AT4G28190

ultrapetala

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006109
Physical Location & Seq
Forward (+)
13984695 .. 13987510
2816 bp
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UTR
Exon/CDS
Intron
AT4G28190.2

Sequence Viewer

Length: 714 bp
ATGGCGAACAATGAGGGAGAGATGCAATGTGGGTCCATGTTGTTTAAGCAAGAGGAGCTACAAGAGATGAGTGGGGTCAATGTTGGTGGCGATTACGTTGAGGTCATGTGTGGTTGTACCAGTCACCGATACGGCGATGCTGTTGCTAGACTTAGGGTTTTCCCCACCGGTGACCTTGAAATCACCTGCGAATGCACACCTGGTTGCGATGAAGACAAGTTGACACCAGCTGCATTCGAGAAGCATTCTGGAAGAGAAACGGCAAGGAAGTGGAAAAACAATGTGTGGGTTATCATTGGGGGCGAAAAGGTTCCATTGTCAAAGACAGTATTGCTCAAGTACTACAATGAATCATCAAAGAAGTGCAGTAGATCAAACAGATCACAAGGTGCCAAAGTTTGCCATAGAGATGAGTTTGTTGGGTGTAACGATTGTGGTAAAGAGAGGAGGTTCAGGCTGAGGAGCAGAGACGAATGCCGCTTGCACCACAATGCAATGGGTGATCCAAACTGGAAATGCTCAGATTTCCCATACGACAAGATAACATGTGAGGAGGAAGAAGAGAGAGGGAGCAGGAAGGTGTACAGAGGGTGCACACGTTCACCTAGTTGCAAAGGCTGCACTTCCTGCGTCTGTTTTGGCTGCGAGTTATGCCGTTTCTCTGAGTGTACTTGCCAGACTTGTGTCGACTTCACCAGCAATGTCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009909 GO:0009910 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAND

Protein Analysis

237

Amino Acids

26.74

Weight (kDa)

