Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Forward (+)

22922939 .. 22926616

Gene Structure 3678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G232900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGAATGGAGTAGAGAGGGAAACTGGGTTGCTGCTATTTAGCGATGATGATCTGAGAGAGATGAGTGGGGTCAACAGAGGCTCGGACCATATAGAGGTCACGTGTGGCTGTACCAGCCACAGATATGGTGATGCTGTTGGGAGGCTTAGGGTTTTCGTCAATGGTGACCTGGAAATCACCTGTGAATGCACCCCTGGTTGTCAGGAAGACAAACTGACTCCTGCTGCATTTGAGAAGCATTCTGGAAGAGAGACAGCTAGGAAATGGAAAAATAATGTTTGGGTAATTGATAATGGGAAGAAGGTTCCACTGTGTAAAACAGTGCTGCTCAAATACCACAACGAGGCATCAAAACATGCTAATGCTTCCCACAGATCTAACAATGGACGGGCTTGTCACCGTGATGAGTTTGTTTGCTGTACTAGATGCAACAAGGAGCGCAGGTTTCGTCTCCGGACAAAAGAGGAATGCCGGATTCACCATGATGCTTTAGCTGATGTGAACTGGAAATGTGCTGAGCTGCCATATGACAAAATAACATGTAATGATGAAGAAGAACGAGCAAGTCGAAGAGTATATAGAGGCTGTACCCGTTCTCCAACATGCCAAGGCTGCACTTCTTGTGTGTGCTTTGGCTGTGAAATCTGTCGTTTCTCAGATTGCAGCTGCCAGACTTGCACTGACTTCACAAGGAATGCAAAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

237

Amino Acids

26.81

Weight (kDa)

