Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Reverse (-)

8965556 .. 8967243

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20825.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAGAGAGAATGTGGGTCGAAGGAGTTGTTCAGCAAAGAGGAGCTACAAGAAATAAGTGGAGTCCATGTGGGAGACGATTACGTCGAGGTCATGTGTGGCTGCACCAGCCACCGTTACGGAGACGCCGTTGCGAGGCTTAAGATATTTTCAGATGGAGAACTTCAAATCACCTGCCAATGCACTCCTGCTTGTCTCGAAGACAAGTTGACGCCTGCTGCCTTCGAGAAGCATTCTGAGAGAGAAACCTCTAGAAACTGGAGGAACAATGTTTGGGTGTTCATTGAAGGAGACAAGGTTCCGCTTTCAAAGACAGTGTTGCTCAGATACTACAACAAAGCATTGAAGAACTCTAACGTATCGAAAGTCATTCATCGGGATGAGTTTGTTGGGTGCAGCACATGCGGGAAGGAGAGGAGGTTCAGATTGAGGAGCAGAGGGGAATGCCGGATGCACCATGATGCAATTGCTGAGCCTAATTGGAAGTGTTGCGATTACCCATACGACAAGATAACATGCGAGGAGGAGGAAGAAAGAGGGAGCAGGAAAGTGTTCAGAGGTTGCACTCGCTCACCGTCCTGCAAAGGCTGCACTTCTTGCGTCTGCTTCGGCTGCAAGCTCTGCCGTTTCTCTGATTGTAACTGCCAGACTTGCCTCGATTTCACCACCAATGCCAAACCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

228

Amino Acids

26.1

Weight (kDa)

