Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011073

Physical Location & Seq

Genomic Coordinates Reverse (-)

15214605 .. 15215909

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1193000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTGTATATATAGTTCCTTTTTGCTTCCAAAGATGATTAGAATTTTGGGTCAGTCTCAAAATTTCAAATTTCCAATGTTCCATTCAAGTTTGATTGTTTTTTTGCTTCTGAATTTTGTGGTGTTCCATGTTGAAGCACAATCCAGTGGCCCAGATTATCCTTCCGATGAACAAAGCAATTTTCAACCAAGTGTTGCTGTGGTTATTGGAATTCTATCAATCATGTTTGCACTGACTTTTGTCCTCCTTGTGTATGCAAAACTCTGCCACAGAAGAGCAGGTGTGGTTGGAAACAACAATCTCCAGCCAACAGGACTTATCAGTAGAAGCTCTCGGTTTTCGGGGATTGACAAGACAGTGATTGAGTCACTTCCTTTTTTCAGATTCTATGCACTGAAAGGGTCGAAAGAAGGCCTCGAATGCTCAGTCTGCCTGTCGAAATTCGAAGGTGTTGAAATCCTCAGGCTGCTTCCCAAATGCAAGCATGCTTTTCATATCGGCTGCATTGATCACTGGCTCGAAAAGCACTCGAGCTGTCCTCTCTGCAGGCACAGGGTTAGTGCTGAGGACTTGACTTCCATTACCTACTCAAACAGCATGAGGTGGATTAATCAATCAGAGCGCCGCCAGGACTCGAACATAGAGCTCTTTGTTCAGAGAGAGGAGGATCACCGCAGTTCTTCCAGATTCAGCGTAGGAAGCAGCTTTCGGAAAGTTGACAGGGCGATTGATAAGGAACTGTTGATCCAACAAGCTGCTGATGTGACAGAGGAAGATCAGAAAGTCCTGCACAAGCACAAGCACACAATTGTTGTTTCGGATCTTGAGTTTAAGAGCAGATGGAGCAATTTGAGTTCCTCTGACCTCATGTTCTTGAATTCCGAGATGCTTAACACGATGTCAAGCGATAGATTTTCTTTCAGACATTTAAATTATGAGCGGTTTTCGCCCGTGAAAGCAACAGGAAATGAGGAGATTGTAAAGATTAGGGAGGACAAGGTTGGTACAATGAAGAAAAATAGTTCAGCTTCGGTTCCTTCTGCTTCAGATAGCATAGCAACTTCAGCTCACCCCTCGAGTTCAGTGAATCGAGGAGAGAAAAGATCCATGTCCGAAATCACTGGTCTTTCGAGATTTGGGAATTTGGGTTTTAAGAACAGGACTAGAGAGCCTTCTCTGCTCGAAAACAATGAGGAGGAGGAAAGAAGGAGGCGGCTTTGGTTGCCGATTGCCAGTAGAACAGTCCAGTGGTTTGCCAATAGAGAGAATAGGCCTCCACAGCCTCAACAGCCTTTATATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

435

Amino Acids

49.62

Weight (kDa)

9.2

Isoelectric Point (pI)