8.15

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
Acc36I	ACCTGC	1 cut(s)	435
AccIII	TCCGGA	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	3 cut(s)	115, 424, 592
AfiI	CCNNNNNNNGG	2 cut(s)	97, 346
AflIII	ACRYGT	2 cut(s)	104, 542
AjnI	CCWGG	2 cut(s)	171, 196
AluBI	AGCT	4 cut(s)	260, 497, 523, 669
AluI	AGCT	4 cut(s)	260, 497, 523, 669
Alw26I	GTCTC	2 cut(s)	248, 458
Aor13HI	TCCGGA	1 cut(s)	456
ApeKI	GCWGC	7 cut(s)	34, 227, 328, 523, 615, 666, 669
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	5 cut(s)	143, 172, 179, 392, 473
AvaII	GGWCC	1 cut(s)	88
BbrPI	CACGTG	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	7 cut(s)	21, 214, 315, 510, 602, 656, 678
BciT130I	CCWGG	2 cut(s)	173, 198
BcoDI	GTCTC	2 cut(s)	248, 458
BfaI	CTAG	2 cut(s)	261, 426
BfuAI	ACCTGC	1 cut(s)	435
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	7 cut(s)	35, 228, 329, 524, 616, 667, 670
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	7 cut(s)	36, 229, 330, 525, 617, 668, 671
Bme1390I	CCNGG	2 cut(s)	173, 198
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	173, 198
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	4 cut(s)	124, 359, 419, 478
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	149
Bpu1102I	GCTNAGC	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	196, 610
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 346
Bse1I	ACTGG	2 cut(s)	31, 512
Bse8I	GATNNNNATC	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	2 cut(s)	173, 198
BseDI	CCNNGG	2 cut(s)	196, 610
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	2 cut(s)	97, 346
BseMII	CTCAG	3 cut(s)	47, 510, 672
BseNI	ACTGG	2 cut(s)	31, 512
BseXI	GCAGC	7 cut(s)	21, 214, 315, 510, 602, 656, 678
BsgI	GTGCAG	1 cut(s)	601
BsiSI	CCGG	2 cut(s)	457, 475
BslI	CCNNNNNNNGG	2 cut(s)	97, 346
BsmAI	GTCTC	2 cut(s)	248, 458
BsmBI	CGTCTC	1 cut(s)	458
BsmI	GAATGC	4 cut(s)	194, 241, 476, 703
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	52, 377
Bsp1720I	GCTNAGC	1 cut(s)	519
BspCNI	CTCAG	3 cut(s)	48, 511, 671
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	31, 512
BssECI	CCNNGG	2 cut(s)	196, 610
BssMI	GATC	2 cut(s)	52, 377
BssT1I	CCWWGG	1 cut(s)	610
Bst2UI	CCWGG	2 cut(s)	173, 198
Bst4CI	ACNGT	3 cut(s)	315, 325, 404
Bst6I	CTCTTC	2 cut(s)	244, 568
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	4 cut(s)	56, 149, 519, 658
BstEII	GGTNACC	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	2 cut(s)	55, 380
BstMAI	GTCTC	2 cut(s)	248, 458
BstMBI	GATC	2 cut(s)	52, 377
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 615, 678
BstNI	CCWGG	2 cut(s)	173, 198
BstNSI	RCATGY	3 cut(s)	362, 546, 609
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	171, 196
BstV1I	GCAGC	7 cut(s)	21, 214, 315, 510, 602, 656, 678
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	377
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	60
BtsIMutI	CAGTG	3 cut(s)	311, 330, 681
BveI	ACCTGC	1 cut(s)	435
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	114, 423, 591
CviAII	CATG	4 cut(s)	359, 485, 543, 606
CviQI	GTAC	3 cut(s)	114, 423, 591
DdeI	CTNAG	4 cut(s)	56, 149, 519, 658
DpnI	GATC	2 cut(s)	54, 379
DpnII	GATC	2 cut(s)	52, 377
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	244, 568
EarI	CTCTTC	2 cut(s)	244, 568
Eco130I	CCWWGG	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	88
Eco72I	CACGTG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	171, 196
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	4 cut(s)	362, 488, 546, 609
FatI	CATG	4 cut(s)	358, 484, 542, 605
FauNDI	CATATG	1 cut(s)	529
Fnu4HI	GCNGC	7 cut(s)	35, 228, 329, 524, 616, 667, 670
Fsp4HI	GCNGC	7 cut(s)	35, 228, 329, 524, 616, 667, 670
FspBI	CTAG	2 cut(s)	261, 426
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	7 cut(s)	35, 228, 329, 524, 616, 667, 670
HapII	CCGG	2 cut(s)	457, 475
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	362, 488, 546, 609
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HinfI	GANTC	2 cut(s)	220, 478
HpaII	CCGG	2 cut(s)	457, 475
HphI	GGTGA	5 cut(s)	143, 172, 179, 392, 473
Hpy166II	GTNNAC	2 cut(s)	76, 505
Hpy188I	TCNGA	3 cut(s)	57, 88, 661
Hpy188III	TCNNGA	3 cut(s)	206, 246, 457
Hpy8I	GTNNAC	2 cut(s)	76, 505
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	315, 325, 404
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	7 cut(s)	192, 230, 432, 618, 666, 681, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 615, 678
HpyF3I	CTNAG	4 cut(s)	56, 149, 519, 658
HpySE526I	ACGT	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	362, 488, 546, 609
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	52, 377
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	7 cut(s)	21, 214, 315, 510, 602, 656, 678
LweI	GCATC	4 cut(s)	124, 359, 419, 478
MaeI	CTAG	2 cut(s)	261, 426
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	100, 167, 398
MalI	GATC	2 cut(s)	54, 379
MboI	GATC	2 cut(s)	52, 377
MboII	GAAGA	6 cut(s)	221, 261, 313, 566, 569, 585
MflI	RGATCY	1 cut(s)	377
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	7 cut(s)	12, 74, 91, 138, 340, 460, 578
MroI	TCCGGA	1 cut(s)	456
MslI	CAYNNNNRTG	4 cut(s)	126, 363, 405, 486
MspA1I	CMGCKG	1 cut(s)	669
MspI	CCGG	2 cut(s)	457, 475
MspR9I	CCNGG	2 cut(s)	173, 198
Mva1269I	GAATGC	4 cut(s)	194, 241, 476, 703
MvaI	CCWGG	2 cut(s)	173, 198
MwoI	GCNNNNNNNGC	3 cut(s)	117, 615, 678
NdeI	CATATG	1 cut(s)	529
NdeII	GATC	2 cut(s)	52, 377
NlaIII	CATG	4 cut(s)	362, 488, 546, 609
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	100, 167, 398
NspI	RCATGY	3 cut(s)	362, 546, 609
PciI	ACATGT	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	4 cut(s)	194, 241, 476, 703
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	36, 229, 330, 525, 617, 668, 671
PleI	GAGTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	105
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	2 cut(s)	171, 196
PspCI	CACGTG	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	171, 196
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	669
RsaI	GTAC	3 cut(s)	115, 424, 592
RsaNI	GTAC	3 cut(s)	114, 423, 591
RseI	CAYNNNNRTG	4 cut(s)	126, 363, 405, 486
SatI	GCNGC	7 cut(s)	35, 228, 329, 524, 616, 667, 670
Sau3AI	GATC	2 cut(s)	52, 377
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	173, 198
SfaNI	GCATC	4 cut(s)	124, 359, 419, 478
SinI	GGWCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	4 cut(s)	126, 363, 405, 486
Sse9I	AATT	1 cut(s)	288
SspMI	CTAG	2 cut(s)	261, 426
StyD4I	CCNGG	2 cut(s)	171, 196
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	3 cut(s)	315, 325, 404
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	571
TasI	AATT	1 cut(s)	288
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	1 cut(s)	478
TscAI	CASTG	3 cut(s)	318, 330, 688
TseFI	GTSAC	3 cut(s)	100, 167, 398
TseI	GCWGC	7 cut(s)	34, 227, 328, 523, 615, 666, 669
Tsp45I	GTSAC	3 cut(s)	100, 167, 398
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	3 cut(s)	318, 330, 688
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	3 cut(s)	362, 546, 609
XspI	CTAG	2 cut(s)	261, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.