Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Reverse (-)

15212572 .. 15213879

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1192900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGATTAAAATTTCGGGGTTTCAAAATCTCGACCTTCCAATGTTTCATTCAAGCCTGTTTATTTTGCTTCTCAACTGTGTAATCTTCCATGTTGAATCACAATCCTTAGGCTCAGATATGGATTCTGATGAAGAAACTAAATATCAACGAAGTGTTCGTACGGTTATCGGTGTTCTATCTGTCATGTTTGCGTTCCTTTTTACACTCCTAGTTTATGCCAAATACTGCCATAGAAGAGTTCCTGTTCAAGAACACAGTCCCCTGGAAACAGGACTTATCAGTAGAAGCTCCCGGTTTTCGGGGATTGACAAGACGGTGATTGAGGCACTTCCGTTTTTCAGATTCTCTTCTCTCAAAGGGTCAAGGGAAGGTCTCGAATGCGCAGTCTGCCTATCGAAATTTGAAGATATTGAGATTCTCAGATTGCTTCCAAAATGCAAACATGCTTTTCACATCAACTGCATTGATCACTGGCTGGAAAAGCACTCAAGCTGTCCTCTCTGCCGGCACAAGGTTAGCTCTGAGGATCTTACGTTCGTCACCTTCTCGAATAGCATGAGGGTCTTGTCGAATAACCAAGCAGAGCATCGACAGGACTCTAACATAGATCTCTTTGTTCAGAGAGAGGAAGATCGCTGCGGTTCTTCGAGATTCAGCATCGGAAGCAGCTTTCGAAAAAGCAAAAAGGTGGTTGAGAAGGAAGCTGAACTGCTAATAGCAGAAGCTGCTTGTAGTGATGTGACAAAAGAGGATGACAAAATCCTGCACAAGCACAAGCACAAAATTCTTTTTTCTGCTTTCGAGTTCAACAACAGATGGAGCAATCTGAGTTCGTCTGATCTTATGTTCTTGAATTCGGAAATGCTCAACACGGTGTCAAGCAATAGATTCTCTCCCATAAAACTAAACGATGAGCAGTTTTTGACCGCGAAAGCAACTGGAAATGAGGAGATCATGAACATCAGGGAGGAGATGGAGATGAAAAGATTGTTTGAGAACAAAGTTAGTACAATGAACAAAAACAGTTCAGCTACAAACTCAATTGTTCCCTCTACATCAGACAGTATAGCAACTTCAGCTCATGCCTCGAGTTCTACGAATCGAGGAGAGAAAAGATCAATGTCCGAAATCACTGCTCTTTCTAGATTCGGAAACTTGGGTTTCACCAACGGGACTAGAGAGCCTTCTCTGCTCGAAAACAACCCGAAAGAGGATAGGATGAGGCGGCTTTGGATGCCGATTGCCAGAAGAACAGTCCAGTCGTTTGCCAATAGAGAGAAAAGGTCTCCACAGCATTTAGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

436

Amino Acids

49.66

Weight (kDa)

8.46

Isoelectric Point (pI)