68.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	140 - 183	1.4e-12	Ring finger domain
zf-RING_11	PF17123	140 - 169	5.2e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	140 - 182	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	141 - 182	2e-06	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	147 - 187	6.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	153 - 183	6.5e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20030 AT4G28890
fragaria_vesca	FvH4_1g05750
malus_domestica	MD02G1058600.v1.1 MD02G1058700.v1.1 MD15G1192900.v1.1 MD15G1193000.v1.1
prunus_persica	Prupe.7G224300_v2.0.a1
pyrus_communis	pycom02g04750 pycom15g17270 pycom15g17280
rosa_chinensis	RchiOBHm_Chr2g0091391
rosa_laevigata	RLG00000016220
rosa_multiflora	Rmu_ssc0000333.1_g000003
rosa_rugosa	Rorug02G0017400
rosa_samantha	Rh2AG062400 Rh2BG061400 Rh2CG063500 Rh2DG062000
rosa_wichuraiana	Rw2G005780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AccBSI	CCGCTC	1 cut(s)	940
AciI	CCGC	4 cut(s)	625, 673, 940, 1213
AclWI	GGATC	4 cut(s)	675, 739, 828, 1098
AcsI	RAATTY	8 cut(s)	42, 61, 68, 112, 210, 440, 877, 1141
AcuI	CTGAAG	2 cut(s)	1029, 1047
AfaI	GTAC	1 cut(s)	1006
AgsI	TTSAA	6 cut(s)	67, 87, 134, 185, 455, 877
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AloI	GAACNNNNNNTCC	2 cut(s)	729, 761
AluBI	AGCT	7 cut(s)	330, 534, 646, 705, 755, 1028, 1067
AluI	AGCT	7 cut(s)	330, 534, 646, 705, 755, 1028, 1067
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	60
AlwI	GGATC	4 cut(s)	675, 739, 828, 1098
Ama87I	CYCGRG	2 cut(s)	529, 1075
AoxI	GGCC	3 cut(s)	148, 412, 1271
ApeKI	GCWGC	4 cut(s)	466, 501, 702, 755
ApoI	RAATTY	8 cut(s)	42, 61, 68, 112, 210, 440, 877, 1141
ArsI	GACNNNNNNTTYG	2 cut(s)	411, 443
AseI	ATTAAT	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	2 cut(s)	662, 1061
AsuII	TTCGAA	1 cut(s)	444
AvaI	CYCGRG	2 cut(s)	529, 1075
AxyI	CCTNAGG	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	648
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	4 cut(s)	453, 488, 714, 742
BccI	CCATC	1 cut(s)	834
BciT130I	CCWGG	1 cut(s)	629
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	1164
BfmI	CTRYAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	625
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	6 cut(s)	467, 502, 625, 703, 756, 1214
BlsI	GCNGC	6 cut(s)	468, 503, 626, 704, 757, 1215
Bme1390I	CCNGG	1 cut(s)	629
BmeT110I	CYCGRG	2 cut(s)	529, 1075
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	1035
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	1 cut(s)	876
BoxI	GACNNNNGTC	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpmI	CTGGAG	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	845
Bse1I	ACTGG	5 cut(s)	144, 518, 1126, 1233, 1246
Bse21I	CCTNAGG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	629
BseMII	CTCAG	3 cut(s)	438, 475, 555
BseNI	ACTGG	5 cut(s)	144, 518, 1126, 1233, 1246
BseRI	GAGGAG	5 cut(s)	677, 986, 1107, 1208, 1211
BseXI	GCAGC	4 cut(s)	453, 488, 714, 742
BsgI	GTGCAG	1 cut(s)	773
BshFI	GGCC	3 cut(s)	150, 414, 1273
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	2 cut(s)	529, 1075
BsmAI	GTCTC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	425
BsnI	GGCC	3 cut(s)	150, 414, 1273
BsoBI	CYCGRG	2 cut(s)	529, 1075
Bsp119I	TTCGAA	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	648
Bsp143I	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
BspACI	CCGC	4 cut(s)	625, 673, 940, 1213
BspANI	GGCC	3 cut(s)	150, 414, 1273
BspCNI	CTCAG	3 cut(s)	437, 474, 556
BspLI	GGNNCC	1 cut(s)	1035
BspMAI	CTGCAG	1 cut(s)	548
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	4 cut(s)	675, 739, 828, 1098
BspQI	GCTCTTC	1 cut(s)	268
BspT104I	TTCGAA	1 cut(s)	444
BsrBI	CCGCTC	1 cut(s)	940
BsrI	ACTGG	5 cut(s)	144, 518, 1126, 1233, 1246
BssMI	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	3 cut(s)	358, 741, 1243
Bst6I	CTCTTC	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	444
BstC8I	GCNNGC	3 cut(s)	482, 486, 548
BstDEI	CTNAG	3 cut(s)	424, 461, 564
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	6 cut(s)	511, 670, 747, 778, 823, 1106
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	1 cut(s)	488
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	627
BstSFI	CTRYAG	1 cut(s)	544
BstV1I	GCAGC	4 cut(s)	453, 488, 714, 742
BstX2I	RGATCY	2 cut(s)	820, 1103
BstYI	RGATCY	2 cut(s)	820, 1103
Bsu36I	CCTNAGG	1 cut(s)	461
BsuRI	GGCC	3 cut(s)	150, 414, 1273
BtsIMutI	CAGTG	8 cut(s)	151, 230, 363, 392, 511, 1089, 1119, 1253
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	3 cut(s)	482, 486, 548
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	1005
CviAII	CATG	6 cut(s)	128, 223, 485, 598, 868, 1108
