Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Forward (+)

18114178 .. 18115794

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g16950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTTCACGGACGAAGATATTAAACCAGTCGAGAACTTATATGGACTTGAGCGAGGTCCAAATTATATTGAAGTCGTTTGTGGCTGTACGAGCAAGAAGTACGGCGATTCTGTTGGAAAGCTGAGAATTTCCTCCGCAGGACAGTTTTCGATTACTTGCCAATGTCTATCACCATCTTGCAACGAAGGTACTCACTCTAATCTATCGAATTCCCTGATATGGTATCGGTCCATCGGAGAGGTGCTTGTTTTAAACCTCAAATCTGCATTTCCCACTTCATTTTTAATTTTCGGGGTCTTACAAGAGAGGGGGAAGTTGACACCAGAGGAATTCGAGAAGCATTCTAAAGAAGGGGGACCCAGAAAATGGAAGAGCAACATCTGGGTTACAATGGATGAAGATGGTCAGAAAGTACCACTGTGGAAAACTGGGCTGATGAAATTCTACAGACATGCCTCAAACGAAGGCCAGTTAGGTTCTACCATTCGACGACGATGGAACATTCACAGGGATGAACTGCTGCGCTGCTTCAAGTGCAAGAAAGAACGCAGGTTTCGCCTGCGGACTAAAGAAGAGTGCAGAGCCTTCCATAACGCCTCAAGGAATAGGAGGTGGAAATGTGCTGATCATCCCTATGACAAAATAAAGTGTGGTGATGAGGAAGAGCGTGAAACTCGGAAGAGCTGCAGGAGTTGCCCTCGAGCTTCGGCATGCCAGGGTTGCACTTCGTGCGTGTGTTTAGGGTGTCTCAATTGCCGCTACTCGGACTGCAACTGCCGCACCTGTGTTGATTTCATGCACAACGCCAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

31.23

Weight (kDa)