62.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	126 - 169	1.5e-12	Ring finger domain
zf-RING_11	PF17123	126 - 155	3.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	126 - 168	5.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	127 - 168	4.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	130 - 169	3.7e-08	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	142 - 172	6.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	382
AccII	CGCG	1 cut(s)	929
AciI	CCGC	3 cut(s)	639, 927, 1225
AclWI	GGATC	1 cut(s)	534
AcsI	RAATTY	4 cut(s)	9, 398, 783, 853
AcuI	CTGAAG	1 cut(s)	1059
AfaI	GTAC	2 cut(s)	160, 1009
AfiI	CCNNNNNNNGG	3 cut(s)	298, 511, 1210
AgsI	TTSAA	7 cut(s)	23, 51, 95, 248, 404, 808, 853
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AloI	GAACNNNNNNTCC	2 cut(s)	518, 550
AluBI	AGCT	8 cut(s)	288, 492, 519, 669, 704, 725, 1031, 1079
AluI	AGCT	8 cut(s)	288, 492, 519, 669, 704, 725, 1031, 1079
Alw26I	GTCTC	2 cut(s)	377, 1290
AlwI	GGATC	1 cut(s)	534
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	1087
ApeKI	GCWGC	3 cut(s)	636, 666, 725
ApoI	RAATTY	4 cut(s)	9, 398, 783, 853
ArsI	GACNNNNNNTTYG	2 cut(s)	369, 401
AspLEI	GCGC	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	328, 532, 1156
AsuII	TTCGAA	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	1087
AxyI	CCTNAGG	1 cut(s)	106
BarI	GAAGNNNNNNTAC	4 cut(s)	142, 174, 1057, 1089
BbvI	GCAGC	3 cut(s)	623, 678, 712
BccI	CCATC	2 cut(s)	810, 967
BcgI	CGANNNNNNTGC	2 cut(s)	1115, 1149
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	377, 1290
BfaI	CTAG	3 cut(s)	209, 1143, 1176
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	4 cut(s)	637, 667, 726, 1226
BlsI	GCNGC	4 cut(s)	638, 668, 727, 1227
Bme1390I	CCNGG	2 cut(s)	263, 292
BmeT110I	CYCGRG	1 cut(s)	1087
BmrFI	CCNGG	2 cut(s)	263, 292
BmsI	GCATC	3 cut(s)	595, 666, 1224
Bpu14I	TTCGAA	1 cut(s)	673
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	292
BsaI	GGTCTC	2 cut(s)	377, 1290
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 511, 1210
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	3 cut(s)	476, 943, 1258
Bse21I	CCTNAGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	3 cut(s)	757, 1224, 1239
BseLI	CCNNNNNNNGG	3 cut(s)	298, 511, 1210
BseMII	CTCAG	4 cut(s)	126, 433, 513, 818
BseNI	ACTGG	3 cut(s)	476, 943, 1258
BseRI	GAGGAG	3 cut(s)	962, 983, 1119
BseXI	GCAGC	3 cut(s)	623, 678, 712
BsgI	GTGCAG	1 cut(s)	749
Bsh1236I	CGCG	1 cut(s)	929
BsiHKCI	CYCGRG	1 cut(s)	1087
BsiSI	CCGG	2 cut(s)	292, 505
BsiWI	CGTACG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	243, 1186
BslI	CCNNNNNNNGG	3 cut(s)	298, 511, 1210
BsmAI	GTCTC	2 cut(s)	377, 1290
BsmFI	GGGAC	2 cut(s)	243, 1186
BsmI	GAATGC	1 cut(s)	383
Bso31I	GGTCTC	2 cut(s)	377, 1290
BsoBI	CYCGRG	1 cut(s)	1087
Bsp119I	TTCGAA	1 cut(s)	673
Bsp143I	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
BspACI	CCGC	3 cut(s)	639, 927, 1225
BspCNI	CTCAG	4 cut(s)	125, 432, 514, 819
BspFNI	CGCG	1 cut(s)	929
BspHI	TCATGA	1 cut(s)	954
BspPI	GGATC	1 cut(s)	534
