Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Forward (+)

34524094 .. 34527605

Gene Structure 3512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGGGAGGTGGTGATGTTTAGCGAGGAGGAGCTGAGGGAGATGAGCGGAGTGAAGAGAGGGGTGGACCATATTGAGGTCACGTGCGGCTGTACCAGTCACAGATATGGAGATGCTGTTGGGAGGCTTAGGGTTTTCATGAATGGTGAACTTGAAATCACATGTGAATGCACCCCTGGCTGTCAGGAAGGCACATTGAGTCCCTCACTATTTGAGAAGCATTCTGGAAGAGAGACAGCTAGGAAATGGAAAAATAATGTTTGGGTCATTGTTAATGGGAAGAAGGTTCCATTGTGTAAGACAGTGCTACTCAAGTACCACAACGAGGCATCAAAGAATGCTAATGCGGCCCAAAGATCCCAGAATGGACGAGCTTCTCACCGTGATGAGTTTGTTTGTTGTACTAGATGCAACAAGGAGCGCAGGTTTCGTCTCCGAACAAAAGAGGAATGCCAGGTTCACCATGATGCTGTGGCTGATGTGAATTGGAAATGTGCTGATCTGCCATATGACAAAATAACTTGTGATGATGAGGAAGAAAGAGCAAGTCGTAGGGTTTATAGAGGCTGCAGCCGTAAACCAACATGCCAAGGCTGCACTTCTTGTGTATGTTTTGGCTGTGAAATTTGTCGTTTCTCAGATTGCAGCTGCCAAACTTGCACCGACTTCACCAGAAATGCTAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

230

Amino Acids

26.03

Weight (kDa)

