Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Forward (+)

30447316 .. 30448809

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1220200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTCACGGACGAAGATATTAAACCAGTCGAGAACTTATATGGACTTGAGCGAGGTCCAAATTATATTGAAGTCGTTTGTGGCTGTACGAGCAAGAAGTACGGCGATTCTGTTGGAAAGCTGAGAATTTCCTCCACAGGACAGTTTTCGATTACTTGCCAATGTCTGTCACCATCTTGCAACGAAGTCGGGGTCTTACAAGAGAGGGGGAAGTTGACACCAGAGGAATTCGAGAAGCATTCTAAAGAAGGGGGACCCAGAAAATGGAAGAGCAACATCTGGGTTACGATGGACGAAGATGGTCAGAAAGTACCACTGTGGAAAACTGGGCTGATGAAATTCTACAGACATGCCTCAAACGAAGGCCAGTTAGGTTCTACCATTCGGCGACGATGGAACATTCACAGGGATGAACTGCTGCGCTGCTTCAAGTGCAAGAAAGAACGCAGGTTTCGCCTGCGGACTAAAGAAGAGTGCAGAGCCTTCCATAACGCCTCAAGGAATAGAAGGTGGAAATGTGCTGATCATCCTTATGACAAAATAAAGTGTGGTGATGAAGAAGAGCGTGAAACTCGGAAGAGCTGCAGGAGTTGCCCTCGAGCTTCGGCTTGCCAGGGTTGCACTTCGTGCGTGTGTTTAGGGTGTCTCAATTGCCGCTACTCGGACTGCAACTGCCGCACCTGTGTTGATTTCATGCACAACGCCAAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

27.45

Weight (kDa)

9.0

Isoelectric Point (pI)

