Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006109

Physical Location & Seq

Genomic Coordinates Forward (+)

33499338 .. 33502333

Gene Structure 2996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G023690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATTGCATACCAAATGAGTCGGACAATACTTACATTGAGCTCATCATCAGCTTCAAGGAGAAGGATTGTAGCTCAAAATAATGACGTCATTCATATGCGAAGACCAGTACAAACCTTGTTTGCAGAAGAAGAGTTGAATCTGCTCCAGACTATAGACGAATTCAACCAAGGTGAAAATTTCGTCAAAGTCTTGTGCGGTTGCACCGACCCAAAATATGGTGACACTGTTGGAAAGCTTATGATTTCCTCGACTGGTGGAGTGAGAAGATGGAAGGGCAACATATGGGTTAACAAGGAAGACAAAAAAGTCTCTCTTCAGAAATCAGGCTTGTTGAGATATTACAAGCATGCTGCGAATGAAAGCCGTTGGGACCATCGCAGATCAAATTTCGTCCATCGGGATGAATTCCTTCGCTGCAGTGAGTGTCAGAAAGAGCGACGGTTTCGTCTGCACACAATGGATGAGTGCAGAGCTTTCCACAACACTTCGACAAACATAAATTGGAGATGTGCTGACCACTATGACAACTATAAGAGCTACCCTCGTACCCCAGCATGCAAGGGATGCACCTCTTGTGTGTGTTTGAGTTGCAGCATGTGCCGCTTCAAGAACTGTGATTGCCGAACTTGTGGCGACTACATTCAAAATGTGGAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

25.68

Weight (kDa)

9.01

Isoelectric Point (pI)

