Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Reverse (-)

6730076 .. 6733683

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1092100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCGAATGGTGTAGAGAGAGAAAGTGGGTTGGTGCTGTTTAGCGACGATGAGCTGAGAGAGATGAGCGGGGTGAATAGAGGGTCGGACCATATAGAGGTCACGTGCGGCTGCACCAGCCACAGATACGGTGATGCAGTCGGGAGGCTTAGGGTTTTCGTTAATGGTGACCTCGAAATCACCTGCGAGTGCACCCCTGGCTGTCAGGAAGGAAAACTGACTCCTGCCGCATTTGAGAAACATTCTGGAAGAGAGACAGCTAGAAAATGGAAAAATAATGTTTGGATAATTGATAATGGAAAGAAGGTTCCGCTGTGTAAAACAGTGCTGCTCAAGTACCATAATGAGGCATCAAAAAGTGCTAATGGTTCCCACAGGTCCAACAATGGACGTGTTTGTCACCACGATGAGTTTGTTTCCTGCACTAGATGCAACAAGGAGCGCAGGTTTCGCCTCCGGACAAAAGAGGAGTGTCGGGTTCACCATGACGCTTTGGCTGATGTGAATTGGAAATGTGCTGATCTGCCGTATGACAAGATAACTTGTGATGATGAAGAAGAACGAGCAAGTCGAAGGGTATACAGAGGCTGCACCCGTTCTCCGACATGCCAAGGCTGTACTTCTTGTGTGTGCTTTGGGTGCGATATCTGTCGTTTCTCGGATTGCGGCTGCCAGACTTGCACCGACTTCACAAGGAATGCTAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0009909 GO:0009910 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAND

Protein Analysis

237

Amino Acids

26.61

Weight (kDa)