63.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	14 - 115	1.3e-36	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	135 - 233	3.6e-40	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	3 cut(s)	460, 655, 676
AcsI	RAATTY	3 cut(s)	126, 227, 338
AdeI	CACNNNGTG	1 cut(s)	627
AfaI	GTAC	3 cut(s)	88, 101, 312
AfiI	CCNNNNNNNGG	2 cut(s)	264, 661
AgsI	TTSAA	2 cut(s)	71, 430
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	3 cut(s)	121, 582, 602
AluI	AGCT	3 cut(s)	121, 582, 602
Alw26I	GTCTC	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	3 cut(s)	418, 423, 582
ApoI	RAATTY	3 cut(s)	126, 227, 338
ArsI	GACNNNNNNTTYG	2 cut(s)	177, 209
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	56, 254
AsuHPI	GGTGA	2 cut(s)	162, 563
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	2 cut(s)	56, 254
BbvI	GCAGC	3 cut(s)	405, 410, 569
BccI	CCATC	4 cut(s)	181, 283, 293, 387
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	614
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	650
BfmI	CTRYAG	2 cut(s)	343, 583
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	5 cut(s)	419, 424, 583, 655, 676
BlsI	GCNGC	5 cut(s)	420, 425, 584, 656, 677
Bme1390I	CCNGG	1 cut(s)	614
Bme18I	GGWCC	2 cut(s)	56, 254
BmeT110I	CYCGRG	1 cut(s)	597
BmgT120I	GGNCC	2 cut(s)	56, 254
BmiI	GGNNCC	2 cut(s)	255, 256
BmrFI	CCNGG	1 cut(s)	614
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	580, 612
BpuEI	CTTGAG	2 cut(s)	68, 481
BsaJI	CCNNGG	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 661
Bse1I	ACTGG	3 cut(s)	26, 331, 367
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	613
BseGI	GGATG	2 cut(s)	415, 526
BseLI	CCNNNNNNNGG	2 cut(s)	264, 661
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	3 cut(s)	26, 331, 367
BseXI	GCAGC	3 cut(s)	405, 410, 569
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	264, 661
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	597
Bsp143I	GATC	1 cut(s)	523
BspACI	CCGC	3 cut(s)	460, 655, 676
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	255, 256
BspMAI	CTGCAG	1 cut(s)	587
BspMI	ACCTGC	1 cut(s)	438
BspQI	GCTCTTC	3 cut(s)	263, 555, 572
BsrI	ACTGG	3 cut(s)	26, 331, 367
BssECI	CCNNGG	1 cut(s)	613
BssMI	GATC	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	144, 318
Bst6I	CTCTTC	4 cut(s)	263, 465, 555, 572
BstAPI	GCANNNNNTGC	2 cut(s)	591, 627
BstC8I	GCNNGC	2 cut(s)	458, 610
BstDEI	CTNAG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	415, 526
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	1 cut(s)	526
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	1 cut(s)	523
BstMWI	GCNNNNNNNGC	7 cut(s)	90, 432, 453, 591, 618, 627, 675
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	612
BstSFI	CTRYAG	2 cut(s)	343, 583
BstV1I	GCAGC	3 cut(s)	405, 410, 569
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	415, 526
BtsIMutI	CAGTG	1 cut(s)	314
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	458, 610
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	56, 254
Csp6I	GTAC	3 cut(s)	87, 100, 311
CviAII	CATG	2 cut(s)	350, 694
CviJI	RGCY	8 cut(s)	84, 121, 331, 366, 482, 582, 602, 608
CviKI_1	RGCY	8 cut(s)	84, 121, 331, 366, 482, 582, 602, 608
CviQI	GTAC	3 cut(s)	87, 100, 311
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	525
DpnII	GATC	1 cut(s)	523
DraIII	CACNNNGTG	1 cut(s)	627
Eam1104I	CTCTTC	4 cut(s)	263, 465, 555, 572
EarI	CTCTTC	4 cut(s)	263, 465, 555, 572
Eco47I	GGWCC	2 cut(s)	56, 254
Eco88I	CYCGRG	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	2 cut(s)	353, 697
FaiI	YATR	7 cut(s)	40, 42, 66, 351, 489, 534, 695
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	349, 693
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	5 cut(s)	419, 424, 583, 655, 676
FokI	GGATG	2 cut(s)	422, 513
Fsp4HI	GCNGC	5 cut(s)	419, 424, 583, 655, 676
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	5 cut(s)	419, 424, 583, 655, 676
HaeIII	GGCC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	353, 697
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	2 cut(s)	162, 563
Hpy166II	GTNNAC	2 cut(s)	6, 216
Hpy188I	TCNGA	3 cut(s)	306, 576, 664
Hpy188III	TCNNGA	2 cut(s)	31, 232
Hpy8I	GTNNAC	2 cut(s)	6, 216
Hpy99I	CGWCG	1 cut(s)	393
HpyAV	CCTTC	4 cut(s)	242, 356, 493, 501
HpyCH4III	ACNGT	2 cut(s)	144, 318
HpyCH4V	TGCA	7 cut(s)	180, 435, 477, 585, 621, 669, 697
HpyF10VI	GCNNNNNNNGC	7 cut(s)	90, 432, 453, 591, 618, 627, 675
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	353, 697
HspAI	GCGC	1 cut(s)	421
KflI	GGGWCCC	1 cut(s)	254
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	1 cut(s)	523
LguI	GCTCTTC	3 cut(s)	263, 555, 572
Lsp1109I	GCAGC	3 cut(s)	405, 410, 569
MaeIII	GTNAC	2 cut(s)	168, 283
MalI	GATC	1 cut(s)	525
MboI	GATC	1 cut(s)	523
MboII	GAAGA	7 cut(s)	26, 280, 308, 482, 569, 572, 589
MfeI	CAATTG	1 cut(s)	649
MluCI	AATT	5 cut(s)	61, 126, 227, 338, 649
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	47, 142, 198, 217, 364, 505, 606
MseI	TTAA	1 cut(s)	21
MslI	CAYNNNNRTG	2 cut(s)	408, 531
MspR9I	CCNGG	1 cut(s)	614
MunI	CAATTG	1 cut(s)	649
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	7 cut(s)	90, 432, 453, 591, 618, 627, 675
NdeII	GATC	1 cut(s)	523
NlaIII	CATG	2 cut(s)	353, 697
NlaIV	GGNNCC	2 cut(s)	255, 256
NmuCI	GTSAC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	597
PciSI	GCTCTTC	3 cut(s)	263, 555, 572
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	107
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	420, 425, 584, 656, 677
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	1 cut(s)	612
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	255, 256
PspPI	GGNCC	2 cut(s)	56, 254
PspPPI	RGGWCCY	1 cut(s)	254
PspXI	VCTCGAGB	1 cut(s)	597
PstI	CTGCAG	1 cut(s)	587
RsaI	GTAC	3 cut(s)	88, 101, 312
RsaNI	GTAC	3 cut(s)	87, 100, 311
RseI	CAYNNNNRTG	2 cut(s)	408, 531
SapI	GCTCTTC	3 cut(s)	263, 555, 572
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	5 cut(s)	419, 424, 583, 655, 676
Sau3AI	GATC	1 cut(s)	523
Sau96I	GGNCC	2 cut(s)	56, 254
ScrFI	CCNGG	1 cut(s)	614
SetI	ASST	8 cut(s)	58, 123, 376, 452, 512, 584, 604, 683
SfcI	CTRYAG	2 cut(s)	343, 583
Sfr274I	CTCGAG	1 cut(s)	597
SinI	GGWCC	2 cut(s)	56, 254
SlaI	CTCGAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	2 cut(s)	408, 531
SmlI	CTYRAG	3 cut(s)	47, 496, 597
SmoI	CTYRAG	3 cut(s)	47, 496, 597
Sse9I	AATT	5 cut(s)	61, 126, 227, 338, 649
SsiI	CCGC	3 cut(s)	460, 655, 676
StyD4I	CCNGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	144, 318
TaqI	TCGA	4 cut(s)	30, 149, 231, 598
TasI	AATT	5 cut(s)	61, 126, 227, 338, 649
TauI	GCSGC	2 cut(s)	657, 678
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	3 cut(s)	418, 423, 582
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	4 cut(s)	350, 426, 570, 682
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	56, 254
XapI	RAATTY	3 cut(s)	126, 227, 338
XceI	RCATGY	1 cut(s)	353
XhoI	CTCGAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.