8.31

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	15 - 107	3.1e-43	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	127 - 224	4e-44	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	414
AccBSI	CCGCTC	1 cut(s)	48
AciI	CCGC	3 cut(s)	48, 87, 347
AclWI	GGATC	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	624
AcvI	CACGTG	1 cut(s)	84
AfaI	GTAC	3 cut(s)	94, 317, 403
AfiI	CCNNNNNNNGG	2 cut(s)	76, 325
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	175, 453
AluBI	AGCT	4 cut(s)	34, 239, 374, 648
AluI	AGCT	4 cut(s)	34, 239, 374, 648
Alw26I	GTCTC	2 cut(s)	227, 437
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	5 cut(s)	567, 570, 594, 645, 648
ApoI	RAATTY	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	67, 349
AsuHPI	GGTGA	5 cut(s)	25, 158, 371, 452, 661
AvaII	GGWCC	1 cut(s)	67
BaeI	ACNNNNGTAYC	2 cut(s)	299, 332
BbrPI	CACGTG	1 cut(s)	84
BbvCI	CCTCAGC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	554, 581, 582, 635, 657
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	2 cut(s)	177, 455
BcoDI	GTCTC	2 cut(s)	227, 437
BfaI	CTAG	2 cut(s)	240, 405
BfmI	CTRYAG	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	414
BisI	GCNGC	7 cut(s)	88, 348, 568, 571, 595, 646, 649
BlsI	GCNGC	7 cut(s)	89, 349, 569, 572, 596, 647, 650
Bme1390I	CCNGG	2 cut(s)	177, 455
Bme18I	GGWCC	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	67, 349
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	177, 455
BmsI	GCATC	4 cut(s)	103, 338, 398, 457
Bpu10I	CCTNAGC	2 cut(s)	35, 128
BpuEI	CTTGAG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	175, 589
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 410, 440
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 325
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	2 cut(s)	177, 455
BseDI	CCNNGG	2 cut(s)	175, 589
BseLI	CCNNNNNNNGG	2 cut(s)	76, 325
BseMII	CTCAG	2 cut(s)	26, 651
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	41, 44
BseXI	GCAGC	5 cut(s)	554, 581, 582, 635, 657
BsgI	GTGCAG	1 cut(s)	580
BshFI	GGCC	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	76, 325
BsmAI	GTCTC	2 cut(s)	227, 437
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	4 cut(s)	173, 220, 343, 455
BsnI	GGCC	1 cut(s)	350
Bsp143I	GATC	2 cut(s)	356, 499
BspACI	CCGC	3 cut(s)	48, 87, 347
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	2 cut(s)	27, 650
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	572
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	351
BsrBI	CCGCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	175, 589
BssMI	GATC	2 cut(s)	356, 499
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	2 cut(s)	177, 455
Bst4CI	ACNGT	2 cut(s)	304, 383
Bst6I	CTCTTC	2 cut(s)	50, 223
BstBAI	YACGTR	1 cut(s)	84
BstDEI	CTNAG	3 cut(s)	35, 128, 637
BstHHI	GCGC	1 cut(s)	423
BstKTI	GATC	2 cut(s)	359, 502
BstMAI	GTCTC	2 cut(s)	227, 437
BstMBI	GATC	2 cut(s)	356, 499
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 347, 594, 657
BstNI	CCWGG	2 cut(s)	177, 455
BstNSI	RCATGY	2 cut(s)	165, 588
BstSCI	CCNGG	2 cut(s)	175, 453
BstSFI	CTRYAG	1 cut(s)	568
BstV1I	GCAGC	5 cut(s)	554, 581, 582, 635, 657
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	414
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	67, 349
Csp6I	GTAC	3 cut(s)	93, 316, 402
CviAII	CATG	4 cut(s)	139, 162, 464, 585
CviQI	GTAC	3 cut(s)	93, 316, 402
DdeI	CTNAG	3 cut(s)	35, 128, 637
DpnI	GATC	2 cut(s)	358, 501
DpnII	GATC	2 cut(s)	356, 499
Eam1104I	CTCTTC	2 cut(s)	50, 223
EarI	CTCTTC	2 cut(s)	50, 223
Eco130I	CCWWGG	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	67
Eco72I	CACGTG	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	175, 453
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	4 cut(s)	142, 165, 467, 588
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	4 cut(s)	138, 161, 463, 584
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	7 cut(s)	88, 348, 568, 571, 595, 646, 649
Fsp4HI	GCNGC	7 cut(s)	88, 348, 568, 571, 595, 646, 649
FspBI	CTAG	2 cut(s)	240, 405
GlaI	GCGC	1 cut(s)	422
GluI	GCNGC	7 cut(s)	88, 348, 568, 571, 595, 646, 649
HaeIII	GGCC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	423
Hin1II	CATG	4 cut(s)	142, 165, 467, 588
Hin6I	GCGC	1 cut(s)	421
HinP1I	GCGC	1 cut(s)	421
HinfI	GANTC	1 cut(s)	199
HphI	GGTGA	5 cut(s)	25, 158, 371, 452, 661
Hpy166II	GTNNAC	4 cut(s)	67, 149, 460, 578
Hpy188I	TCNGA	2 cut(s)	437, 640
Hpy188III	TCNNGA	3 cut(s)	139, 185, 225
Hpy8I	GTNNAC	4 cut(s)	67, 149, 460, 578
HpyAV	CCTTC	2 cut(s)	182, 277
HpyCH4III	ACNGT	2 cut(s)	304, 383
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	6 cut(s)	171, 411, 570, 597, 645, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 347, 594, 657
HpyF3I	CTNAG	3 cut(s)	35, 128, 637
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	142, 165, 467, 588
HspAI	GCGC	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	356, 499
LmnI	GCTCC	2 cut(s)	31, 418
Lsp1109I	GCAGC	5 cut(s)	554, 581, 582, 635, 657
LweI	GCATC	4 cut(s)	103, 338, 398, 457
MaeI	CTAG	2 cut(s)	240, 405
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	79, 98
MalI	GATC	2 cut(s)	358, 501
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	2 cut(s)	356, 499
MboII	GAAGA	4 cut(s)	67, 240, 292, 548
MflI	RGATCY	1 cut(s)	356
MluCI	AATT	2 cut(s)	484, 624
MlyI	GAGTC	1 cut(s)	208
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	4 cut(s)	105, 166, 384, 465
MspA1I	CMGCKG	1 cut(s)	648
MspR9I	CCNGG	2 cut(s)	177, 455
Mva1269I	GAATGC	4 cut(s)	173, 220, 343, 455
MvaI	CCWGG	2 cut(s)	177, 455
MwoI	GCNNNNNNNGC	4 cut(s)	177, 347, 594, 657
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	2 cut(s)	356, 499
NlaIII	CATG	4 cut(s)	142, 165, 467, 588
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	79, 98
NspI	RCATGY	2 cut(s)	165, 588
PagI	TCATGA	1 cut(s)	138
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	4 cut(s)	173, 220, 343, 455
PkrI	GCNGC	7 cut(s)	89, 349, 569, 572, 596, 647, 650
PleI	GAGTC	1 cut(s)	207
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	207
Ppu21I	YACGTR	1 cut(s)	84
PscI	ACATGT	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	175, 453
PspCI	CACGTG	1 cut(s)	84
PspGI	CCWGG	2 cut(s)	175, 453
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	67, 349
PstI	CTGCAG	1 cut(s)	572
PsuI	RGATCY	1 cut(s)	356
PvuII	CAGCTG	1 cut(s)	648
RsaI	GTAC	3 cut(s)	94, 317, 403
RsaNI	GTAC	3 cut(s)	93, 316, 402
RseI	CAYNNNNRTG	4 cut(s)	105, 166, 384, 465
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	7 cut(s)	88, 348, 568, 571, 595, 646, 649
Sau3AI	GATC	2 cut(s)	356, 499
Sau96I	GGNCC	2 cut(s)	67, 349
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	177, 455
SfaNI	GCATC	4 cut(s)	103, 338, 398, 457
SfcI	CTRYAG	1 cut(s)	568
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	4 cut(s)	105, 166, 384, 465
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	484, 624
SsiI	CCGC	3 cut(s)	48, 87, 347
SspMI	CTAG	2 cut(s)	240, 405
StyD4I	CCNGG	2 cut(s)	175, 453
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	304, 383
TaiI	ACGT	1 cut(s)	86
TasI	AATT	2 cut(s)	484, 624
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	2 cut(s)	90, 350
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	79, 98
TseI	GCWGC	5 cut(s)	567, 570, 594, 645, 648
Tsp45I	GTSAC	2 cut(s)	79, 98
TspDTI	ATGAA	2 cut(s)	127, 155
TspRI	CASTG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	624
XceI	RCATGY	2 cut(s)	165, 588
XspI	CTAG	2 cut(s)	240, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.