7.35

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAND_ULT1 PF23292 23 - 146 1.6e-36 ULTRAPETALA1 SAND domain
zf_ULT1 PF23293 166 - 263 1.4e-42 ULTRAPETALA1 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 389
AccI GTMKAC 1 cut(s) 687
AciI CCGC 1 cut(s) 478
AclWI GGATC 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 4 cut(s) 118, 341, 584, 670
AflIII ACRYGT 2 cut(s) 545, 596
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 58, 230, 710
AluI AGCT 3 cut(s) 58, 230, 710
Alw21I GWGCWC 1 cut(s) 596
Alw26I GTCTC 1 cut(s) 462
Alw44I GTGCAC 1 cut(s) 592
AlwI GGATC 1 cut(s) 497
ApaLI GTGCAC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 230, 618, 642
AsiGI ACCGGT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 6 cut(s) 116, 175, 182, 512, 594, 685
AvaII GGWCC 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 596
BanI GGYRCC 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 458
BbvI GCAGC 3 cut(s) 217, 605, 629
BceAI ACGGC 3 cut(s) 148, 276, 639
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 2 cut(s) 147, 606
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 4 cut(s) 231, 478, 619, 643
BlsI GCNGC 4 cut(s) 232, 479, 620, 644
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 3 cut(s) 34, 312, 391
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 12, 127
BoxI GACNNNNGTC 1 cut(s) 683
BpiI GAAGAC 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 167
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 120, 515
Bse3DI GCAATG 3 cut(s) 32, 501, 706
BseBI CCWGG 1 cut(s) 201
BseMI GCAATG 3 cut(s) 32, 501, 706
BseMII CTCAG 3 cut(s) 449, 534, 654
BseNI ACTGG 2 cut(s) 120, 515
BseRI GAGGAG 4 cut(s) 68, 460, 475, 566
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 3 cut(s) 217, 605, 629
BsgI GTGCAG 2 cut(s) 385, 604
BshNI GGYRCC 1 cut(s) 389
BshTI ACCGGT 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 596
BsiSI CCGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 462
BsmBI CGTCTC 1 cut(s) 462
BsmI GAATGC 4 cut(s) 197, 233, 244, 479
Bsp1286I GDGCHC 1 cut(s) 596
Bsp1407I TGTACA 1 cut(s) 582
Bsp143I GATC 3 cut(s) 371, 380, 502
BspACI CCGC 1 cut(s) 478
BspCNI CTCAG 3 cut(s) 450, 533, 655
BspLI GGNNCC 3 cut(s) 34, 312, 391
BspMI ACCTGC 1 cut(s) 194
BspPI GGATC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 3 cut(s) 32, 501, 706
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 582
BsrI ACTGG 2 cut(s) 120, 515
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 3 cut(s) 371, 380, 502
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 247, 555
BstAPI GCANNNNNTGC 2 cut(s) 618, 627
BstAUI TGTACA 1 cut(s) 582
BstC8I GCNNGC 1 cut(s) 482
BstDEI CTNAG 4 cut(s) 152, 458, 520, 663
BstEII GGTNACC 1 cut(s) 170
BstKTI GATC 3 cut(s) 374, 383, 505
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 3 cut(s) 371, 380, 502
BstMWI GCNNNNNNNGC 4 cut(s) 55, 618, 627, 651
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 549
BstPAI GACNNNNGTC 1 cut(s) 683
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 596
BstV1I GCAGC 3 cut(s) 217, 605, 629
BstV2I GAAGAC 1 cut(s) 219
BtgZI GCGATG 2 cut(s) 150, 222
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 482
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 33
CseI GACGC 1 cut(s) 619
CsiI ACCWGGT 1 cut(s) 199
Csp6I GTAC 4 cut(s) 117, 340, 583, 669
CspAI ACCGGT 1 cut(s) 167
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 37, 106, 546
CviJI RGCY 6 cut(s) 58, 230, 457, 618, 642, 710
CviKI_1 RGCY 6 cut(s) 58, 230, 457, 618, 642, 710
CviQI GTAC 4 cut(s) 117, 340, 583, 669
DdeI CTNAG 4 cut(s) 152, 458, 520, 663
DpnI GATC 3 cut(s) 373, 382, 504
DpnII GATC 3 cut(s) 371, 380, 502
DraIII CACNNNGTG 1 cut(s) 389
Eam1104I CTCTTC 2 cut(s) 247, 555
EarI CTCTTC 2 cut(s) 247, 555
Eco47I GGWCC 1 cut(s) 33
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 199
Esp3I CGTCTC 1 cut(s) 462
FaeI CATG 3 cut(s) 40, 109, 549
FaiI YATR 6 cut(s) 38, 107, 405, 532, 547, 652
FatI CATG 3 cut(s) 36, 105, 545
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 4 cut(s) 231, 478, 619, 643
Fsp4HI GCNGC 4 cut(s) 231, 478, 619, 643
FspBI CTAG 2 cut(s) 147, 606
GluI GCNGC 4 cut(s) 231, 478, 619, 643
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 619
Hin1II CATG 3 cut(s) 40, 109, 549
HincII GTYRAC 2 cut(s) 222, 688
HindII GTYRAC 2 cut(s) 222, 688
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 1 cut(s) 350
HpaII CCGG 1 cut(s) 168
HphI GGTGA 6 cut(s) 116, 175, 182, 512, 594, 685
Hpy166II GTNNAC 6 cut(s) 222, 583, 594, 602, 669, 688
Hpy188I TCNGA 2 cut(s) 523, 664
Hpy188III TCNNGA 2 cut(s) 238, 249
Hpy8I GTNNAC 6 cut(s) 222, 583, 594, 602, 669, 688
HpyAV CCTTC 1 cut(s) 571
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 96, 598
HpyCH4V TGCA 9 cut(s) 25, 195, 233, 366, 484, 494, 594, 612, 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 618, 627, 651
HpyF3I CTNAG 4 cut(s) 152, 458, 520, 663
HpySE526I ACGT 2 cut(s) 96, 598
Hsp92II CATG 3 cut(s) 40, 109, 549
Kzo9I GATC 3 cut(s) 371, 380, 502
LmnI GCTCC 3 cut(s) 55, 462, 570
Lsp1109I GCAGC 3 cut(s) 217, 605, 629
LweI GCATC 2 cut(s) 12, 127
MabI ACCWGGT 1 cut(s) 199
MaeI CTAG 2 cut(s) 147, 606
MaeII ACGT 2 cut(s) 96, 598
MaeIII GTNAC 3 cut(s) 122, 170, 425
MalI GATC 3 cut(s) 373, 382, 504
MboI GATC 3 cut(s) 371, 380, 502
MboII GAAGA 4 cut(s) 224, 264, 569, 572
MhlI GDGCHC 1 cut(s) 596
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 408, 489
MspA1I CMGCKG 1 cut(s) 230
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 201
Mva1269I GAATGC 4 cut(s) 197, 233, 244, 479
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 4 cut(s) 55, 618, 627, 651
NdeII GATC 3 cut(s) 371, 380, 502
NlaIII CATG 3 cut(s) 40, 109, 549
NlaIV GGNNCC 3 cut(s) 34, 312, 391
NmuCI GTSAC 2 cut(s) 122, 170
NspI RCATGY 1 cut(s) 549
PaqCI CACCTGC 1 cut(s) 194
PciI ACATGT 1 cut(s) 545
PctI GAATGC 4 cut(s) 197, 233, 244, 479
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 350
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 4 cut(s) 232, 479, 620, 644
PscI ACATGT 1 cut(s) 545
PshAI GACNNNNGTC 1 cut(s) 683
Psp6I CCWGG 1 cut(s) 199
PspEI GGTNACC 1 cut(s) 170
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 3 cut(s) 34, 312, 391
PspPI GGNCC 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 4 cut(s) 118, 341, 584, 670
RsaNI GTAC 4 cut(s) 117, 340, 583, 669
RseI CAYNNNNRTG 2 cut(s) 408, 489
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 231, 478, 619, 643
Sau3AI GATC 3 cut(s) 371, 380, 502
Sau96I GGNCC 1 cut(s) 33
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 596
SexAI ACCWGGT 1 cut(s) 199
SfaNI GCATC 2 cut(s) 12, 127
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 408, 489
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SsiI CCGC 1 cut(s) 478
SspMI CTAG 2 cut(s) 147, 606
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 99, 601
TaqI TCGA 2 cut(s) 237, 687
TatI WGTACW 3 cut(s) 339, 582, 668
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 2 cut(s) 122, 170
TseI GCWGC 3 cut(s) 230, 618, 642
Tsp45I GTSAC 2 cut(s) 122, 170
TspDTI ATGAA 2 cut(s) 225, 363
VneI GTGCAC 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 33
XceI RCATGY 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 2 cut(s) 147, 606
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.