9.05

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	14 - 65	1.6e-18	ULTRAPETALA1 SAND domain
SAND_ULT1	PF23292	103 - 149	1.9e-13	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	169 - 267	4.9e-40	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	366
AciI	CCGC	4 cut(s)	135, 562, 757, 778
AcsI	RAATTY	4 cut(s)	126, 208, 329, 440
AdeI	CACNNNGTG	1 cut(s)	729
AfaI	GTAC	4 cut(s)	88, 101, 190, 414
AfiI	CCNNNNNNNGG	3 cut(s)	219, 366, 763
AgsI	TTSAA	2 cut(s)	71, 532
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	3 cut(s)	121, 684, 704
AluI	AGCT	3 cut(s)	121, 684, 704
Alw26I	GTCTC	1 cut(s)	752
Ama87I	CYCGRG	1 cut(s)	699
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	3 cut(s)	520, 525, 684
ApoI	RAATTY	4 cut(s)	126, 208, 329, 440
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	3 cut(s)	56, 228, 356
AsuHPI	GGTGA	2 cut(s)	162, 665
AvaI	CYCGRG	1 cut(s)	699
AvaII	GGWCC	3 cut(s)	56, 228, 356
BbvI	GCAGC	3 cut(s)	507, 512, 671
BccI	CCATC	4 cut(s)	181, 239, 395, 489
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	716
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	1 cut(s)	752
BfmI	CTRYAG	2 cut(s)	445, 685
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	5 cut(s)	521, 526, 685, 757, 778
BlsI	GCNGC	5 cut(s)	522, 527, 686, 758, 779
Bme1390I	CCNGG	1 cut(s)	716
Bme18I	GGWCC	3 cut(s)	56, 228, 356
BmeT110I	CYCGRG	1 cut(s)	699
BmgT120I	GGNCC	3 cut(s)	56, 228, 356
BmiI	GGNNCC	2 cut(s)	357, 358
BmrFI	CCNGG	1 cut(s)	716
BmrI	ACTGGG	1 cut(s)	438
BmuI	ACTGGG	1 cut(s)	438
BplI	GAGNNNNNCTC	2 cut(s)	682, 714
BpuEI	CTTGAG	2 cut(s)	68, 583
BsaJI	CCNNGG	1 cut(s)	715
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 366, 763
Bse1I	ACTGG	3 cut(s)	26, 433, 469
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	1 cut(s)	715
BseGI	GGATG	3 cut(s)	400, 517, 628
BseLI	CCNNNNNNNGG	3 cut(s)	219, 366, 763
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	3 cut(s)	26, 433, 469
BseXI	GCAGC	3 cut(s)	507, 512, 671
BsgI	GTGCAG	1 cut(s)	598
BshFI	GGCC	1 cut(s)	468
BsiHKCI	CYCGRG	1 cut(s)	699
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	219, 366, 763
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	468
BsoBI	CYCGRG	1 cut(s)	699
Bsp143I	GATC	1 cut(s)	625
BspACI	CCGC	4 cut(s)	135, 562, 757, 778
BspANI	GGCC	1 cut(s)	468
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	357, 358
BspMAI	CTGCAG	1 cut(s)	689
BspMI	ACCTGC	1 cut(s)	540
BspQI	GCTCTTC	3 cut(s)	365, 657, 674
BsrI	ACTGG	3 cut(s)	26, 433, 469
BssECI	CCNNGG	1 cut(s)	715
BssMI	GATC	1 cut(s)	625
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	2 cut(s)	144, 420
Bst6I	CTCTTC	4 cut(s)	365, 567, 657, 674
BstAPI	GCANNNNNTGC	2 cut(s)	693, 729
BstC8I	GCNNGC	2 cut(s)	560, 712
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	3 cut(s)	400, 517, 628
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	1 cut(s)	625
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 534, 555, 693, 720, 729, 777
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	2 cut(s)	455, 714
BstSCI	CCNGG	1 cut(s)	714
BstSFI	CTRYAG	2 cut(s)	445, 685
BstV1I	GCAGC	3 cut(s)	507, 512, 671
BsuRI	GGCC	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	400, 517, 628
BtsIMutI	CAGTG	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	560, 712
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	3 cut(s)	56, 228, 356
Csp6I	GTAC	4 cut(s)	87, 100, 189, 413
CviAII	CATG	3 cut(s)	452, 711, 796
CviJI	RGCY	7 cut(s)	84, 121, 433, 468, 584, 684, 704
CviKI_1	RGCY	7 cut(s)	84, 121, 433, 468, 584, 684, 704
CviQI	GTAC	4 cut(s)	87, 100, 189, 413
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
DraI	TTTAAA	1 cut(s)	252
DraIII	CACNNNGTG	1 cut(s)	729
Eam1104I	CTCTTC	4 cut(s)	365, 567, 657, 674