69.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAND_ULT1	PF23292	52 - 87	8.9e-09	ULTRAPETALA1 SAND domain
SAND_ULT1	PF23292	86 - 115	5.1e-06	ULTRAPETALA1 SAND domain
zf_ULT1	PF23293	133 - 174	1.6e-12	ULTRAPETALA1 zinc finger domain
zf_ULT1	PF23293	178 - 216	2.2e-09	ULTRAPETALA1 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20825 AT4G28190 AT4G28190
fragaria_vesca	FvH4_6g44900
malus_domestica	MD03G1220200.v1.1 MD09G1092100.v1.1 MD17G1082000.v1.1
prunus_persica	Prupe.3G232900_v2.0.a1 Prupe.4G188700_v2.0.a1
pyrus_communis	pycom03g16950 pycom17g08020
rosa_chinensis	RchiOBHm_Chr2g0162081 RchiOBHm_Chr5g0035151
rosa_laevigata	RLG00000021321 RLG00000033602
rosa_multiflora	Rmu_sc0004020.1_g000038 Rmu_sc0006558.1_g000019
rosa_roxburghii	Rroxscaffold_2G00088320
rosa_rugosa	Rorug02G0494500
rosa_samantha	Rh2AG560700 Rh2BG574000 Rh2CG544300 Rh2DG584000 Rh5DG267000
rosa_wichuraiana	Rw2G046440 Rw5G023690 Rw5G023980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	308, 447
AatII	GACGTC	1 cut(s)	90
AccB7I	CCANNNNNTGG	1 cut(s)	218
AciI	CCGC	2 cut(s)	198, 604
AcsI	RAATTY	4 cut(s)	161, 178, 388, 407
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	2 cut(s)	111, 550
AfiI	CCNNNNNNNGG	1 cut(s)	218
AgsI	TTSAA	5 cut(s)	57, 139, 166, 610, 647
AluBI	AGCT	6 cut(s)	42, 53, 74, 238, 476, 540
AluI	AGCT	6 cut(s)	42, 53, 74, 238, 476, 540
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	353, 417, 594
ApoI	RAATTY	4 cut(s)	161, 178, 388, 407
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	185, 233
AvaII	GGWCC	1 cut(s)	373
BaeI	ACNNNNGTAYC	2 cut(s)	532, 565
BanII	GRGCYC	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	109, 306
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	340, 404, 606
BccI	CCATC	3 cut(s)	264, 384, 405
BceAI	ACGGC	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	316
BfmI	CTRYAG	2 cut(s)	153, 418
BisI	GCNGC	4 cut(s)	354, 418, 595, 604
BlsI	GCNGC	4 cut(s)	355, 419, 596, 605
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	374
BmsI	GCATC	1 cut(s)	557
BpiI	GAAGAC	2 cut(s)	109, 306
BplI	GAGNNNNNCTC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	218
Bse1I	ACTGG	2 cut(s)	107, 259
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	3 cut(s)	409, 469, 572
BseLI	CCNNNNNNNGG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	107, 259
BseXI	GCAGC	3 cut(s)	340, 404, 606
BseYI	CCCAGC	1 cut(s)	553
BsgI	GTGCAG	2 cut(s)	437, 490
BsiHKAI	GWGCWC	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	383
BspACI	CCGC	2 cut(s)	198, 604
BspLI	GGNNCC	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	107, 259
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	1 cut(s)	383
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	229, 444, 617
Bst6I	CTCTTC	2 cut(s)	126, 321
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	2 cut(s)	567, 600
BstC8I	GCNNGC	2 cut(s)	351, 559
BstF5I	GGATG	3 cut(s)	409, 469, 572
BstKTI	GATC	1 cut(s)	386
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	3 cut(s)	567, 600, 603
BstNSI	RCATGY	3 cut(s)	353, 561, 601
BstSFI	CTRYAG	2 cut(s)	153, 418
BstV1I	GCAGC	3 cut(s)	340, 404, 606
BstV2I	GAAGAC	2 cut(s)	109, 306
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	409, 469, 572
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	2 cut(s)	225, 427
Cac8I	GCNNGC	2 cut(s)	351, 559
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	110, 549
CviAII	CATG	3 cut(s)	350, 558, 598
CviJI	RGCY	8 cut(s)	42, 53, 74, 238, 330, 366, 476, 540
CviKI_1	RGCY	8 cut(s)	42, 53, 74, 238, 330, 366, 476, 540
CviQI	GTAC	2 cut(s)	110, 549
DpnI	GATC	1 cut(s)	385
DpnII	GATC	1 cut(s)	383
DrdI	GACNNNNNNGTC	2 cut(s)	308, 447
DseDI	GACNNNNNNGTC	2 cut(s)	308, 447
Eam1104I	CTCTTC	2 cut(s)	126, 321
EarI	CTCTTC	2 cut(s)	126, 321
Ecl136II	GAGCTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	42
EcoRI	GAATTC	2 cut(s)	161, 407
EcoT14I	CCWWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	3 cut(s)	353, 561, 601
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	3 cut(s)	349, 557, 597
FauNDI	CATATG	2 cut(s)	96, 284
Fnu4HI	GCNGC	4 cut(s)	354, 418, 595, 604
FokI	GGATG	3 cut(s)	416, 476, 579
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	4 cut(s)	354, 418, 595, 604
GluI	GCNGC	4 cut(s)	354, 418, 595, 604
GsaI	CCCAGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	353, 561, 601
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	2 cut(s)	19, 139
HpaI	GTTAAC	1 cut(s)	292
HphI	GGTGA	2 cut(s)	185, 233
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	24, 321, 432
Hpy188III	TCNNGA	3 cut(s)	148, 401, 610
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	444
HpyAV	CCTTC	3 cut(s)	57, 268, 422
HpyCH4III	ACNGT	3 cut(s)	229, 444, 617
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	9 cut(s)	8, 125, 204, 420, 454, 471, 561, 570, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	567, 600, 603
HpySE526I	ACGT	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	353, 561, 601
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	383
LmnI	GCTCC	1 cut(s)	150
LpnPI	CCDG	5 cut(s)	120, 161, 240, 312, 567
Lsp1109I	GCAGC	3 cut(s)	340, 404, 606
LweI	GCATC	1 cut(s)	557
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	385
MboI	GATC	1 cut(s)	383
MboII	GAAGA	6 cut(s)	114, 140, 143, 279, 308, 311
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	5 cut(s)	161, 178, 388, 407, 502
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	3 cut(s)	259, 555, 583
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	95, 402
Mva1269I	GAATGC	1 cut(s)	662
MwoI	GCNNNNNNNGC	3 cut(s)	567, 600, 603
NdeI	CATATG	2 cut(s)	96, 284
NdeII	GATC	1 cut(s)	383
NlaIII	CATG	3 cut(s)	353, 561, 601
NlaIV	GGNNCC	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	3 cut(s)	353, 561, 601
PaeI	GCATGC	2 cut(s)	353, 561
PctI	GAATGC	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	355, 419, 596, 605
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	553
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	111, 550
RsaNI	GTAC	2 cut(s)	110, 549
RseI	CAYNNNNRTG	2 cut(s)	95, 402
SacI	GAGCTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	4 cut(s)	354, 418, 595, 604
Sau3AI	GATC	1 cut(s)	383
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	28
SduI	GDGCHC	1 cut(s)	44
SfaNI	GCATC	1 cut(s)	557
SfcI	CTRYAG	2 cut(s)	153, 418
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	2 cut(s)	95, 402
SphI	GCATGC	2 cut(s)	353, 561
Sse9I	AATT	5 cut(s)	161, 178, 388, 407, 502
SsiI	CCGC	2 cut(s)	198, 604
SstI	GAGCTC	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	3 cut(s)	229, 444, 617
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	251, 491
TasI	AATT	5 cut(s)	161, 178, 388, 407, 502
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	606
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	232, 427
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	353, 417, 594
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	83, 375, 420
TspRI	CASTG	2 cut(s)	232, 427
Van91I	CCANNNNNTGG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	4 cut(s)	161, 178, 388, 407
XceI	RCATGY	3 cut(s)	353, 561, 601
XmnI	GAANNNNTTC	1 cut(s)	411
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.