BspT104I	TTCGAA	1 cut(s)	673
BspTNI	GGTCTC	2 cut(s)	377, 1290
BsrFI	RCCGGY	1 cut(s)	504
BsrI	ACTGG	3 cut(s)	476, 943, 1258
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	8 cut(s)	77, 163, 257, 316, 874, 1025, 1064, 1255
Bst6I	CTCTTC	2 cut(s)	229, 352
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstBI	TTCGAA	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	5 cut(s)	106, 112, 419, 522, 827
BstF5I	GGATG	3 cut(s)	757, 1224, 1239
BstFNI	CGCG	1 cut(s)	929
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	7 cut(s)	469, 529, 610, 634, 841, 954, 1118
BstMAI	GTCTC	2 cut(s)	377, 1290
BstMBI	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
BstMWI	GCNNNNNNNGC	7 cut(s)	387, 481, 663, 725, 1076, 1189, 1234
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	261, 290
BstUI	CGCG	1 cut(s)	929
BstV1I	GCAGC	3 cut(s)	623, 678, 712
BstX2I	RGATCY	2 cut(s)	526, 607
BstYI	RGATCY	2 cut(s)	526, 607
Bsu36I	CCTNAGG	1 cut(s)	106
BtsCI	GGATG	3 cut(s)	757, 1224, 1239
BtsI	GCAGTG	1 cut(s)	1131
BtsIMutI	CAGTG	2 cut(s)	469, 1131
Cac8I	GCNNGC	1 cut(s)	506
CaiI	CAGNNNCTG	1 cut(s)	725
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	504
Csp6I	GTAC	2 cut(s)	159, 1008
CviAII	CATG	6 cut(s)	89, 184, 443, 556, 955, 1082
CviQI	GTAC	2 cut(s)	159, 1008
DdeI	CTNAG	5 cut(s)	106, 112, 419, 522, 827
DpnI	GATC	7 cut(s)	468, 528, 609, 633, 840, 953, 1117
DpnII	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
Eam1104I	CTCTTC	2 cut(s)	229, 352
EarI	CTCTTC	2 cut(s)	229, 352
Eco31I	GGTCTC	2 cut(s)	377, 1290
Eco57I	CTGAAG	1 cut(s)	1059
Eco81I	CCTNAGG	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	1087
EcoRI	GAATTC	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	261
FaeI	CATG	6 cut(s)	92, 187, 446, 559, 958, 1085
FaqI	GGGAC	2 cut(s)	243, 1186
FatI	CATG	6 cut(s)	88, 183, 442, 555, 954, 1081
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	4 cut(s)	637, 667, 726, 1226
FokI	GGATG	3 cut(s)	764, 1231, 1246
Fsp4HI	GCNGC	4 cut(s)	637, 667, 726, 1226
FspBI	CTAG	3 cut(s)	209, 1143, 1176
FspI	TGCGCA	1 cut(s)	382
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	4 cut(s)	637, 667, 726, 1226
HapII	CCGG	2 cut(s)	292, 505
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	6 cut(s)	92, 187, 446, 559, 958, 1085
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	9 cut(s)	95, 122, 342, 415, 596, 651, 888, 1099, 1146
HpaII	CCGG	2 cut(s)	292, 505
HphI	GGTGA	3 cut(s)	328, 532, 1156
Hpy188III	TCNNGA	8 cut(s)	29, 248, 374, 547, 648, 850, 955, 1143
HpyAV	CCTTC	5 cut(s)	44, 362, 553, 691, 1194
HpyCH4III	ACNGT	8 cut(s)	77, 163, 257, 316, 874, 1025, 1064, 1255
HpyCH4IV	ACGT	1 cut(s)	533
HpyCH4V	TGCA	3 cut(s)	438, 462, 766
HpyF10VI	GCNNNNNNNGC	7 cut(s)	387, 481, 663, 725, 1076, 1189, 1234
HpyF3I	CTNAG	5 cut(s)	106, 112, 419, 522, 827
HpySE526I	ACGT	1 cut(s)	533
Hsp92II	CATG	6 cut(s)	92, 187, 446, 559, 958, 1085
HspAI	GCGC	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	504
KroNI	GCCGGC	1 cut(s)	506
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