7.74

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	19 - 111	1.7e-42	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	125 - 222	9.5e-43	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
AasI	GACNNNNNNGTC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	2 cut(s)	302, 405
AcyI	GRCGYC	2 cut(s)	126, 212
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	167, 287, 309, 346
AloI	GAACNNNNNNTCC	4 cut(s)	282, 314, 404, 436
AluBI	AGCT	2 cut(s)	46, 619
AluI	AGCT	2 cut(s)	46, 619
Alw26I	GTCTC	4 cut(s)	69, 117, 200, 285
ApeKI	GCWGC	5 cut(s)	102, 218, 396, 588, 612
Asp700I	GAANNNNTTC	1 cut(s)	551
AsuHPI	GGTGA	3 cut(s)	163, 564, 655
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	5 cut(s)	89, 205, 408, 575, 599
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	113, 609
BcoDI	GTCTC	4 cut(s)	69, 117, 200, 285
BfaI	CTAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	5 cut(s)	103, 219, 397, 589, 613
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	5 cut(s)	104, 220, 398, 590, 614
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	2 cut(s)	441, 451
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	280
Bpu1102I	GCTNAGC	1 cut(s)	471
BsaHI	GRCGYC	2 cut(s)	126, 212
BsaXI	ACNNNNNCTCC	8 cut(s)	54, 84, 114, 144, 282, 312, 404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	263
BseGI	GGATG	2 cut(s)	385, 456
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	228, 337, 462
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	5 cut(s)	56, 430, 445, 536, 539
BseXI	GCAGC	5 cut(s)	89, 205, 408, 575, 599
BsgI	GTGCAG	3 cut(s)	88, 415, 574
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	4 cut(s)	69, 117, 200, 285
BsmBI	CGTCTC	2 cut(s)	69, 117
BsmI	GAATGC	2 cut(s)	232, 449
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	2 cut(s)	302, 405
BspCNI	CTCAG	3 cut(s)	229, 336, 463
BspLI	GGNNCC	1 cut(s)	300
BspMI	ACCTGC	1 cut(s)	182
BspTI	CTTAAG	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	263
BssNI	GRCGYC	2 cut(s)	126, 212
Bst4CI	ACNGT	3 cut(s)	116, 316, 576
BstACI	GRCGYC	2 cut(s)	126, 212
BstAFI	CTTAAG	1 cut(s)	140
BstAPI	GCANNNNNTGC	4 cut(s)	402, 588, 597, 621
BstC8I	GCNNGC	2 cut(s)	216, 617
BstDEI	CTNAG	3 cut(s)	237, 323, 471
BstF5I	GGATG	2 cut(s)	385, 456
BstMAI	GTCTC	4 cut(s)	69, 117, 200, 285
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 402, 588, 597, 612, 621, 651
BstNSI	RCATGY	2 cut(s)	405, 519
BstV1I	GCAGC	5 cut(s)	89, 205, 408, 575, 599
BstV2I	GAAGAC	1 cut(s)	207
BtsCI	GGATG	2 cut(s)	385, 456
BtsIMutI	CAGTG	1 cut(s)	321
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	216, 617
CseI	GACGC	3 cut(s)	134, 220, 589
CviAII	CATG	5 cut(s)	68, 94, 402, 458, 516
CviJI	RGCY	8 cut(s)	46, 102, 111, 139, 475, 588, 612, 619
CviKI_1	RGCY	8 cut(s)	46, 102, 111, 139, 475, 588, 612, 619
DdeI	CTNAG	3 cut(s)	237, 323, 471
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Esp3I	CGTCTC	2 cut(s)	69, 117
FaeI	CATG	5 cut(s)	71, 97, 405, 461, 519
FaiI	YATR	6 cut(s)	69, 95, 403, 459, 502, 517
FatI	CATG	5 cut(s)	67, 93, 401, 457, 515
FauI	CCCGC	1 cut(s)	398
Fnu4HI	GCNGC	5 cut(s)	103, 219, 397, 589, 613
FokI	GGATG	2 cut(s)	392, 463
Fsp4HI	GCNGC	5 cut(s)	103, 219, 397, 589, 613
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	5 cut(s)	103, 219, 397, 589, 613
GsuI	CTGGAG	1 cut(s)	280
HapII	CCGG	1 cut(s)	448
HgaI	GACGC	3 cut(s)	134, 220, 589
Hin1I	GRCGYC	2 cut(s)	126, 212
Hin1II	CATG	5 cut(s)	71, 97, 405, 461, 519
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	3 cut(s)	163, 564, 655
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	6 cut(s)	154, 238, 326, 425, 557, 634
Hpy188III	TCNNGA	4 cut(s)	197, 226, 252, 377
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	16, 232, 281, 403
HpyCH4III	ACNGT	3 cut(s)	116, 316, 576
HpyCH4IV	ACGT	2 cut(s)	84, 357
HpyCH4V	TGCA	9 cut(s)	105, 183, 396, 454, 464, 564, 582, 591, 615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 402, 588, 597, 612, 621, 651
HpyF3I	CTNAG	3 cut(s)	237, 323, 471
HpySE526I	ACGT	2 cut(s)	84, 357
Hsp92I	GRCGYC	2 cut(s)	126, 212
Hsp92II	CATG	5 cut(s)	71, 97, 405, 461, 519
LmnI	GCTCC	3 cut(s)	43, 432, 540
LpnPI	CCDG	9 cut(s)	121, 187, 201, 228, 244, 461, 529, 592, 659
Lsp1109I	GCAGC	5 cut(s)	89, 205, 408, 575, 599
LweI	GCATC	2 cut(s)	441, 451
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	84, 357
MaeIII	GTNAC	2 cut(s)	116, 638
MboII	GAAGA	3 cut(s)	212, 358, 542
MfeI	CAATTG	1 cut(s)	465
MluCI	AATT	2 cut(s)	465, 478
MlyI	GAGTC	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	551
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	378, 459
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	448
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	2 cut(s)	232, 449
MwoI	GCNNNNNNNGC	7 cut(s)	108, 402, 588, 597, 612, 621, 651
NlaIII	CATG	5 cut(s)	71, 97, 405, 461, 519
NlaIV	GGNNCC	1 cut(s)	300
NspI	RCATGY	2 cut(s)	405, 519
PaqCI	CACCTGC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 126
PctI	GAATGC	2 cut(s)	232, 449
PdmI	GAANNNNTTC	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	104, 220, 398, 590, 614
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	300
RseI	CAYNNNNRTG	2 cut(s)	378, 459
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	5 cut(s)	103, 219, 397, 589, 613
SchI	GAGTC	1 cut(s)	72
SfaNI	GCATC	2 cut(s)	441, 451
SmiMI	CAYNNNNRTG	2 cut(s)	378, 459
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	465, 478
SsiI	CCGC	2 cut(s)	302, 405
SspMI	CTAG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	116, 316, 576
TaiI	ACGT	2 cut(s)	87, 360
TaqI	TCGA	6 cut(s)	20, 87, 198, 225, 362, 657
TasI	AATT	2 cut(s)	465, 478
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	321
TseI	GCWGC	5 cut(s)	102, 218, 396, 588, 612
TspDTI	ATGAA	2 cut(s)	271, 362
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	140
XbaI	TCTAGA	1 cut(s)	251
XceI	RCATGY	2 cut(s)	405, 519
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.