Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Reverse (-)

10286013 .. 10289694

Gene Structure 3682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGGGAGAGTGGGGTGGTGATGATGTTTAGCGATGAGGAGCTGAGCGAGATGAGCGGGGTGAAGAGAGGGGTGGACCATATTGAGGTCACGTGCGGCTGTACCAGCCACAGATATGGTGATGCTGTTGGGAGGCTTAGGGTTTTCATGAATGGTGAACTGGAAATCACATGTGAATGCACCCCTGGCTGTCAGGAAGGCACATTGAGTCCCTCATTATTTGAGAAGCATTCTGGAAGAGAGACAGCTAGGAAATGGAAAAATAATGTTTGGGTCATTGTTAATGGGAAGAAGGTTCCATTGTGTAAAACAGTTCTACTCAAATACCACAATGAGGCATCAAAGAATGCTAATGGGTCCCAAAGATCCCAAAATGGACGAGCTTCTCACCGTGATGAATTTGTTTGTTGCACAAGATGCAACAAGGAGCGCAGGTTTCGTCTCCGGACAAAGGAAGAATGCCAAATTCACCATGATGCTGTGGCTGATGTGAATTGGAAATGTGCTGATTTGCCATATGACAAAATAACTTGTGATGACGAGGAAGAAAGAGCAAGTCGTAGGGTATATAGAGGCTGCAGCCGTAAACCAACATGCCAAGGCTGCACTTCTTGTGTATGCTTTGGCTGTGAAATTTGTCGTTTCTCAGATTGCAGCTGCCAAACTTGCACCGACTTCACAAGGAATGCTAGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

232

Amino Acids

26.27

Weight (kDa)

8.17

Isoelectric Point (pI)