LmnI	GCTCC	2 cut(s)	293, 819
Lsp1109I	GCAGC	3 cut(s)	623, 678, 712
LweI	GCATC	3 cut(s)	595, 666, 1224
MaeI	CTAG	3 cut(s)	209, 1143, 1176
MaeII	ACGT	1 cut(s)	533
MaeIII	GTNAC	2 cut(s)	538, 739
MalI	GATC	7 cut(s)	468, 528, 609, 633, 840, 953, 1117
MboI	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
MboII	GAAGA	8 cut(s)	76, 143, 246, 339, 416, 636, 641, 1260
MfeI	CAATTG	1 cut(s)	1041
MflI	RGATCY	2 cut(s)	526, 607
MluCI	AATT	5 cut(s)	9, 398, 783, 853, 1041
MlyI	GAGTC	1 cut(s)	590
MroNI	GCCGGC	1 cut(s)	504
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	1299
MspI	CCGG	2 cut(s)	292, 505
MspR9I	CCNGG	2 cut(s)	263, 292
MunI	CAATTG	1 cut(s)	1041
Mva1269I	GAATGC	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	263
MvnI	CGCG	1 cut(s)	929
MwoI	GCNNNNNNNGC	7 cut(s)	387, 481, 663, 725, 1076, 1189, 1234
NaeI	GCCGGC	1 cut(s)	506
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
NgoMIV	GCCGGC	1 cut(s)	504
NlaIII	CATG	6 cut(s)	92, 187, 446, 559, 958, 1085
NmuCI	GTSAC	2 cut(s)	538, 739
NsbI	TGCGCA	1 cut(s)	382
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	1087
PagI	TCATGA	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	2 cut(s)	154, 1094
PctI	GAATGC	1 cut(s)	383
PdiI	GCCGGC	1 cut(s)	506
PfeI	GAWTC	8 cut(s)	95, 122, 342, 415, 651, 888, 1099, 1146
Pfl23II	CGTACG	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	638, 668, 727, 1227
PleI	GAGTC	1 cut(s)	590
PpsI	GAGTC	1 cut(s)	590
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspLI	CGTACG	1 cut(s)	158
PspXI	VCTCGAGB	1 cut(s)	1087
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	2 cut(s)	526, 607
RsaI	GTAC	2 cut(s)	160, 1009
RsaNI	GTAC	2 cut(s)	159, 1008
RseI	CAYNNNNRTG	1 cut(s)	1299
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	4 cut(s)	637, 667, 726, 1226
Sau3AI	GATC	7 cut(s)	466, 526, 607, 631, 838, 951, 1115
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	263, 292
SfaNI	GCATC	3 cut(s)	595, 666, 1224
Sfr274I	CTCGAG	1 cut(s)	1087
SfuI	TTCGAA	1 cut(s)	673
SlaI	CTCGAG	1 cut(s)	1087
SmiMI	CAYNNNNRTG	1 cut(s)	1299
SmlI	CTYRAG	2 cut(s)	487, 1087
SmoI	CTYRAG	2 cut(s)	487, 1087
Sse9I	AATT	5 cut(s)	9, 398, 783, 853, 1041
SsiI	CCGC	3 cut(s)	639, 927, 1225
SspMI	CTAG	3 cut(s)	209, 1143, 1176
StyD4I	CCNGG	2 cut(s)	261, 290
TaaI	ACNGT	8 cut(s)	77, 163, 257, 316, 874, 1025, 1064, 1255
TaiI	ACGT	1 cut(s)	536
TasI	AATT	5 cut(s)	9, 398, 783, 853, 1041
TatI	WGTACW	1 cut(s)	1007
TauI	GCSGC	1 cut(s)	1228
TfiI	GAWTC	8 cut(s)	95, 122, 342, 415, 651, 888, 1099, 1146
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	476, 1138
TseFI	GTSAC	2 cut(s)	538, 739
TseI	GCWGC	3 cut(s)	636, 666, 725
Tsp45I	GTSAC	2 cut(s)	538, 739
TspDTI	ATGAA	5 cut(s)	35, 144, 971, 995, 1028
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	476, 1138
XapI	RAATTY	4 cut(s)	9, 398, 783, 853
XbaI	TCTAGA	1 cut(s)	1142
XceI	RCATGY	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	1087
XspI	CTAG	3 cut(s)	209, 1143, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.