsiI	CCGC	3 cut(s)	1094, 1134, 1143
SspI	AATATT	1 cut(s)	249
SspMI	CTAG	3 cut(s)	876, 1101, 1221
StyD4I	CCNGG	1 cut(s)	1063
TaaI	ACNGT	4 cut(s)	41, 80, 545, 1172
TaiI	ACGT	3 cut(s)	719, 735, 825
TasI	AATT	6 cut(s)	94, 386, 695, 850, 865, 1266
TauI	GCSGC	1 cut(s)	1145
Tru1I	TTAA	4 cut(s)	255, 864, 989, 1269
Tru9I	TTAA	4 cut(s)	255, 864, 989, 1269
TscAI	CASTG	2 cut(s)	464, 1096
TseFI	GTSAC	2 cut(s)	80, 118
TseI	GCWGC	3 cut(s)	180, 1131, 1210
Tsp45I	GTSAC	2 cut(s)	80, 118
TspDTI	ATGAA	5 cut(s)	741, 819, 882, 933, 1109
TspGWI	ACGGA	4 cut(s)	57, 552, 1038, 1199
TspRI	CASTG	2 cut(s)	464, 1096
Tth111I	GACNNNGTC	2 cut(s)	86, 1153
XapI	RAATTY	3 cut(s)	94, 386, 850
XmiI	GTMKAC	2 cut(s)	168, 427
XspI	CTAG	3 cut(s)	876, 1101, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.