EarI	CTCTTC	4 cut(s)	365, 567, 657, 674
Eco47I	GGWCC	3 cut(s)	56, 228, 356
Eco88I	CYCGRG	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRI	GAATTC	2 cut(s)	208, 329
EcoRII	CCWGG	1 cut(s)	714
FaeI	CATG	3 cut(s)	455, 714, 799
FaiI	YATR	9 cut(s)	40, 42, 66, 220, 453, 591, 636, 712, 797
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	451, 710, 795
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	5 cut(s)	521, 526, 685, 757, 778
FokI	GGATG	3 cut(s)	407, 524, 615
Fsp4HI	GCNGC	5 cut(s)	521, 526, 685, 757, 778
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	5 cut(s)	521, 526, 685, 757, 778
HaeIII	GGCC	1 cut(s)	468
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	455, 714, 799
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	2 cut(s)	162, 665
Hpy166II	GTNNAC	2 cut(s)	6, 318
Hpy188I	TCNGA	4 cut(s)	236, 408, 678, 766
Hpy188III	TCNNGA	2 cut(s)	31, 334
Hpy8I	GTNNAC	2 cut(s)	6, 318
Hpy99I	CGWCG	2 cut(s)	492, 495
HpyAV	CCTTC	4 cut(s)	179, 344, 458, 595
HpyCH4III	ACNGT	2 cut(s)	144, 420
HpyCH4V	TGCA	8 cut(s)	180, 266, 537, 579, 687, 723, 771, 799
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 534, 555, 693, 720, 729, 777
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	455, 714, 799
HspAI	GCGC	1 cut(s)	523
KflI	GGGWCCC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	1 cut(s)	625
LguI	GCTCTTC	3 cut(s)	365, 657, 674
Lsp1109I	GCAGC	3 cut(s)	507, 512, 671
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	6 cut(s)	26, 382, 410, 584, 674, 691
MfeI	CAATTG	1 cut(s)	751
MluCI	AATT	7 cut(s)	61, 126, 208, 285, 329, 440, 751
MmeI	TCCRAC	1 cut(s)	94
MseI	TTAA	3 cut(s)	21, 251, 284
MslI	CAYNNNNRTG	2 cut(s)	510, 633
MspR9I	CCNGG	1 cut(s)	716
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	7 cut(s)	90, 534, 555, 693, 720, 729, 777
NdeII	GATC	1 cut(s)	625
NlaIII	CATG	3 cut(s)	455, 714, 799
NlaIV	GGNNCC	2 cut(s)	357, 358
NspI	RCATGY	2 cut(s)	455, 714
PaeI	GCATGC	1 cut(s)	714
PaeR7I	CTCGAG	1 cut(s)	699
PciSI	GCTCTTC	3 cut(s)	365, 657, 674
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	522, 527, 686, 758, 779
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	2 cut(s)	357, 358
PspPI	GGNCC	3 cut(s)	56, 228, 356
PspPPI	RGGWCCY	1 cut(s)	356
PspXI	VCTCGAGB	1 cut(s)	699
PstI	CTGCAG	1 cut(s)	689
RsaI	GTAC	4 cut(s)	88, 101, 190, 414
RsaNI	GTAC	4 cut(s)	87, 100, 189, 413
RseI	CAYNNNNRTG	2 cut(s)	510, 633
SapI	GCTCTTC	3 cut(s)	365, 657, 674
SaqAI	TTAA	3 cut(s)	21, 251, 284
SatI	GCNGC	5 cut(s)	521, 526, 685, 757, 778
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	3 cut(s)	56, 228, 356
ScrFI	CCNGG	1 cut(s)	716
SfcI	CTRYAG	2 cut(s)	445, 685
Sfr274I	CTCGAG	1 cut(s)	699
SinI	GGWCC	3 cut(s)	56, 228, 356
SlaI	CTCGAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	2 cut(s)	510, 633
SmlI	CTYRAG	3 cut(s)	47, 598, 699
SmoI	CTYRAG	3 cut(s)	47, 598, 699
SphI	GCATGC	1 cut(s)	714
Sse9I	AATT	7 cut(s)	61, 126, 208, 285, 329, 440, 751
SsiI	CCGC	4 cut(s)	135, 562, 757, 778
StyD4I	CCNGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	144, 420
TaqI	TCGA	6 cut(s)	30, 149, 206, 333, 487, 700
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	7 cut(s)	61, 126, 208, 285, 329, 440, 751
TauI	GCSGC	2 cut(s)	759, 780
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	3 cut(s)	21, 251, 284
Tru9I	TTAA	3 cut(s)	21, 251, 284
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	3 cut(s)	520, 525, 684
TspDTI	ATGAA	5 cut(s)	267, 411, 452, 528, 784
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	423
Van91I	CCANNNNNTGG	1 cut(s)	366
VpaK11BI	GGWCC	3 cut(s)	56, 228, 356
XapI	RAATTY	4 cut(s)	126, 208, 329, 440
XceI	RCATGY	2 cut(s)	455, 714
XhoI	CTCGAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.