8.0

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	22 - 114	4.6e-44	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	134 - 231	1.2e-44	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	191
AasI	GACNNNNNNGTC	1 cut(s)	396
Acc36I	ACCTGC	2 cut(s)	191, 435
AccBSI	CCGCTC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	579
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	5 cut(s)	69, 108, 228, 311, 666
AcvI	CACGTG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	338, 619
AfiI	CCNNNNNNNGG	2 cut(s)	97, 346
AflIII	ACRYGT	1 cut(s)	391
AjiI	CACGTC	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	196
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	2 cut(s)	55, 260
AluI	AGCT	2 cut(s)	55, 260
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	588
Aor13HI	TCCGGA	1 cut(s)	456
ApaLI	GTGCAC	1 cut(s)	190
ApeKI	GCWGC	4 cut(s)	111, 328, 588, 669
AspLEI	GCGC	1 cut(s)	444
AspS9I	GGNCC	2 cut(s)	88, 378
AsuHPI	GGTGA	6 cut(s)	85, 143, 172, 179, 392, 473
AvaII	GGWCC	2 cut(s)	88, 378
BaeGI	GKGCMC	1 cut(s)	194
BbrPI	CACGTG	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	98, 315, 575, 656
BceAI	ACGGC	1 cut(s)	511
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	2 cut(s)	261, 426
BfuAI	ACCTGC	2 cut(s)	191, 435
BisI	GCNGC	7 cut(s)	109, 112, 228, 329, 589, 667, 670
BlsI	GCNGC	7 cut(s)	110, 113, 229, 330, 590, 668, 671
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	2 cut(s)	88, 378
BmgBI	CACGTC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	88, 378
BmiI	GGNNCC	2 cut(s)	309, 370
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	124, 359, 419
Bpu10I	CCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	317
BsaAI	YACGTR	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	196, 610
BsaWI	WCCGGW	1 cut(s)	456
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 461, 583, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 346
BseAI	TCCGGA	1 cut(s)	456
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	196, 610
BseLI	CCNNNNNNNGG	2 cut(s)	97, 346
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	4 cut(s)	98, 315, 575, 656
BsgI	GTGCAG	3 cut(s)	97, 406, 574
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	97, 346
BsmAI	GTCTC	1 cut(s)	248
BsmI	GAATGC	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	1 cut(s)	520
BspACI	CCGC	5 cut(s)	69, 108, 228, 311, 666
BspCNI	CTCAG	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	309, 370
BspMI	ACCTGC	2 cut(s)	191, 435
BsrBI	CCGCTC	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	196, 610
BssMI	GATC	1 cut(s)	520
BssNAI	GTATAC	1 cut(s)	580
BssT1I	CCWWGG	1 cut(s)	610
Bst1107I	GTATAC	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	131, 325
Bst6I	CTCTTC	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	56, 149
BstEII	GGTNACC	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 198, 429, 450, 639, 678
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	98, 315, 575, 656
BstZ17I	GTATAC	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	392
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	2 cut(s)	191, 435
CaiI	CAGNNNCTG	1 cut(s)	588
CfoI	GCGC	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	88, 378
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	337, 618
CviAII	CATG	2 cut(s)	485, 606
CviQI	GTAC	2 cut(s)	337, 618
DdeI	CTNAG	2 cut(s)	56, 149
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	610
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	2 cut(s)	88, 378
Eco72I	CACGTG	1 cut(s)	105
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	2 cut(s)	488, 609
FaiI	YATR	7 cut(s)	93, 95, 342, 486, 531, 580, 607
FatI	CATG	2 cut(s)	484, 605
FauI	CCCGC	1 cut(s)	62
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	7 cut(s)	109, 112, 228, 329, 589, 667, 670
Fsp4HI	GCNGC	7 cut(s)	109, 112, 228, 329, 589, 667, 670
FspBI	CTAG	2 cut(s)	261, 426
GlaI	GCGC	1 cut(s)	443
GluI	GCNGC	7 cut(s)	109, 112, 228, 329, 589, 667, 670
HapII	CCGG	1 cut(s)	457
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	488, 609
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	6 cut(s)	85, 143, 172, 179, 392, 473
Hpy166II	GTNNAC	3 cut(s)	192, 481, 580
Hpy188I	TCNGA	3 cut(s)	88, 603, 661
Hpy188III	TCNNGA	4 cut(s)	142, 206, 246, 457
Hpy8I	GTNNAC	3 cut(s)	192, 481, 580
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	203, 298, 567
HpyCH4III	ACNGT	2 cut(s)	131, 325
HpyCH4IV	ACGT	2 cut(s)	104, 391
HpyCH4V	TGCA	7 cut(s)	114, 137, 192, 423, 432, 591, 681
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 198, 429, 450, 639, 678
HpyF3I	CTNAG	2 cut(s)	56, 149
HpySE526I	ACGT	2 cut(s)	104, 391
Hsp92II	CATG	2 cut(s)	488, 609
HspAI	GCGC	1 cut(s)	442
Kpn2I	TCCGGA	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	520
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	4 cut(s)	98, 315, 575, 656
LweI	GCATC	3 cut(s)	124, 359, 419
MaeI	CTAG	2 cut(s)	261, 426
MaeII	ACGT	2 cut(s)	104, 391
MaeIII	GTNAC	3 cut(s)	100, 167, 398
MalI	GATC	1 cut(s)	522
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	1 cut(s)	520
MboII	GAAGA	3 cut(s)	261, 566, 569
MhlI	GDGCHC	1 cut(s)	194
MluCI	AATT	2 cut(s)	288, 505
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	3 cut(s)	66, 405, 626
MnlI	CCTC	8 cut(s)	74, 91, 138, 182, 340, 460, 464, 578
MroI	TCCGGA	1 cut(s)	456
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	405
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	6 cut(s)	117, 198, 429, 450, 639, 678
NdeII	GATC	1 cut(s)	520
NlaIII	CATG	2 cut(s)	488, 609
NlaIV	GGNNCC	2 cut(s)	309, 370
NmuCI	GTSAC	3 cut(s)	100, 167, 398
NspI	RCATGY	1 cut(s)	609
PaqCI	CACCTGC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	568
PctI	GAATGC	1 cut(s)	703
PkrI	GCNGC	7 cut(s)	110, 113, 229, 330, 590, 668, 671
PleI	GAGTC	1 cut(s)	214
PmaCI	CACGTG	1 cut(s)	105
PmlI	CACGTG	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	214
Ppu21I	YACGTR	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	196
PspCI	CACGTG	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	309, 370
PspPI	GGNCC	2 cut(s)	88, 378
PstNI	CAGNNNCTG	1 cut(s)	588
RsaI	GTAC	2 cut(s)	338, 619
RsaNI	GTAC	2 cut(s)	337, 618
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	7 cut(s)	109, 112, 228, 329, 589, 667, 670
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	2 cut(s)	88, 378
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	194
SfaNI	GCATC	3 cut(s)	124, 359, 419
SinI	GGWCC	2 cut(s)	88, 378
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	288, 505
SsiI	CCGC	5 cut(s)	69, 108, 228, 311, 666
SspMI	CTAG	2 cut(s)	261, 426
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	2 cut(s)	131, 325
TaiI	ACGT	2 cut(s)	107, 394
TaqI	TCGA	2 cut(s)	174, 571
TasI	AATT	2 cut(s)	288, 505
TatI	WGTACW	1 cut(s)	617
TauI	GCSGC	3 cut(s)	111, 230, 669
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	330
TseFI	GTSAC	3 cut(s)	100, 167, 398
TseI	GCWGC	4 cut(s)	111, 328, 588, 669
Tsp45I	GTSAC	3 cut(s)	100, 167, 398
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	330
VneI	GTGCAC	1 cut(s)	190
VpaK11BI	GGWCC	2 cut(s)	88, 378
XceI	RCATGY	1 cut(s)	609
XmiI	GTMKAC	1 cut(s)	579
XspI	CTAG	2 cut(s)	261, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.