CviQI	GTAC	1 cut(s)	1005
DdeI	CTNAG	3 cut(s)	424, 461, 564
DpnI	GATC	6 cut(s)	510, 669, 746, 777, 822, 1105
DpnII	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
DraI	TTTAAA	1 cut(s)	930
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Ecl136II	GAGCTC	1 cut(s)	646
Eco147I	AGGCCT	2 cut(s)	414, 1273
Eco24I	GRGCYC	1 cut(s)	648
Eco53kI	GAGCTC	1 cut(s)	646
Eco57I	CTGAAG	2 cut(s)	1029, 1047
Eco81I	CCTNAGG	1 cut(s)	461
Eco88I	CYCGRG	2 cut(s)	529, 1075
EcoICRI	GAGCTC	1 cut(s)	646
EcoRI	GAATTC	2 cut(s)	210, 877
EcoRII	CCWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	648
FaeI	CATG	6 cut(s)	131, 226, 488, 601, 871, 1111
FatI	CATG	6 cut(s)	127, 222, 484, 597, 867, 1107
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	6 cut(s)	467, 502, 625, 703, 756, 1214
FriOI	GRGCYC	1 cut(s)	648
Fsp4HI	GCNGC	6 cut(s)	467, 502, 625, 703, 756, 1214
FspBI	CTAG	1 cut(s)	1164
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	6 cut(s)	467, 502, 625, 703, 756, 1214
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	3 cut(s)	150, 414, 1273
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	6 cut(s)	131, 226, 488, 601, 871, 1111
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	5 cut(s)	365, 384, 632, 687, 1087
HphI	GGTGA	2 cut(s)	662, 1061
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188III	TCNNGA	4 cut(s)	684, 824, 874, 1131
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	6 cut(s)	171, 404, 440, 1047, 1182, 1200
HpyCH4III	ACNGT	3 cut(s)	358, 741, 1243
HpyCH4V	TGCA	7 cut(s)	230, 257, 392, 480, 504, 546, 790
HpyF3I	CTNAG	3 cut(s)	424, 461, 564
Hsp92II	CATG	6 cut(s)	131, 226, 488, 601, 871, 1111
HspAI	GCGC	1 cut(s)	622
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	843
Lsp1109I	GCAGC	4 cut(s)	453, 488, 714, 742
LweI	GCATC	1 cut(s)	876
MaeI	CTAG	1 cut(s)	1164
MaeIII	GTNAC	2 cut(s)	366, 763
MalI	GATC	6 cut(s)	510, 669, 746, 777, 822, 1105
MbiI	CCGCTC	1 cut(s)	940
MboI	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
MboII	GAAGA	4 cut(s)	285, 672, 785, 1024
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	2 cut(s)	820, 1103
MhlI	GDGCHC	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	374, 626
MmeI	TCCRAC	2 cut(s)	268, 772
MseI	TTAA	5 cut(s)	609, 831, 891, 929, 1152
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	629
NdeII	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
NlaIII	CATG	6 cut(s)	131, 226, 488, 601, 871, 1111
NlaIV	GGNNCC	1 cut(s)	1035
NmuCI	GTSAC	2 cut(s)	366, 763
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	444
PaeI	GCATGC	1 cut(s)	488
PaeR7I	CTCGAG	2 cut(s)	529, 1075
PaqCI	CACCTGC	1 cut(s)	269
PceI	AGGCCT	2 cut(s)	414, 1273
PciSI	GCTCTTC	1 cut(s)	268
PctI	GAATGC	1 cut(s)	425
PfeI	GAWTC	3 cut(s)	384, 687, 1087
PkrI	GCNGC	6 cut(s)	468, 503, 626, 704, 757, 1215
PleI	GAGTC	2 cut(s)	373, 626
PpsI	GAGTC	2 cut(s)	373, 626
PshAI	GACNNNNGTC	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	1 cut(s)	1035
PspPI	GGNCC	1 cut(s)	149
PspXI	VCTCGAGB	2 cut(s)	529, 1075
PsrI	GAACNNNNNNTAC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	820, 1103
RsaI	GTAC	1 cut(s)	1006
RsaNI	GTAC	1 cut(s)	1005
SacI	GAGCTC	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	268
SaqAI	TTAA	5 cut(s)	609, 831, 891, 929, 1152
SatI	GCNGC	6 cut(s)	467, 502, 625, 703, 756, 1214
Sau3AI	GATC	6 cut(s)	508, 667, 744, 775, 820, 1103
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	2 cut(s)	374, 626
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	1 cut(s)	648
SfaNI	GCATC	1 cut(s)	876
SfcI	CTRYAG	1 cut(s)	544
Sfr274I	CTCGAG	2 cut(s)	529, 1075
SfuI	TTCGAA	1 cut(s)	444
SlaI	CTCGAG	2 cut(s)	529, 1075
SmiI	ATTTAAAT	1 cut(s)	930
SmlI	CTYRAG	3 cut(s)	529, 824, 1075
SmoI	CTYRAG	3 cut(s)	529, 824, 1075
SphI	GCATGC	1 cut(s)	488
SseBI	AGGCCT	2 cut(s)	414, 1273
SsiI	CCGC	4 cut(s)	625, 673, 940, 1213
SspMI	CTAG	1 cut(s)	1164
SstI	GAGCTC	1 cut(s)	648
StuI	AGGCCT	2 cut(s)	414, 1273
StyD4I	CCNGG	1 cut(s)	627
SwaI	ATTTAAAT	1 cut(s)	930
TaaI	ACNGT	3 cut(s)	358, 741, 1243
TauI	GCSGC	2 cut(s)	627, 1216
TfiI	GAWTC	3 cut(s)	384, 687, 1087
Tru1I	TTAA	5 cut(s)	609, 831, 891, 929, 1152
Tru9I	TTAA	5 cut(s)	609, 831, 891, 929, 1152
TscAI	CASTG	8 cut(s)	151, 237, 363, 399, 518, 1089, 1126, 1253
TseFI	GTSAC	2 cut(s)	366, 763
TseI	GCWGC	4 cut(s)	466, 501, 702, 755
Tsp45I	GTSAC	2 cut(s)	366, 763
TspDTI	ATGAA	3 cut(s)	183, 482, 1025
TspRI	CASTG	8 cut(s)	151, 237, 363, 399, 518, 1089, 1126, 1253
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	8 cut(s)	42, 61, 68, 112, 210, 440, 877, 1141
XceI	RCATGY	1 cut(s)	488
XhoI	CTCGAG	2 cut(s)	529, 1075
XspI	CTAG	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.