49.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	18 - 110	3.2e-43	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	130 - 227	2.5e-44	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	2 cut(s)	57, 96
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	3 cut(s)	398, 465, 633
AcvI	CACGTG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	85, 334, 451
AflIII	ACRYGT	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	4 cut(s)	43, 248, 383, 657
AluI	AGCT	4 cut(s)	43, 248, 383, 657
Alw26I	GTCTC	2 cut(s)	236, 446
AlwI	GGATC	1 cut(s)	360
Aor13HI	TCCGGA	1 cut(s)	444
ApeKI	GCWGC	5 cut(s)	576, 579, 603, 654, 657
ApoI	RAATTY	3 cut(s)	398, 465, 633
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	76, 357
AsuHPI	GGTGA	6 cut(s)	31, 73, 131, 167, 380, 461
AvaII	GGWCC	2 cut(s)	76, 357
BbrPI	CACGTG	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	563, 590, 591, 644, 666
BceAI	ACGGC	1 cut(s)	567
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	236, 446
BfaI	CTAG	2 cut(s)	249, 690
BfmI	CTRYAG	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	6 cut(s)	97, 577, 580, 604, 655, 658
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	6 cut(s)	98, 578, 581, 605, 656, 659
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	76, 357
BmgT120I	GGNCC	2 cut(s)	76, 357
BmiI	GGNNCC	3 cut(s)	297, 358, 359
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	4 cut(s)	112, 347, 407, 466
Bpu10I	CCTNAGC	1 cut(s)	137
Bpu1102I	GCTNAGC	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	184, 598
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 334, 451
Bse1I	ACTGG	1 cut(s)	165
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	184, 598
BseLI	CCNNNNNNNGG	3 cut(s)	85, 334, 451
BseMII	CTCAG	2 cut(s)	35, 660
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	563, 590, 591, 644, 666
BsgI	GTGCAG	1 cut(s)	589
BsiSI	CCGG	1 cut(s)	445
BslFI	GGGAC	2 cut(s)	195, 343
BslI	CCNNNNNNNGG	3 cut(s)	85, 334, 451
BsmAI	GTCTC	2 cut(s)	236, 446
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	2 cut(s)	195, 343
BsmI	GAATGC	5 cut(s)	182, 229, 352, 464, 691
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	365
Bsp1720I	GCTNAGC	1 cut(s)	44
BspACI	CCGC	2 cut(s)	57, 96
BspCNI	CTCAG	2 cut(s)	36, 659
BspEI	TCCGGA	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	297, 358, 359
BspMAI	CTGCAG	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	1 cut(s)	360
BsrBI	CCGCTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	184, 598
BssMI	GATC	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	598
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	313, 392
Bst6I	CTCTTC	2 cut(s)	59, 232
BstAPI	GCANNNNNTGC	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	44, 137, 646
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	1 cut(s)	368
BstMAI	GTCTC	2 cut(s)	236, 446
BstMBI	GATC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	6 cut(s)	54, 105, 186, 417, 603, 666
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	2 cut(s)	174, 597
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	577
BstV1I	GCAGC	5 cut(s)	563, 590, 591, 644, 666
BstX2I	RGATCY	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	365
BtgZI	GCGATG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	423
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	2 cut(s)	76, 357
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	4 cut(s)	148, 171, 473, 594
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	3 cut(s)	44, 137, 646
DpnI	GATC	1 cut(s)	367
DpnII	GATC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	59, 232
EarI	CTCTTC	2 cut(s)	59, 232
Eco130I	CCWWGG	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	76, 357
Eco72I	CACGTG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	4 cut(s)	151, 174, 476, 597
FaqI	GGGAC	2 cut(s)	195, 343
FatI	CATG	4 cut(s)	147, 170, 472, 593
FauI	CCCGC	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	6 cut(s)	97, 577, 580, 604, 655, 658
Fsp4HI	GCNGC	6 cut(s)	97, 577, 580, 604, 655, 658
FspBI	CTAG	2 cut(s)	249, 690
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	6 cut(s)	97, 577, 580, 604, 655, 658
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	4 cut(s)	151, 174, 476, 597
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	6 cut(s)	31, 73, 131, 167, 380, 461
Hpy166II	GTNNAC	3 cut(s)	76, 158, 587
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	4 cut(s)	148, 194, 234, 445
Hpy8I	GTNNAC	3 cut(s)	76, 158, 587
HpyAV	CCTTC	2 cut(s)	191, 286
HpyCH4III	ACNGT	2 cut(s)	313, 392
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	7 cut(s)	180, 411, 420, 579, 606, 654, 669
HpyF10VI	GCNNNNNNNGC	6 cut(s)	54, 105, 186, 417, 603, 666
HpyF3I	CTNAG	3 cut(s)	44, 137, 646
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	4 cut(s)	151, 174, 476, 597
HspAI	GCGC	1 cut(s)	430
KflI	GGGWCCC	1 cut(s)	357
Kpn2I	TCCGGA	1 cut(s)	444
Kzo9I	GATC	1 cut(s)	365
LmnI	GCTCC	2 cut(s)	40, 427
LpnPI	CCDG	8 cut(s)	118, 146, 171, 179, 198, 219, 418, 458
Lsp1109I	GCAGC	5 cut(s)	563, 590, 591, 644, 666
LweI	GCATC	4 cut(s)	112, 347, 407, 466
MaeI	CTAG	2 cut(s)	249, 690
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	1 cut(s)	367
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	1 cut(s)	365
MboII	GAAGA	5 cut(s)	76, 249, 301, 467, 557
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	4 cut(s)	398, 465, 493, 633
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	8 cut(s)	31, 62, 79, 126, 223, 328, 535, 566
MroI	TCCGGA	1 cut(s)	444
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	4 cut(s)	114, 175, 393, 474
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	5 cut(s)	182, 229, 352, 464, 691
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	6 cut(s)	54, 105, 186, 417, 603, 666
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	365
NlaIII	CATG	4 cut(s)	151, 174, 476, 597
NlaIV	GGNNCC	3 cut(s)	297, 358, 359
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	2 cut(s)	174, 597
PagI	TCATGA	1 cut(s)	147
PciI	ACATGT	1 cut(s)	170
PctI	GAATGC	5 cut(s)	182, 229, 352, 464, 691
PkrI	GCNGC	6 cut(s)	98, 578, 581, 605, 656, 659
PleI	GAGTC	1 cut(s)	216
PmaCI	CACGTG	1 cut(s)	93
PmlI	CACGTG	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	216
Ppu21I	YACGTR	1 cut(s)	93
PpuMI	RGGWCCY	1 cut(s)	357
PscI	ACATGT	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	184
PspCI	CACGTG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	3 cut(s)	297, 358, 359
PspPI	GGNCC	2 cut(s)	76, 357
PspPPI	RGGWCCY	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	657
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	4 cut(s)	114, 175, 393, 474
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	6 cut(s)	97, 577, 580, 604, 655, 658
Sau3AI	GATC	1 cut(s)	365
Sau96I	GGNCC	2 cut(s)	76, 357
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	9 cut(s)	45, 90, 95, 250, 297, 385, 437, 659, 697
SfaNI	GCATC	4 cut(s)	112, 347, 407, 466
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	2 cut(s)	76, 357
SmiMI	CAYNNNNRTG	4 cut(s)	114, 175, 393, 474
Sse9I	AATT	4 cut(s)	398, 465, 493, 633
SsiI	CCGC	2 cut(s)	57, 96
SspMI	CTAG	2 cut(s)	249, 690
StyD4I	CCNGG	1 cut(s)	184
StyI	CCWWGG	1 cut(s)	598
TaaI	ACNGT	2 cut(s)	313, 392
TaiI	ACGT	1 cut(s)	95
TasI	AATT	4 cut(s)	398, 465, 493, 633
TauI	GCSGC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	5 cut(s)	576, 579, 603, 654, 657
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	136, 164, 411
VpaK11BI	GGWCC	2 cut(s)	76, 357
XapI	RAATTY	3 cut(s)	398, 465, 633
XceI	RCATGY	2 cut(s)	174, 597
XspI	CTAG	2 cut(s)	249, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.